fastq-factory 0.1.10 → 0.1.11
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- data/VERSION +1 -1
- data/fastq-factory.gemspec +1 -1
- data/lib/trim_and_correct.rb +4 -4
- metadata +2 -2
data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.1.
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1
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+
0.1.11
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data/fastq-factory.gemspec
CHANGED
data/lib/trim_and_correct.rb
CHANGED
@@ -50,11 +50,11 @@ def trim_and_correct_fastqs(sample_map, directory, forward_reads_suffix, forward
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50
50
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File.delete("paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}") if File.exists?("paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
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51
51
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File.delete("orphaned_paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}") if File.exists?("orphaned_paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
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File.delete("orphaned_paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}") if File.exists?("orphaned_paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
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53
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-
File.rename("paired_paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}", "#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
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54
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-
File.rename("paired_paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}", "#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
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53
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+
File.rename("paired_paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}", "#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}") if File.exists?("paired_paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.cor.#{forward_reads_file_extension}")
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54
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+
File.rename("paired_paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}", "#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}") if File.exists?("paired_paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.cor.#{reverse_reads_file_extension}")
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55
55
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else
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56
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-
File.rename("paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}", "#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}")
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57
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-
File.rename("paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}", "#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}")
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56
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+
File.rename("paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}", "#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}") if File.exists?("paired_#{sample_file_prefix}#{forward_reads_suffix}.trimmed.#{forward_reads_file_extension}")
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57
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+
File.rename("paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}", "#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}") if File.exists?("paired_#{sample_file_prefix}#{reverse_reads_suffix}.trimmed.#{reverse_reads_file_extension}")
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58
58
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end
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59
59
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end
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60
60
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end
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: fastq-factory
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.11
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5
5
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prerelease:
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6
6
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platform: ruby
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7
7
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authors:
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@@ -165,7 +165,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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165
165
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version: '0'
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166
166
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segments:
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167
167
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- 0
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168
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-
hash:
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168
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+
hash: -2790550573740398707
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169
169
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required_rubygems_version: !ruby/object:Gem::Requirement
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170
170
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none: false
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171
171
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requirements:
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