fastq-factory 0.1.0 → 0.1.1

data/Gemfile

@@ -5,7 +5,7 @@ source "http://rubygems.org"
 
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
-gem "trollop"
+gem "trollop", "~>2.0"
 gem "nokogiri"
 group :development do
   gem "shoulda", ">= 0"

data/VERSION

@@ -1 +1 @@
-0.1.0
+0.1.1

data/fastq-factory.gemspec

@@ -0,0 +1,75 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = "fastq-factory"
+  s.version = "0.1.1"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Anthony Underwood"]
+  s.date = "2012-08-23"
+  s.description = "This tool can process fastq files, using fastq_quality_trimmer and quake to correct fastq files and then provide a quality asssessment of the data"
+  s.email = "anthony.underwood@hpa.org.uk"
+  s.executables = ["fastq-factory"]
+  s.extra_rdoc_files = [
+    "LICENSE.txt",
+    "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+    "Gemfile",
+    "LICENSE.txt",
+    "README.rdoc",
+    "Rakefile",
+    "VERSION",
+    "bin/fastq-factory",
+    "fastq-factory.gemspec",
+    "lib/fastq-factory.rb",
+    "lib/fastq-remove-orphans.pl",
+    "lib/fastq_assessment.rb",
+    "lib/generate_quality_metrics.rb",
+    "lib/maths.rb",
+    "lib/miseq_run_stats.rb",
+    "lib/trim_and_correct.rb",
+    "test/helper.rb",
+    "test/test_fastq-factory.rb"
+  ]
+  s.homepage = "http://github.com/hpa-bioinformatics/fastq-factory"
+  s.licenses = ["MIT"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = "1.8.19"
+  s.summary = "A tool to process and QC fastq files from illumina machines"
+
+  if s.respond_to? :specification_version then
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_runtime_dependency(%q<trollop>, ["~> 2.0"])
+      s.add_runtime_dependency(%q<nokogiri>, [">= 0"])
+      s.add_development_dependency(%q<shoulda>, [">= 0"])
+      s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_development_dependency(%q<bundler>, ["~> 1.1.5"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.8.4"])
+      s.add_development_dependency(%q<simplecov>, [">= 0"])
+    else
+      s.add_dependency(%q<trollop>, ["~> 2.0"])
+      s.add_dependency(%q<nokogiri>, [">= 0"])
+      s.add_dependency(%q<shoulda>, [">= 0"])
+      s.add_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_dependency(%q<bundler>, ["~> 1.1.5"])
+      s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
+      s.add_dependency(%q<simplecov>, [">= 0"])
+    end
+  else
+    s.add_dependency(%q<trollop>, ["~> 2.0"])
+    s.add_dependency(%q<nokogiri>, [">= 0"])
+    s.add_dependency(%q<shoulda>, [">= 0"])
+    s.add_dependency(%q<rdoc>, ["~> 3.12"])
+    s.add_dependency(%q<bundler>, ["~> 1.1.5"])
+    s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
+    s.add_dependency(%q<simplecov>, [">= 0"])
+  end
+end
+

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: fastq-factory
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
   prerelease: 
 platform: ruby
 authors:
@@ -16,17 +16,17 @@ dependencies:
   requirement: !ruby/object:Gem::Requirement
     none: false
     requirements:
-    - - ! '>='
+    - - ~>
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '2.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     none: false
     requirements:
-    - - ! '>='
+    - - ~>
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '2.0'
 - !ruby/object:Gem::Dependency
   name: nokogiri
   requirement: !ruby/object:Gem::Requirement
@@ -140,6 +140,7 @@ files:
 - Rakefile
 - VERSION
 - bin/fastq-factory
+- fastq-factory.gemspec
 - lib/fastq-factory.rb
 - lib/fastq-remove-orphans.pl
 - lib/fastq_assessment.rb
@@ -164,7 +165,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 2485524748993201700
+      hash: -3816909551851915204
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: