family-reunion 0.1.6 → 0.1.7

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Files changed (9) hide show
  1. data/VERSION +1 -1
  2. data/family-reunion.gemspec +2 -2
  3. data/lib/family-reunion/exact_matcher.rb +3 -3
  4. data/lib/family-reunion/fuzzy_matcher.rb +2 -2
  5. data/lib/family-reunion/matcher_helper.rb +2 -2
  6. data/lib/family-reunion/nomatch_organizer.rb +2 -2
  7. data/spec/fixtures/matched_merges.json +1 -1
  8. data/spec/fuzzy_matcher_spec.rb +1 -1
  9. metadata +4 -4
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.1.6
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+ 0.1.7
data/family-reunion.gemspec CHANGED
@@ -5,11 +5,11 @@
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5
 
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  Gem::Specification.new do |s|
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  s.name = %q{family-reunion}
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- s.version = "0.1.6"
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+ s.version = "0.1.7"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Dmitry Mozzherin", "David Shorthouse"]
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- s.date = %q{2011-06-15}
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+ s.date = %q{2011-06-16}
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  s.description = %q{An algorithm to merge related nodes of two taxonomic hierarchies with synonym information}
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  s.email = %q{dmozzherin@gmail.com}
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  s.extra_rdoc_files = [
data/lib/family-reunion/exact_matcher.rb CHANGED
@@ -31,7 +31,7 @@ class FamilyReunion
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  path = @fr.primary_node.valid_names_hash[name][:path]
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  path_ids = @fr.primary_node.valid_names_hash[name][:path_ids]
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  secondary_id = @fr.secondary_node.valid_names_hash[name][:id].to_s.to_sym
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- @fr.merges[primary_id] = {:matches => {secondary_id => {:match_type => :exact_valid_to_valid, :path => path, :path_ids => path_ids }}, :nonmatches => {}}
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+ @fr.merges[primary_id] = {:matches => {secondary_id => {:merge_type => :exact_valid_to_valid, :path => path, :path_ids => path_ids }}, :nonmatches => {}}
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  end
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  end
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@@ -47,10 +47,10 @@ class FamilyReunion
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  @fr.primary_synonyms_set & @fr.secondary_synonyms_set
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  end
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- def add_synonym_matches(match_set, match_type)
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+ def add_synonym_matches(match_set, merge_type)
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  match_set.each do |name|
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  primary_ids, secondary_ids = get_valid_name_ids(name)
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- secondary_id_matches = format_secondary_id_for_merge(secondary_ids, match_type)
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+ secondary_id_matches = format_secondary_id_for_merge(secondary_ids, merge_type)
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  primary_ids.each do |primary_id|
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  add_record_to_merges(primary_id, secondary_id_matches)
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  end
data/lib/family-reunion/fuzzy_matcher.rb CHANGED
@@ -44,11 +44,11 @@ class FamilyReunion
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  private
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- def add_matches(matched_nodes, match_type)
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+ def add_matches(matched_nodes, merge_type)
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  matched_nodes.each do |primary_node, secondary_nodes|
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  primary_id = primary_node[:id].to_s.to_sym
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  secondary_ids = secondary_nodes.map { |n| n[:id].to_s.to_sym }
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- secondary_id_matches = format_secondary_id_for_merge(secondary_ids, match_type)
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+ secondary_id_matches = format_secondary_id_for_merge(secondary_ids, merge_type)
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  add_record_to_merges(primary_id, secondary_id_matches)
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  end
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  end
data/lib/family-reunion/matcher_helper.rb CHANGED
@@ -1,12 +1,12 @@
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  class FamilyReunion
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  module MatcherHelper
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  private
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- def format_secondary_id_for_merge(secondary_ids, match_type)
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+ def format_secondary_id_for_merge(secondary_ids, merge_type)
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  secondary_ids.inject({}) do |res, i|
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  raise "Secondary id is not a symbol" unless i.is_a?(Symbol)
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  path = @fr.secondary_node.ids_hash[i][:path]
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  path_ids = @fr.secondary_node.ids_hash[i][:path_ids]
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- res[i] = {:match_type => match_type, :path => path, :path_ids => path_ids} unless res.has_key?(i)
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+ res[i] = {:merge_type => merge_type, :path => path, :path_ids => path_ids} unless res.has_key?(i)
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  res
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  end
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  end
data/lib/family-reunion/nomatch_organizer.rb CHANGED
@@ -51,9 +51,9 @@ class FamilyReunion
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  path = @fr.secondary_node.ids_hash[secondary_node_id][:path]
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  path_ids = @fr.secondary_node.ids_hash[secondary_node_id][:path_ids]
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  if @fr.merges.has_key?(primary_node_id) #never happens?
