fathom 0.3.0 → 0.3.1
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- data/.autotest +10 -0
- data/Gemfile +10 -2
- data/Gemfile.lock +8 -0
- data/TODO.md +12 -25
- data/VERSION +1 -1
- data/lib/{fathom/ext → ext}/array.rb +0 -0
- data/lib/{fathom/ext → ext}/faster_csv.rb +0 -0
- data/lib/{fathom/ext → ext}/open_struct.rb +0 -0
- data/lib/{fathom/ext → ext}/string.rb +0 -0
- data/lib/fathom.rb +16 -13
- data/lib/fathom/agent.rb +8 -9
- data/lib/fathom/{causal_graph.rb → archive/causal_graph.rb} +0 -0
- data/lib/fathom/{concept.rb → archive/concept.rb} +0 -0
- data/lib/fathom/archive/conditional_probability_matrix.rb +3 -0
- data/lib/fathom/{inverter.rb → archive/inverter.rb} +0 -0
- data/lib/fathom/archive/node.rb +24 -1
- data/lib/fathom/distributions/discrete_uniform.rb +11 -32
- data/lib/fathom/import.rb +37 -34
- data/lib/fathom/import/yaml_import.rb +22 -1
- data/lib/fathom/knowledge_base.rb +34 -23
- data/lib/fathom/knowledge_base/search.rb +19 -0
- data/lib/fathom/node.rb +32 -1
- data/lib/fathom/node/belief_node.rb +121 -0
- data/lib/fathom/node/cpm_node.rb +100 -0
- data/lib/fathom/node/data_collection.rb +97 -0
- data/lib/fathom/{data_node.rb → node/data_node.rb} +1 -1
- data/lib/fathom/{value_aggregator.rb → node/decision.rb} +5 -5
- data/lib/fathom/node/discrete_node.rb +41 -0
- data/lib/fathom/node/fact.rb +24 -0
- data/lib/fathom/{mc_node.rb → node/mc_node.rb} +1 -1
- data/lib/fathom/{enforced_name.rb → node/node_extensions/enforced_name.rb} +1 -1
- data/lib/fathom/{numeric_methods.rb → node/node_extensions/numeric_methods.rb} +19 -1
- data/lib/fathom/{plausible_range.rb → node/plausible_range.rb} +1 -1
- data/spec/ext/array_spec.rb +10 -0
- data/spec/ext/faster_csv_spec.rb +10 -0
- data/spec/ext/open_struct_spec.rb +20 -0
- data/spec/ext/string_spec.rb +7 -0
- data/spec/fathom/import/csv_import_spec.rb +11 -9
- data/spec/fathom/import/yaml_import_spec.rb +27 -7
- data/spec/fathom/knowledge_base_spec.rb +8 -4
- data/spec/fathom/node/belief_node_spec.rb +180 -0
- data/spec/fathom/node/cpm_node_spec.rb +144 -0
- data/spec/fathom/node/data_collection_spec.rb +26 -0
- data/spec/fathom/{data_node_spec.rb → node/data_node_spec.rb} +1 -1
- data/spec/fathom/node/decision_spec.rb +15 -0
- data/spec/fathom/node/discrete_node_spec.rb +56 -0
- data/spec/fathom/node/fact_spec.rb +33 -0
- data/spec/fathom/{mc_node_spec.rb → node/mc_node_spec.rb} +1 -1
- data/spec/fathom/{enforced_name_spec.rb → node/node_extensions/enforced_name_spec.rb} +1 -1
- data/spec/fathom/{numeric_methods_spec.rb → node/node_extensions/numeric_methods_spec.rb} +53 -11
- data/spec/fathom/{plausible_range_spec.rb → node/plausible_range_spec.rb} +1 -1
- data/spec/fathom/node_spec.rb +17 -0
- data/spec/fathom_spec.rb +40 -0
- data/spec/spec_helper.rb +3 -0
- data/spec/support/fact.yml +11 -0
- metadata +57 -30
- data/lib/fathom/value_multiplier.rb +0 -18
data/spec/spec_helper.rb
CHANGED
@@ -1,9 +1,12 @@
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1
1
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$LOAD_PATH.unshift(File.dirname(__FILE__))
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2
2
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$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
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3
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+
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3
4
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require 'fathom'
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4
5
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require 'rspec'
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5
6
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require 'rspec/autorun'
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6
7
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8
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+
include Fathom
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9
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+
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7
10
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# Requires supporting ruby files in spec/support/ and its subdirectories.
