fasta_read 2.0.1 → 2.0.2

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Files changed (6) hide show
  1. checksums.yaml +13 -5
  2. data/Gemfile.lock +1 -1
  3. data/README.md +8 -1
  4. data/bin/fasta_read +1 -0
  5. data/lib/fasta_read/version.rb +1 -1
  6. metadata +18 -19
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data/Gemfile.lock CHANGED
@@ -1,7 +1,7 @@
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  PATH
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  remote: .
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  specs:
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- fasta_read (2.0.1)
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+ fasta_read (2.0.2)
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  methadone (>= 1.3.2)
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  rake (>= 0.9.2)
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data/README.md CHANGED
@@ -1,8 +1,15 @@
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- [![Gem Version](https://badge.fury.io/rb/fasta_read.svg)](http://badge.fury.io/rb/fasta_read) [![Build Status](https://travis-ci.org/adamico/ruby-fasta-read.svg?branch=master)](https://travis-ci.org/adamico/ruby-fasta-read) [![Code Climate](https://codeclimate.com/github/adamico/ruby-fasta-read.png)](https://codeclimate.com/github/adamico/ruby-fasta-read)
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  # FastaRead
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+ [![Build Status](https://travis-ci.org/adamico/ruby-fasta-read.svg?branch=master)](https://travis-ci.org/adamico/ruby-fasta-read) [![Gem Version](https://badge.fury.io/rb/fasta_read.svg)](http://badge.fury.io/rb/fasta_read) [![Code Climate](https://codeclimate.com/github/adamico/ruby-fasta-read.png)](https://codeclimate.com/github/adamico/ruby-fasta-read)
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  A Ruby command-line program that will take coordinates and return either a unmasked gene sequence or a snp-masked sequence. The coordinates refer to the start and stop positions, and are "UCSC coordinates" i.e. 0 based and half open (see [UCSC_coordinate_transforms](http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms))
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+ ## Compatibility
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+ Ruby versions:
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+
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+ * MRI 1.9.3
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+ * MRI 2.0
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+ * MRI 2.1
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+
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  ## Installation
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  Add this line to your application's Gemfile:
data/bin/fasta_read CHANGED
@@ -1,4 +1,5 @@
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  #!/usr/bin/env ruby
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+ #encoding: utf-8
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  require 'optparse'
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  require 'methadone'
data/lib/fasta_read/version.rb CHANGED
@@ -1,3 +1,3 @@
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  module FastaRead
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- VERSION = "2.0.1"
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+ VERSION = "2.0.2"
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: fasta_read
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  version: !ruby/object:Gem::Version
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- version: 2.0.1
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+ version: 2.0.2
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  platform: ruby
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  authors:
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  - Andrea D'Amico
@@ -14,84 +14,84 @@ dependencies:
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  name: methadone
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 1.3.2
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 1.3.2
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  - !ruby/object:Gem::Dependency
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  name: rake
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 0.9.2
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 0.9.2
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  - !ruby/object:Gem::Dependency
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  name: aruba
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 0.5.4
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 0.5.4
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  - !ruby/object:Gem::Dependency
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  name: rspec
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 2.14.1
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 2.14.1
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  - !ruby/object:Gem::Dependency
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  name: guard-cucumber
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 1.4.1
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 1.4.1
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  - !ruby/object:Gem::Dependency
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  name: guard-rspec
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 4.2.8
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: 4.2.8
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  description: Extract DNA Fasta sequence from assembly files.
@@ -103,9 +103,9 @@ executables:
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  extensions: []
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  extra_rdoc_files: []
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  files:
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- - ".gitignore"
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- - ".rspec"
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- - ".travis.yml"
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+ - .gitignore
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+ - .rspec
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+ - .travis.yml
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  - Gemfile
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  - Gemfile.lock
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  - Guardfile
@@ -134,12 +134,12 @@ require_paths:
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  - lib
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  required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - ! '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
@@ -154,4 +154,3 @@ test_files:
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  - features/support/env.rb
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  - spec/fasta_read/sequence_spec.rb
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  - spec/spec_helper.rb
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- has_rdoc: