fastout 0.0.1

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Files changed (51) hide show
  1. data/.gitignore +4 -0
  2. data/.rspec +2 -0
  3. data/Gemfile +4 -0
  4. data/Gemfile.lock +38 -0
  5. data/MIT-LICENSE +20 -0
  6. data/README.md +8 -0
  7. data/Rakefile +2 -0
  8. data/doc/classes/Fastout.html +105 -0
  9. data/doc/classes/Ranker.html +468 -0
  10. data/doc/classes/Ranker.src/M000001.html +18 -0
  11. data/doc/classes/Ranker.src/M000002.html +22 -0
  12. data/doc/classes/Ranker.src/M000003.html +42 -0
  13. data/doc/classes/Ranker.src/M000004.html +21 -0
  14. data/doc/classes/Ranker.src/M000005.html +28 -0
  15. data/doc/classes/Ranker.src/M000006.html +35 -0
  16. data/doc/classes/Ranker.src/M000007.html +18 -0
  17. data/doc/classes/Ranker.src/M000008.html +18 -0
  18. data/doc/classes/Ranker.src/M000009.html +33 -0
  19. data/doc/classes/Ranker.src/M000010.html +18 -0
  20. data/doc/classes/Ranker.src/M000011.html +22 -0
  21. data/doc/classes/Ranker.src/M000012.html +24 -0
  22. data/doc/classes/Ranker.src/M000013.html +28 -0
  23. data/doc/classes/Ranker.src/M000014.html +20 -0
  24. data/doc/classes/Ranker.src/M000015.html +19 -0
  25. data/doc/classes/Ranker/Point.html +262 -0
  26. data/doc/classes/Ranker/Point.src/M000016.html +18 -0
  27. data/doc/classes/Ranker/Point.src/M000017.html +24 -0
  28. data/doc/classes/Ranker/Point.src/M000018.html +18 -0
  29. data/doc/classes/Ranker/Point.src/M000019.html +18 -0
  30. data/doc/classes/Ranker/Point.src/M000020.html +18 -0
  31. data/doc/classes/Ranker/Point.src/M000021.html +26 -0
  32. data/doc/classes/Ranker/Point.src/M000022.html +18 -0
  33. data/doc/created.rid +1 -0
  34. data/doc/files/lib/fastout/ranker_rb.html +121 -0
  35. data/doc/files/lib/fastout/version_rb.html +101 -0
  36. data/doc/files/lib/fastout_rb.html +108 -0
  37. data/doc/files/spec/fastout/ranker_spec_rb.html +109 -0
  38. data/doc/files/spec/spec_helper_rb.html +110 -0
  39. data/doc/fr_class_index.html +29 -0
  40. data/doc/fr_file_index.html +28 -0
  41. data/doc/fr_method_index.html +48 -0
  42. data/doc/index.html +24 -0
  43. data/doc/rdoc-style.css +208 -0
  44. data/fastout.gemspec +29 -0
  45. data/lib/fastout.rb +1 -0
  46. data/lib/fastout/ranker.rb +243 -0
  47. data/lib/fastout/version.rb +3 -0
  48. data/spec/fastout/ranker_spec.rb +252 -0
  49. data/spec/parkinsons.csv +1 -0
  50. data/spec/spec_helper.rb +9 -0
  51. metadata +217 -0
data/doc/classes/Ranker/Point.src/M000016.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>next_id= (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 14</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">next_id=</span> <span class="ruby-identifier">id</span>
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+ <span class="ruby-ivar">@@next_id</span> = <span class="ruby-identifier">id</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000017.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>new (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 21</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span> <span class="ruby-operator">*</span><span class="ruby-identifier">attributes</span>
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+ <span class="ruby-ivar">@attributes</span> = <span class="ruby-identifier">attributes</span>
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+ <span class="ruby-ivar">@cluster</span> = <span class="ruby-keyword kw">nil</span>
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+ <span class="ruby-ivar">@score</span> = <span class="ruby-value">0</span>
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+ <span class="ruby-ivar">@bins</span> = []
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+
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+ <span class="ruby-ivar">@id</span> = <span class="ruby-ivar">@@next_id</span>
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+ <span class="ruby-ivar">@@next_id</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000018.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>[] (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 31</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-operator">[]</span> <span class="ruby-identifier">index</span>
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+ <span class="ruby-ivar">@attributes</span>[<span class="ruby-identifier">index</span>]
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000019.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>clustered? (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 35</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">clustered?</span>
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+ <span class="ruby-operator">!</span><span class="ruby-operator">!</span> <span class="ruby-identifier">cluster</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000020.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>uncluster! (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 39</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">uncluster!</span>
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+ <span class="ruby-ivar">@cluster</span> = <span class="ruby-keyword kw">nil</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000021.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>in_the_neighborhood_of? (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 43</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">in_the_neighborhood_of?</span> <span class="ruby-identifier">point</span>, <span class="ruby-identifier">attribute_indexes</span>, <span class="ruby-identifier">neighborhoods</span>
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+ <span class="ruby-identifier">attribute_indexes</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">attribute_index</span><span class="ruby-operator">|</span>
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+ <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">false</span> <span class="ruby-keyword kw">if</span> (<span class="ruby-identifier">bins</span>[<span class="ruby-identifier">attribute_index</span>] <span class="ruby-operator">-</span> <span class="ruby-identifier">point</span>.<span class="ruby-identifier">bins</span>[<span class="ruby-identifier">attribute_index</span>]).<span class="ruby-identifier">abs</span> <span class="ruby-operator">&gt;</span> <span class="ruby-value">1</span>
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+ <span class="ruby-keyword kw">end</span>
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+
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+ <span class="ruby-identifier">attribute_indexes</span>.<span class="ruby-identifier">each_with_index</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">attribute_index</span>, <span class="ruby-identifier">neighborhood_index</span><span class="ruby-operator">|</span>
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+ <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">false</span> <span class="ruby-keyword kw">if</span> (<span class="ruby-identifier">attributes</span>[<span class="ruby-identifier">attribute_index</span>] <span class="ruby-operator">-</span> <span class="ruby-identifier">point</span>.<span class="ruby-identifier">attributes</span>[<span class="ruby-identifier">attribute_index</span>]) <span class="ruby-operator">&gt;</span> (<span class="ruby-identifier">neighborhoods</span>[<span class="ruby-identifier">neighborhood_index</span>] <span class="ruby-operator">/</span> <span class="ruby-value">2.0</span>)
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+ <span class="ruby-keyword kw">end</span>
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+
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+ <span class="ruby-keyword kw">true</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/Ranker/Point.src/M000022.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>neighbor_of_any? (Ranker::Point)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/fastout/ranker.rb, line 55</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">neighbor_of_any?</span> <span class="ruby-identifier">points</span>, <span class="ruby-identifier">attribute_indexes</span>, <span class="ruby-identifier">neighborhoods</span>
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+ <span class="ruby-identifier">points</span>.<span class="ruby-identifier">inject</span>(<span class="ruby-keyword kw">false</span>) {<span class="ruby-operator">|</span><span class="ruby-identifier">found</span>, <span class="ruby-identifier">point</span><span class="ruby-operator">|</span> <span class="ruby-identifier">found</span> <span class="ruby-keyword kw">or</span> <span class="ruby-identifier">in_the_neighborhood_of?</span>(<span class="ruby-identifier">point</span>, <span class="ruby-identifier">attribute_indexes</span>, <span class="ruby-identifier">neighborhoods</span>) }
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/created.rid ADDED
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+ Tue, 23 Nov 2010 10:19:55 -0500
data/doc/files/lib/fastout/ranker_rb.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>File: ranker.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ elemStyle = elem.style;
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+
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+ if ( elemStyle.display != "block" ) {
