fcsparse 0.1.0 → 0.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. data/LICENSE +19 -0
  2. data/README.md +31 -0
  3. data/bin/fcsparse +27 -0
  4. data/doc/FCSParse.html +565 -0
  5. data/doc/FCSParse/FCSEvent.html +1040 -0
  6. data/doc/FCSParse/FCSFile.html +994 -0
  7. data/doc/FCSParse/FCSParam.html +602 -0
  8. data/doc/_index.html +122 -0
  9. data/doc/class_list.html +53 -0
  10. data/doc/css/common.css +1 -0
  11. data/doc/css/full_list.css +57 -0
  12. data/doc/css/style.css +328 -0
  13. data/doc/file_list.html +52 -0
  14. data/doc/frames.html +28 -0
  15. data/doc/index.html +122 -0
  16. data/doc/js/app.js +214 -0
  17. data/doc/js/full_list.js +173 -0
  18. data/doc/js/jquery.js +4 -0
  19. data/doc/method_list.html +220 -0
  20. data/doc/top-level-namespace.html +112 -0
  21. data/fcsparse.gemspec +20 -0
  22. data/lib/fcsparse.rb +0 -5
  23. data/lib/fcsparse/version.rb +26 -0
  24. metadata +46 -41
data/doc/file_list.html ADDED
@@ -0,0 +1,52 @@
1
+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html>
4
+ <head>
5
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+
7
+ <link rel="stylesheet" href="css/full_list.css" type="text/css" media="screen" charset="utf-8" />
8
+
9
+ <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
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+
11
+
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+
13
+ <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
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+
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+ <script type="text/javascript" charset="utf-8" src="js/full_list.js"></script>
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+
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+
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+ <base id="base_target" target="_parent" />
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+ </head>
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+ <body>
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+ <script type="text/javascript" charset="utf-8">
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+ if (window.top.frames.main) {
23
+ document.getElementById('base_target').target = 'main';
24
+ document.body.className = 'frames';
25
+ }
26
+ </script>
27
+ <div id="content">
28
+ <h1 id="full_list_header">File List</h1>
29
+ <div id="nav">
30
+
31
+ <span><a target="_self" href="class_list.html">
32
+ Classes
33
+ </a></span>
34
+
35
+ <span><a target="_self" href="method_list.html">
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+ Methods
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+ </a></span>
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+
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+ <span><a target="_self" href="file_list.html">
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+ Files
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+ </a></span>
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+
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+ </div>
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+ <div id="search">Search: <input type="text" /></div>
45
+
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+ <ul id="full_list" class="file">
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+
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+
49
+ </ul>
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+ </div>
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+ </body>
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+ </html>
data/doc/frames.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN"
2
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd">
3
+
4
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
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+ <title>Documentation by YARD 0.8.2.1</title>
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+ </head>
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+ <script type="text/javascript" charset="utf-8">
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+ window.onload = function() {
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+ var match = window.location.hash.match(/^#!(.+)/);
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+ var name = 'index.html';
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+ if (match) {
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+ name = unescape(match[1]);
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+ }
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+ document.writeln('<frameset cols="20%,*">' +