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- @fr.merges[primary_node_id][:nonmatches][secondary_node_id] = { :match_type => "new", :path => path, :path_ids => path_ids }
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+ @fr.merges[primary_node_id][:nonmatches][secondary_node_id] = { :merge_type => "new", :path => path, :path_ids => path_ids }
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  else
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- @fr.merges[primary_node_id] = { :matches => {}, :nonmatches => {secondary_node_id => { :match_type => nil, :path => path, :path_ids => path_ids } } }
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+ @fr.merges[primary_node_id] = { :matches => {}, :nonmatches => {secondary_node_id => { :merge_type => nil, :path => path, :path_ids => path_ids } } }
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  end
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  end
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data/spec/fixtures/matched_merges.json CHANGED
@@ -1 +1 @@
1
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triangularis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1414","invasiveants:tid:1416"]}},"nonmatches":{}},"invasiveants:tid:1392":{"matches":{"hex10351300":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex patagonicus"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1392"]}},"nonmatches":{}},"invasiveants:tid:1389":{"matches":{"hex10351289":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex brevicornis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1389"]}},"nonmatches":{}},"invasiveants:tid:1391":{"matches":{"hex10351309":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex obscurior"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1391"]}},"nonmatches":{}},"invasiveants:tid:1390":{"matches":{"hex10351285":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Brachymyrmex","Brachymyrmex minutus"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1388","invasiveants:tid:1390"]}},"nonmatches":{}},"invasiveants:tid:1475":{"matches":{"hex10357837":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica gundlachi"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1475"]}},"nonmatches":{}},"invasiveants:tid:1478":{"matches":{"hex10357759":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica membranifera"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1478"]}},"nonmatches":{}},"invasiveants:tid:1476":{"matches":{"hex10357766":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica hexamera"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1476"]}},"nonmatches":{}},"invasiveants:tid:1477":{"matches":{"hex10357857":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica margaritae"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1477"]}},"nonmatches":{}},"invasiveants:tid:1474":{"matches":{"hex10357716":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Pyramica","Pyramica eggersi"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1473","invasiveants:tid:1474"]}},"nonmatches":{}},"invasiveants:tid:1436":{"matches":{"hex10358305":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmica","Myrmica rubra"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1435","invasiveants:tid:1436"]}},"nonmatches":{}},"invasiveants:tid:1437":{"matches":{"hex10358173":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmica","Myrmica ruginodis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1435","invasiveants:tid:1437"]}},"nonmatches":{}},"invasiveants:tid:1430":{"matches":{"hex10352512":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium floricola"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1430"]}},"nonmatches":{}},"invasiveants:tid:1431":{"matches":{"hex10352415":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium pharaonis"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1431"]}},"nonmatches":{}},"invasiveants:tid:1428":{"matches":{"hex10352498":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium destructor"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1428"]}},"nonmatches":{}},"invasiveants:tid:1429":{"matches":{"hex10352402":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Monomorium","Monomorium