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+ elemStyle.display = "block"
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+ } else {
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+ elemStyle.display = "none"
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+ }
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+
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+ return true;
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+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="fileHeader">
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+ <h1>ranker.rb</h1>
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Path:</strong></td>
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+ <td>lib/fastout/ranker.rb
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+ </td>
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+ </tr>
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+ <tr class="top-aligned-row">
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+ <td><strong>Last Update:</strong></td>
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+ <td>Tue Nov 23 10:02:15 -0500 2010</td>
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+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+
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+ <div id="bodyContent">
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+
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+
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+
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+ <div id="contextContent">
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+
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+ <div id="description">
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+ <p>
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+ Takes a data set and determines the outliers using the FASTOUT algorithm
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+ from Foss et al., &quot;Class Separation through Variance: a new
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+ application of outlier detection&quot;, Knowledge and Information Systems,
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+ 2010.
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+ </p>
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+ <table>
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+ <tr><td valign="top">Author:</td><td>Jason Dew (<a href="mailto:jason.dew@gmail.com">jason.dew@gmail.com</a>)
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+
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+ </td></tr>
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+ <tr><td valign="top">Copyright:</td><td>Copyright (c) 2010 Jason Dew
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+
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+ </td></tr>
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+ <tr><td valign="top">License:</td><td>MIT
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+
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+ </td></tr>
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+ </table>
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+
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+ </div>
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+
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+
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+ </div>
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+
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+
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+ </div>
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+
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+
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+ <!-- if includes -->
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+
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+ <div id="section">
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+
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+
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+
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+
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+ <!-- if method_list -->
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+
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+
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+ </div>
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+
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+
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+ </body>
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+ </html>
data/doc/files/lib/fastout/version_rb.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>File: version.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ elemStyle = elem.style;
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+
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+ if ( elemStyle.display != "block" ) {
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+ elemStyle.display = "block"
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+ } else {
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+ elemStyle.display = "none"
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+ }
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+
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+ return true;
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+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="fileHeader">
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+ <h1>version.rb</h1>
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Path:</strong></td>
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+ <td>lib/fastout/version.rb
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+ </td>
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+ </tr>
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+ <tr class="top-aligned-row">
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+ <td><strong>Last Update:</strong></td>
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+ <td>Mon Nov 22 22:25:12 -0500 2010</td>
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+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+
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+ <div id="bodyContent">
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+
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+ <div id="contextContent">
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+
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+ </div>
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+
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+ </div>
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+ <!-- if includes -->
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+ <div id="section">
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+ <!-- if method_list -->
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+ </div>
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+
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+
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+ </body>
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+ </html>
data/doc/files/lib/fastout_rb.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>File: fastout.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+ <div id="fileHeader">
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+ <h1>fastout.rb</h1>
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Path:</strong></td>
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+ <td>lib/fastout.rb
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+ </td>
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+ </tr>
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+ <tr class="top-aligned-row">
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+ <td><strong>Last Update:</strong></td>
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+ <td>Mon Nov 22 22:25:12 -0500 2010</td>
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+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+ <div id="contextContent">
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+
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+
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+ <div id="requires-list">
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+ <h3 class="section-bar">Required files</h3>
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+
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+ <div class="name-list">
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+ fastout/ranker&nbsp;&nbsp;
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+ </div>
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+ </div>
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+
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+ </div>
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+
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+
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+ </div>
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+
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+ <!-- if method_list -->
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+ </div>
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+
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+
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+ </body>
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+ </html>