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+ '<frame name="list" src="class_list.html" />' +
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+ '<frame name="main" src="' + name + '" />' +
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+ '</frameset>');
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+ }
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+ </script>
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+ <noscript>
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+ <frameset cols="20%,*">
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+ <frame name="list" src="class_list.html" />
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+ <frame name="main" src="index.html" />
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+ </frameset>
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+ </noscript>
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+ </html>
data/doc/index.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
2
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
3
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
4
+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Documentation by YARD 0.8.2.1
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+
9
+ </title>
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+
11
+ <link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
17
+ relpath = '';
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+ framesUrl = "frames.html#!" + escape(window.location.href);
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+ </script>
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+
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+
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+ <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
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+
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+ <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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+
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+
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+ </head>
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+ <body>
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+ <div id="header">
30
+ <div id="menu">
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+
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+
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
34
+ </div>
35
+
36
+ <div id="search">
37
+
38
+ <a class="full_list_link" id="class_list_link"
39
+ href="class_list.html">
40
+ Class List
41
+ </a>
42
+
43
+ <a class="full_list_link" id="method_list_link"
44
+ href="method_list.html">
45
+ Method List
46
+ </a>
47
+
48
+ <a class="full_list_link" id="file_list_link"
49
+ href="file_list.html">
50
+ File List
51
+ </a>
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+
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1 class="noborder title">Documentation by YARD 0.8.2.1</h1>
60
+ <div id="listing">
61
+ <h1 class="alphaindex">Alphabetic Index</h1>
62
+
63
+ <div class="clear"></div>
64
+ <h2>Namespace Listing A-Z</h2>
65
+
66
+
67
+
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+
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+ <table>
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+ <tr>
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+ <td valign='top' width="33%">
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+
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+
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+ <ul id="alpha_F" class="alpha">
75
+ <li class="letter">F</li>
76
+ <ul>
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+
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+ <li>
79
+ <span class='object_link'><a href="FCSParse/FCSEvent.html" title="FCSParse::FCSEvent (class)">FCSEvent</a></span>
80
+
81
+ <small>(FCSParse)</small>
82
+
83
+ </li>
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+
85
+ <li>
86
+ <span class='object_link'><a href="FCSParse/FCSFile.html" title="FCSParse::FCSFile (class)">FCSFile</a></span>
87
+
88
+ <small>(FCSParse)</small>
89
+
90
+ </li>
91
+
92
+ <li>
93
+ <span class='object_link'><a href="FCSParse/FCSParam.html" title="FCSParse::FCSParam (class)">FCSParam</a></span>
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+
95
+ <small>(FCSParse)</small>
96
+
97
+ </li>
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+
99
+ <li>
100
+ <span class='object_link'><a href="FCSParse.html" title="FCSParse (module)">FCSParse</a></span>
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+
102
+ </li>
