fasta_util 0.3.1 → 0.4.0

data/Gemfile.lock

@@ -6,7 +6,7 @@ GEM
       bundler (~> 1.0.0)
       git (>= 1.2.5)
       rake
-    rake (0.8.7)
+    rake (0.9.2)
     rcov (0.9.9)
     shoulda (2.11.3)
 

data/VERSION

@@ -1 +1 @@
-0.3.1
+0.4.0

data/bin/fasta_util

@@ -5,7 +5,7 @@ require 'set'
 
 class FastaUtility < Thor
   include Thor::Actions
-  Struct.new("Stats", :sum, :l50, :n50, :count, :mean, :median)
+  Struct.new("Stats", :sum, :l50, :n50, :max, :mean, :median, :min, :count)
   
   no_tasks do
     def stats(lengths)
@@ -16,8 +16,10 @@ class FastaUtility < Thor
       stats[:sum] = lengths.inject(:+)
       stats[:l50] = lengths.find{|length| (temp_sum += length) > stats[:sum]/2.0}
       stats[:n50] = lengths.count{|length| length >= stats[:l50]}
+      stats[:max] = lengths.max
       stats[:mean] = stats[:sum].to_f/lengths.length
       stats[:median] = (lengths.length % 2 == 0) ? (lengths[lengths.length/2-1] + lengths[lengths.length/2])/2.0 : lengths[lengths.length/2]
+      stats[:min] = lengths.min
       stats[:count] = lengths.count
       return stats
     end

data/fasta_util.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{fasta_util}
-  s.version = "0.3.1"
+  s.version = "0.4.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["robsyme"]
-  s.date = %q{2011-05-09}
+  s.date = %q{2011-07-07}
   s.default_executable = %q{fasta_util}
   s.description = %q{Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on the fasta_tool script that I think was written by Jason Stajich.}
   s.email = %q{rob.syme@gmail.com}

metadata

@@ -2,7 +2,7 @@
 name: fasta_util
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.3.1
+  version: 0.4.0
 platform: ruby
 authors: 
 - robsyme
@@ -10,7 +10,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-05-09 00:00:00 +08:00
+date: 2011-07-07 00:00:00 +08:00
 default_executable: fasta_util
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -125,7 +125,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      hash: 2929691451831770963
+      hash: 4438515197359890059
       segments: 
       - 0
       version: "0"