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8
11
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Dir[File.join(File.dirname(__FILE__), "support/**/*.rb")].each {|f| require f}
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9
12
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: fathom
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3
3
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version: !ruby/object:Gem::Version
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4
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-
hash:
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5
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-
prerelease:
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4
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+
hash: 17
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5
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+
prerelease:
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6
6
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segments:
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7
7
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- 0
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8
8
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- 3
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9
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-
-
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10
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-
version: 0.3.
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9
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+
- 1
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10
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+
version: 0.3.1
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11
11
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platform: ruby
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12
12
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authors:
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13
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- David
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@@ -15,7 +15,7 @@ autorequire:
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15
15
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bindir: bin
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16
16
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cert_chain: []
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17
17
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18
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-
date:
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+
date: 2011-02-10 00:00:00 -07:00
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19
19
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default_executable:
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20
20
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dependencies:
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21
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- !ruby/object:Gem::Dependency
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@@ -42,6 +42,7 @@ extra_rdoc_files:
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42
42
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- LICENSE
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43
43
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- README.md
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44
44
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files:
|
45
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+
- .autotest
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45
46
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- .bundle/config
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46
47
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- .document
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47
48
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- .gitignore
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@@ -54,65 +55,80 @@ files:
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54
55
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- TODO.md
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55
56
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- VERSION
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56
57
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- autotest/discover.rb
|
58
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+
- lib/ext/array.rb
|
59
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+
- lib/ext/faster_csv.rb
|
60
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+
- lib/ext/open_struct.rb
|
61
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+
- lib/ext/string.rb
|
57
62
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- lib/fathom.rb
|
58
63
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- lib/fathom/agent.rb
|
59
64
|
- lib/fathom/agent/agent_cluster.rb
|
60
65
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- lib/fathom/agent/properties.rb
|
66
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+
- lib/fathom/archive/causal_graph.rb
|
67
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+
- lib/fathom/archive/concept.rb
|
61
68
|
- lib/fathom/archive/conditional_probability_matrix.rb
|
69
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+
- lib/fathom/archive/inverter.rb
|
62
70
|
- lib/fathom/archive/n2.rb
|
63
71
|
- lib/fathom/archive/n3.rb
|
64
72
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- lib/fathom/archive/node.rb
|
65
73
|
- lib/fathom/archive/noodle.rb
|
66
74
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- lib/fathom/archive/scratch.rb
|
67
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-
- lib/fathom/causal_graph.rb
|
68
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-
- lib/fathom/concept.rb
|
69
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-
- lib/fathom/data_node.rb
|
70
75
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- lib/fathom/distributions.rb
|
71
76
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- lib/fathom/distributions/discrete_gaussian.rb
|
72
77
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- lib/fathom/distributions/discrete_uniform.rb
|
73
78
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- lib/fathom/distributions/gaussian.rb
|
74
79
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- lib/fathom/distributions/uniform.rb
|
75
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-
- lib/fathom/enforced_name.rb
|
76
|
-
- lib/fathom/ext/array.rb
|
77
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-
- lib/fathom/ext/faster_csv.rb
|
78
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-
- lib/fathom/ext/open_struct.rb
|
79
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-
- lib/fathom/ext/string.rb
|
80
80
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- lib/fathom/import.rb
|
81
81
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- lib/fathom/import/csv_import.rb
|
82
82
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- lib/fathom/import/import_node.rb
|
83
83
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- lib/fathom/import/yaml_import.rb
|
84
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-
- lib/fathom/inverter.rb
|
85
84
|
- lib/fathom/knowledge_base.rb
|
86
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-
- lib/fathom/
|
85
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+
- lib/fathom/knowledge_base/search.rb
|
87
86
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- lib/fathom/monte_carlo_set.rb
|
88
87