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+
104
+ </ul>
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+ </ul>
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+
107
+ </td>
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+ </tr>
109
+ </table>
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+
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+ </div>
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+
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+ </div>
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+
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+ <div id="footer">
116
+ Generated on Wed Jun 20 16:53:14 2012 by
117
+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
118
+ 0.8.2.1 (ruby-1.8.7).
119
+ </div>
120
+
121
+ </body>
122
+ </html>
data/doc/js/app.js ADDED
@@ -0,0 +1,214 @@
1
+ function createSourceLinks() {
2
+ $('.method_details_list .source_code').
3
+ before("<span class='showSource'>[<a href='#' class='toggleSource'>View source</a>]</span>");
4
+ $('.toggleSource').toggle(function() {
5
+ $(this).parent().nextAll('.source_code').slideDown(100);
6
+ $(this).text("Hide source");
7
+ },
8
+ function() {
9
+ $(this).parent().nextAll('.source_code').slideUp(100);
10
+ $(this).text("View source");
11
+ });
12
+ }
13
+
14
+ function createDefineLinks() {
15
+ var tHeight = 0;
16
+ $('.defines').after(" <a href='#' class='toggleDefines'>more...</a>");
17
+ $('.toggleDefines').toggle(function() {
18
+ tHeight = $(this).parent().prev().height();
19
+ $(this).prev().show();
20
+ $(this).parent().prev().height($(this).parent().height());
21
+ $(this).text("(less)");
22
+ },
23
+ function() {
24
+ $(this).prev().hide();
25
+ $(this).parent().prev().height(tHeight);
26
+ $(this).text("more...");
27
+ });
28
+ }
29
+
30
+ function createFullTreeLinks() {
31
+ var tHeight = 0;
32
+ $('.inheritanceTree').toggle(function() {
33
+ tHeight = $(this).parent().prev().height();
34
+ $(this).parent().toggleClass('showAll');
35
+ $(this).text("(hide)");
36
+ $(this).parent().prev().height($(this).parent().height());
37
+ },
38
+ function() {
39
+ $(this).parent().toggleClass('showAll');
40
+ $(this).parent().prev().height(tHeight);
41
+ $(this).text("show all");
42
+ });
43
+ }
44
+
45
+ function fixBoxInfoHeights() {
46
+ $('dl.box dd.r1, dl.box dd.r2').each(function() {
47
+ $(this).prev().height($(this).height());
48
+ });
49
+ }
50
+
51
+ function searchFrameLinks() {
52
+ $('.full_list_link').click(function() {
53
+ toggleSearchFrame(this, $(this).attr('href'));
54
+ return false;
55
+ });
56
+ }
57
+
58
+ function toggleSearchFrame(id, link) {
59
+ var frame = $('#search_frame');
60
+ $('#search a').removeClass('active').addClass('inactive');
61
+ if (frame.attr('src') == link && frame.css('display') != "none") {
62
+ frame.slideUp(100);
63
+ $('#search a').removeClass('active inactive');
64
+ }
65
+ else {
66
+ $(id).addClass('active').removeClass('inactive');
67
+ frame.attr('src', link).slideDown(100);
68
+ }
69
+ }
70
+
71
+ function linkSummaries() {
72
+ $('.summary_signature').click(function() {
73
+ document.location = $(this).find('a').attr('href');
74
+ });
75
+ }
76
+
77
+ function framesInit() {
78
+ if (hasFrames) {
79
+ document.body.className = 'frames';
80
+ $('#menu .noframes a').attr('href', document.location);
81
+ window.top.document.title = $('html head title').text();
82
+ }
83
+ else {
84
+ $('#menu .noframes a').text('frames').attr('href', framesUrl);
85
+ }
86
+ }
87
+
88
+ function keyboardShortcuts() {
89
+ if (window.top.frames.main) return;
90
+ $(document).keypress(function(evt) {
91
+ if (evt.altKey || evt.ctrlKey || evt.metaKey || evt.shiftKey) return;
92
+ if (typeof evt.target !== "undefined" &&
93
+ (evt.target.nodeName == "INPUT" ||
94
+ evt.target.nodeName == "TEXTAREA")) return;
95
+ switch (evt.charCode) {
96
+ case 67: case 99: $('#class_list_link').click(); break; // 'c'
97
+ case 77: case 109: $('#method_list_link').click(); break; // 'm'
98
+ case 70: case 102: $('#file_list_link').click(); break; // 'f'
99
+ default: break;
100
+ }
101
+ });
102
+ }
103
+
104
+ function summaryToggle() {
105
+ $('.summary_toggle').click(function() {
106
+ if (localStorage) {
107
+ localStorage.summaryCollapsed = $(this).text();
108
+ }
109
+ $('.summary_toggle').each(function() {
110
+ $(this).text($(this).text() == "collapse" ? "expand" : "collapse");
111
+ var next = $(this).parent().parent().nextAll('ul.summary').first();
112
+ if (next.hasClass('compact')) {
113
+ next.toggle();
114
+ next.nextAll('ul.summary').first().toggle();
115
+ }
116
+ else if (next.hasClass('summary')) {
117
+ var list = $('<ul class="summary compact" />');
118
+ list.html(next.html());
119
+ list.find('.summary_desc, .note').remove();
120
+ list.find('a').each(function() {
121
+ $(this).html($(this).find('strong').html());
122
+ $(this).parent().html($(this)[0].outerHTML);
123
+ });
124
+ next.before(list);
125
+ next.toggle();
126
+ }
127
+ });
128
+ return false;
129
+ });
130
+ if (localStorage) {
131
+ if (localStorage.summaryCollapsed == "collapse") {
132
+ $('.summary_toggle').first().click();
133
+ }
134
+ else localStorage.summaryCollapsed = "expand";
135
+ }
136
+ }
137
+
138
+ function fixOutsideWorldLinks() {
139
+ $('a').each(function() {
140
+ if (window.location.host != this.host) this.target = '_parent';
141
+ });
142
+ }
143
+
144
+ function generateTOC() {
145
+ if ($('#filecontents').length === 0) return;
146
+ var _toc = $('<ol class="top"></ol>');
147
+ var show = false;
148
+ var toc = _toc;
149
+ var counter = 0;
150
+ var tags = ['h2', 'h3', 'h4', 'h5', 'h6'];
151
+ var i;
152
+ if ($('#filecontents h1').length > 1) tags.unshift('h1');
153
+ for (i = 0; i < tags.length; i++) { tags[i] = '#filecontents ' + tags[i]; }
154
+ var lastTag = parseInt(tags[0][1], 10);
155
+ $(tags.join(', ')).each(function() {
156
+ if ($(this).parents('.method_details .docstring').length != 0) return;
157
+ if (this.id == "filecontents") return;
158
+ show = true;
159
+ var thisTag = parseInt(this.tagName[1], 10);
160
+ if (this.id.length === 0) {
161
+ var proposedId = $(this).attr('toc-id');
162
+ if (typeof(proposedId) != "undefined") this.id = proposedId;
163
+ else {
164
+ var proposedId = $(this).text().replace(/[^a-z0-9-]/ig, '_');
165
+ if ($('#' + proposedId).length > 0) { proposedId += counter; counter++; }
166
+ this.id = proposedId;
167
+ }
168
+ }
169
+ if (thisTag > lastTag) {
170
+ for (i = 0; i < thisTag - lastTag; i++) {
171
+ var tmp = $('<ol/>'); toc.append(tmp); toc = tmp;
172
+ }
173
+ }
174
+ if (thisTag < lastTag) {
175
+ for (i = 0; i < lastTag - thisTag; i++) toc = toc.parent();
176
+ }
177
+ var title = $(this).attr('toc-title');
178
+ if (typeof(title) == "undefined") title = $(this).text();
179
+ toc.append('<li><a href="#' + this.id + '">' + title + '</a></li>');
180
+ lastTag = thisTag;
181
+ });
182
+ if (!show) return;
183
+ html = '<div id="toc"><p class="title"><a class="hide_toc" href="#"><strong>Table of Contents</strong></a> <small>(<a href="#" class="float_toc">left</a>)</small></p></div>';
184
+ $('#content').prepend(html);
185
+ $('#toc').append(_toc);
186
+ $('#toc .hide_toc').toggle(function() {
187
+ $('#toc .top').slideUp('fast');
188
+ $('#toc').toggleClass('hidden');
189
+ $('#toc .title small').toggle();
190
+ }, function() {
191
+ $('#toc .top').slideDown('fast');
192
+ $('#toc').toggleClass('hidden');
193
+ $('#toc .title small').toggle();
194
+ });
195
+ $('#toc .float_toc').toggle(function() {
196
+ $(this).text('float');
197
+ $('#toc').toggleClass('nofloat');
198
+ }, function() {
199
+ $(this).text('left');
200
+ $('#toc').toggleClass('nofloat');
201
+ });
202
+ }
203
+
204
+ $(framesInit);
205
+ $(createSourceLinks);
206
+ $(createDefineLinks);
207
+ $(createFullTreeLinks);
208
+ $(fixBoxInfoHeights);
209
+ $(searchFrameLinks);
210
+ $(linkSummaries);
211
+ $(keyboardShortcuts);
212
+ $(summaryToggle);
213
+ $(fixOutsideWorldLinks);
214
+ $(generateTOC);
data/doc/js/full_list.js ADDED
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1
+ var inSearch = null;
2
+ var searchIndex = 0;
3
+ var searchCache = [];
4
+ var searchString = '';
5
+ var regexSearchString = '';
6
+ var caseSensitiveMatch = false;
7
+ var ignoreKeyCodeMin = 8;
8
+ var ignoreKeyCodeMax = 46;
9
+ var commandKey = 91;
10
+
11
+ RegExp.escape = function(text) {
12
+ return text.replace(/[-[\]{}()*+?.,\\^$|#\s]/g, "\\$&");
13
+ }
14
+
15
+ function fullListSearch() {
16
+ // generate cache
17
+ searchCache = [];
18
+ $('#full_list li').each(function() {
19
+ var link = $(this).find('.object_link a');
20
+ var fullName = link.attr('title').split(' ')[0];
21
+ searchCache.push({name:link.text(), fullName:fullName, node:$(this), link:link});
22
+ });
23
+
24
+ $('#search input').keyup(function(event) {
25
+ if ((event.keyCode > ignoreKeyCodeMin && event.keyCode < ignoreKeyCodeMax)
26
+ || event.keyCode == commandKey)
27
+ return;
28
+ searchString = this.value;
29
+ caseSensitiveMatch = searchString.match(/[A-Z]/) != null;
30
+ regexSearchString = RegExp.escape(searchString);
31
+ if (caseSensitiveMatch) {
32
+ regexSearchString += "|" +
33
+ $.map(searchString.split(''), function(e) { return RegExp.escape(e); }).