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- lib/fathom/node.rb
|
89
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-
- lib/fathom/
|
90
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-
- lib/fathom/
|
88
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+
- lib/fathom/node/belief_node.rb
|
89
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+
- lib/fathom/node/cpm_node.rb
|
90
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+
- lib/fathom/node/data_collection.rb
|
91
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+
- lib/fathom/node/data_node.rb
|
92
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+
- lib/fathom/node/decision.rb
|
93
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+
- lib/fathom/node/discrete_node.rb
|
94
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+
- lib/fathom/node/fact.rb
|
95
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+
- lib/fathom/node/mc_node.rb
|
96
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+
- lib/fathom/node/node_extensions/enforced_name.rb
|
97
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+
- lib/fathom/node/node_extensions/numeric_methods.rb
|
98
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+
- lib/fathom/node/plausible_range.rb
|
91
99
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- lib/fathom/simulation.rb
|
92
100
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- lib/fathom/simulation/tick_methods.rb
|
93
101
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- lib/fathom/simulation/tick_simulation.rb
|
94
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-
- lib/fathom/value_aggregator.rb
|
95
102
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- lib/fathom/value_description.rb
|
96
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-
- lib/fathom/value_multiplier.rb
|
97
103
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- lib/options_hash.rb
|
104
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+
- spec/ext/array_spec.rb
|
105
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+
- spec/ext/faster_csv_spec.rb
|
106
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+
- spec/ext/open_struct_spec.rb
|
107
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+
- spec/ext/string_spec.rb
|
98
108
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- spec/fathom/agent/agent_cluster_spec.rb
|
99
109
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- spec/fathom/agent_spec.rb
|
100
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-
- spec/fathom/data_node_spec.rb
|
101
110
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- spec/fathom/distributions/discrete_gaussian_spec.rb
|
102
111
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- spec/fathom/distributions/discrete_uniform_spec.rb
|
103
112
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- spec/fathom/distributions/gaussian_spec.rb
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104
113
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- spec/fathom/distributions/uniform_spec.rb
|
105
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-
- spec/fathom/enforced_name_spec.rb
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106
114
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- spec/fathom/import/csv_import_spec.rb
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107
115
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- spec/fathom/import/import_node_spec.rb
|
108
116
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- spec/fathom/import/yaml_import_spec.rb
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109
117
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- spec/fathom/import_spec.rb
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110
118
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- spec/fathom/knowledge_base_spec.rb
|
111
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-
- spec/fathom/mc_node_spec.rb
|
112
119
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- spec/fathom/monte_carlo_set_spec.rb
|
120
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+
- spec/fathom/node/belief_node_spec.rb
|
121
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+
- spec/fathom/node/cpm_node_spec.rb
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122
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+
- spec/fathom/node/data_collection_spec.rb
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123
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+
- spec/fathom/node/data_node_spec.rb
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124
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+
- spec/fathom/node/decision_spec.rb
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125
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+
- spec/fathom/node/discrete_node_spec.rb
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126
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+
- spec/fathom/node/fact_spec.rb
|
127
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+
- spec/fathom/node/mc_node_spec.rb
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128
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+
- spec/fathom/node/node_extensions/enforced_name_spec.rb
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129
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+
- spec/fathom/node/node_extensions/numeric_methods_spec.rb
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+
- spec/fathom/node/plausible_range_spec.rb
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113
131
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- spec/fathom/node_spec.rb
|
114
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-
- spec/fathom/numeric_methods_spec.rb
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115
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-
- spec/fathom/plausible_range_spec.rb
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116
132
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- spec/fathom/simulation/tick_simulation_spec.rb
|
117
133
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- spec/fathom/simulation_spec.rb
|
118
134
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- spec/fathom/value_description_spec.rb
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@@ -121,6 +137,7 @@ files:
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121
137
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- spec/support/demo.yml
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122
138
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- spec/support/demo_agent.rb
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123
139
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- spec/support/dummy_numeric_node.rb
|
140
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+
- spec/support/fact.yml
|
124
141
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has_rdoc: true
|
125
142
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homepage: http://github.com/davidrichards/fathom
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126
143
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licenses: []
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@@ -151,29 +168,39 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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151
168
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requirements: []
|
152
169
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|
153
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rubyforge_project:
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154
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-
rubygems_version: 1.
|
171
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+
rubygems_version: 1.5.0
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172
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signing_key:
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156
173
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specification_version: 3
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157
174
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summary: Decision Support in Ruby
|
158
175
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test_files:
|
176
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+
- spec/ext/array_spec.rb
|
177
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+
- spec/ext/faster_csv_spec.rb
|
178
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+
- spec/ext/open_struct_spec.rb
|
179
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+
- spec/ext/string_spec.rb
|
159
180
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- spec/fathom/agent/agent_cluster_spec.rb
|
160
181
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- spec/fathom/agent_spec.rb
|
161
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-
- spec/fathom/data_node_spec.rb
|
162
182
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- spec/fathom/distributions/discrete_gaussian_spec.rb
|
163
183
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- spec/fathom/distributions/discrete_uniform_spec.rb
|
164
184
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- spec/fathom/distributions/gaussian_spec.rb
|
165
185
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- spec/fathom/distributions/uniform_spec.rb
|
166
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-
- spec/fathom/enforced_name_spec.rb
|
167
186
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- spec/fathom/import/csv_import_spec.rb
|
168
187
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- spec/fathom/import/import_node_spec.rb
|
169
188
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- spec/fathom/import/yaml_import_spec.rb
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170
189
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- spec/fathom/import_spec.rb
|
171
190
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- spec/fathom/knowledge_base_spec.rb
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172
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-
- spec/fathom/mc_node_spec.rb
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173
191
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- spec/fathom/monte_carlo_set_spec.rb
|
192
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+
- spec/fathom/node/belief_node_spec.rb
|
193
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+
- spec/fathom/node/cpm_node_spec.rb
|
194
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+
- spec/fathom/node/data_collection_spec.rb
|
195
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+
- spec/fathom/node/data_node_spec.rb
|
196
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+
- spec/fathom/node/decision_spec.rb
|
197
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+
- spec/fathom/node/discrete_node_spec.rb
|
198
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+
- spec/fathom/node/fact_spec.rb
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199
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+
- spec/fathom/node/mc_node_spec.rb
|
200
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+
- spec/fathom/node/node_extensions/enforced_name_spec.rb
|
201
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+
- spec/fathom/node/node_extensions/numeric_methods_spec.rb
|
202
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+
- spec/fathom/node/plausible_range_spec.rb
|
174
203
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- spec/fathom/node_spec.rb
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175
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-
- spec/fathom/numeric_methods_spec.rb
|
176
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-
- spec/fathom/plausible_range_spec.rb
|
177
204
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- spec/fathom/simulation/tick_simulation_spec.rb
|
178
205
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- spec/fathom/simulation_spec.rb
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179
206
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- spec/fathom/value_description_spec.rb
|
@@ -1,18 +0,0 @@
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1
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-
require File.expand_path(File.join(File.dirname(__FILE__), '..', 'fathom'))
|
2
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-
module Fathom
|
3
|
-
class ValueMultiplier < ValueDescription
|
4
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-
|
5
|
-
def default_process
|
6
|
-
obj.values.inject(0.0) do |s, e|
|
7
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-
s *= e
|
8
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-
end
|
9
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-
end
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10
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-
protected :default_process
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11
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-
end
|
12
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-
end
|
13
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-
|
14
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-
if __FILE__ == $0
|
15
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-
include Fathom
|
16
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-
# TODO: Is there anything you want to do to run this file on its own?
|
17
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-
# ValueMultiplier.new
|
18
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-
end
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