34
+ join('.+?');
35
+ }
36
+ if (searchString === "") {
37
+ clearTimeout(inSearch);
38
+ inSearch = null;
39
+ $('ul .search_uncollapsed').removeClass('search_uncollapsed');
40
+ $('#full_list, #content').removeClass('insearch');
41
+ $('#full_list li').removeClass('found').each(function() {
42
+
43
+ var link = $(this).find('.object_link a');
44
+ link.text(link.text());
45
+ });
46
+ if (clicked) {
47
+ clicked.parents('ul').each(function() {
48
+ $(this).removeClass('collapsed').prev().removeClass('collapsed');
49
+ });
50
+ }
51
+ highlight();
52
+ }
53
+ else {
54
+ if (inSearch) clearTimeout(inSearch);
55
+ searchIndex = 0;
56
+ lastRowClass = '';
57
+ $('#full_list, #content').addClass('insearch');
58
+ $('#noresults').text('');
59
+ searchItem();
60
+ }
61
+ });
62
+
63
+ $('#search input').focus();
64
+ $('#full_list').after("<div id='noresults'></div>");
65
+ }
66
+
67
+ var lastRowClass = '';
68
+ function searchItem() {
69
+ for (var i = 0; i < searchCache.length / 50; i++) {
70
+ var item = searchCache[searchIndex];
71
+ var searchName = (searchString.indexOf('::') != -1 ? item.fullName : item.name);
72
+ var matchString = regexSearchString;
73
+ var matchRegexp = new RegExp(matchString, caseSensitiveMatch ? "" : "i");
74
+ if (searchName.match(matchRegexp) == null) {
75
+ item.node.removeClass('found');
76
+ }
77
+ else {
78
+ item.node.css('padding-left', '10px').addClass('found');
79
+ item.node.parents().addClass('search_uncollapsed');
80
+ item.node.removeClass(lastRowClass).addClass(lastRowClass == 'r1' ? 'r2' : 'r1');
81
+ lastRowClass = item.node.hasClass('r1') ? 'r1' : 'r2';
82
+ item.link.html(item.name.replace(matchRegexp, "<strong>$&</strong>"));
83
+ }
84
+
85
+ if (searchCache.length === searchIndex + 1) {
86
+ searchDone();
87
+ return;
88
+ }
89
+ else {
90
+ searchIndex++;
91
+ }
92
+ }
93
+ inSearch = setTimeout('searchItem()', 0);
94
+ }
95
+
96
+ function searchDone() {
97
+ highlight(true);
98
+ if ($('#full_list li:visible').size() === 0) {
99
+ $('#noresults').text('No results were found.').hide().fadeIn();
100
+ }
101
+ else {
102
+ $('#noresults').text('');
103
+ }
104
+ $('#content').removeClass('insearch');
105
+ clearTimeout(inSearch);
106
+ inSearch = null;
107
+ }
108
+
109
+ clicked = null;
110
+ function linkList() {
111
+ $('#full_list li, #full_list li a:last').click(function(evt) {
112
+ if ($(this).hasClass('toggle')) return true;
113
+ if (this.tagName.toLowerCase() == "li") {
114
+ var toggle = $(this).children('a.toggle');
115
+ if (toggle.size() > 0 && evt.pageX < toggle.offset().left) {
116
+ toggle.click();
117
+ return false;
118
+ }
119
+ }
120
+ if (clicked) clicked.removeClass('clicked');
121
+ var win = window.top.frames.main ? window.top.frames.main : window.parent;
122
+ if (this.tagName.toLowerCase() == "a") {
123
+ clicked = $(this).parent('li').addClass('clicked');
124
+ win.location = this.href;
125
+ }
126
+ else {
127
+ clicked = $(this).addClass('clicked');
128
+ win.location = $(this).find('a:last').attr('href');
129
+ }
130
+ return false;
131
+ });
132
+ }
133
+
134
+ function collapse() {
135
+ if (!$('#full_list').hasClass('class')) return;
136
+ $('#full_list.class a.toggle').click(function() {
137
+ $(this).parent().toggleClass('collapsed').next().toggleClass('collapsed');
138
+ highlight();
139
+ return false;
140
+ });
141
+ $('#full_list.class ul').each(function() {
142
+ $(this).addClass('collapsed').prev().addClass('collapsed');
143
+ });
144
+ $('#full_list.class').children().removeClass('collapsed');
145
+ highlight();
146
+ }
147
+
148
+ function highlight(no_padding) {
149
+ var n = 1;
150
+ $('#full_list li:visible').each(function() {
151
+ var next = n == 1 ? 2 : 1;
152
+ $(this).removeClass("r" + next).addClass("r" + n);
153
+ if (!no_padding && $('#full_list').hasClass('class')) {
154
+ $(this).css('padding-left', (10 + $(this).parents('ul').size() * 15) + 'px');
155
+ }
156
+ n = next;
157
+ });
158
+ }
159
+
160
+ function escapeShortcut() {
161
+ $(document).keydown(function(evt) {
162
+ if (evt.which == 27) {
163
+ $('#search_frame', window.top.document).slideUp(100);
164
+ $('#search a', window.top.document).removeClass('active inactive');
165
+ $(window.top).focus();
166
+ }
167
+ });
168
+ }
169
+
170
+ $(escapeShortcut);
171
+ $(fullListSearch);
172
+ $(linkList);
173
+ $(collapse);