ebeninum"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1427","invasiveants:tid:1429"]}},"nonmatches":{}},"invasiveants:tid:1434":{"matches":{"hex10351578":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Myrmelachista","Myrmelachista ramulorum"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1433","invasiveants:tid:1434"]}},"nonmatches":{}},"invasiveants:tid:1470":{"matches":{"hex10358678":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Prionopelta","Prionopelta antillana"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1469","invasiveants:tid:1470"]}},"nonmatches":{}},"invasiveants:tid:1411":{"matches":{"hex10352902":{"merge_type":"exact_valid_to_valid","path":["Formicidae","Eurhopalothrix","Eurhopalothrix floridana"],"path_ids":["invasiveants:tid:1381","invasiveants:tid:1410","invasiveants:tid:1411"]}},"nonmatches":{}},"invasiveants:tid:1481":{"matches":{"hex10356720":{"merge_type":"exact_valid_to_synonym","path":["Formicidae","Solenopsis","Solenopsis wagneri"],"path_ids":["hex100521","hex1022959","hex10356720"]}},"nonmatches":{}},"invasiveants:tid:1491":{"matches":{"hex10358019":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Formica","Formica nana"],"path_ids":["hex100521","hex1023020","hex10358019"]}},"nonmatches":{}},"invasiveants:tid:1492":{"matches":{"hex10358021":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Formica","Formica gracilis"],"path_ids":["hex100521","hex1023020","hex10358021"]}},"nonmatches":{}},"invasiveants:tid:1496":{"matches":{"hex10353188":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex foreli"],"path_ids":["hex100521","hex1022839","hex10353188"]},"hex10353182":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex primroseae"],"path_ids":["hex100521","hex1022839","hex10353182"]},"hex10353170":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex brevicornis"],"path_ids":["hex100521","hex1022839","hex10353170"]},"hex10353199":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Technomyrmex","Technomyrmex atrichosus"],"path_ids":["hex100521","hex1022839","hex10353199"]}},"nonmatches":{}},"invasiveants:tid:1407":{"matches":{"hex10349533":{"merge_type":"exact_synonym_to_valid","path":["Formicidae","Crematogaster","Crematogaster agnita"],"path_ids":["hex100521","hex1022726","hex10349533"]},"hex10758181":{"merge_type":"fuzzy_valid_to_synonym","path":["Formicidae","Trapeziopelta","Trapeziopelta diadela"],"path_ids":["hex100521","hex1057748","hex10758181"]},"hex10758108":{"merge_type":"fuzzy_synonym_to_valid","path":["Formicidae","Nothosphinctus","Nothosphinctus silaceus"],"path_ids":["hex100521","hex1057733","hex10758108"]}},"nonmatches":{}},"invasiveants:tid:1453":{"matches":{"hex10354887":{"merge_type":"fuzzy_valid_to_valid","path":["Formicidae","Pachycondyla","Pachycondyla solitaria"],"path_ids":["hex100521","hex1022882","hex10354887"]}},"nonmatches":{}}}
data/spec/fuzzy_matcher_spec.rb CHANGED
@@ -26,7 +26,7 @@ describe FamilyReunion::FuzzyMatcher do
26
26
  it "should be able to add matches to merges object" do
27
27
  @fr.stubs(:merges => {})
28
28
  @fm.merge
29
- @fr.merges.should == {:"invasiveants:tid:1453"=>{:matches=>{:hex10354887=>{:match_type=>:fuzzy_valid_to_valid, :path=>["Formicidae", "Pachycondyla", "Pachycondyla solitaria"], :path_ids=>["hex100521", "hex1022882", "hex10354887"]}}, :nonmatches=>{}}, :"invasiveants:tid:1407"=>{:matches=>{:hex10758181=>{:match_type=>:fuzzy_valid_to_synonym, :path=>["Formicidae", "Trapeziopelta", "Trapeziopelta diadela"], :path_ids=>["hex100521", "hex1057748", "hex10758181"]}, :hex10758108=>{:match_type=>:fuzzy_synonym_to_valid, :path=>["Formicidae", "Nothosphinctus", "Nothosphinctus silaceus"], :path_ids=>["hex100521", "hex1057733", "hex10758108"]}}, :nonmatches=>{}}, :"invasiveants:tid:1397"=>{:matches=>{:hex10357934=>{:match_type=>:fuzzy_synonym_to_synonym, :path=>["Formicidae", "Formica", "Formica lavateri"], :path_ids=>["hex100521", "hex1023020", "hex10357934"]}}, :nonmatches=>{}}}
29
+ @fr.merges.should == {:"invasiveants:tid:1453"=>{:matches=>{:hex10354887=>{:merge_type=>:fuzzy_valid_to_valid, :path=>["Formicidae", "Pachycondyla", "Pachycondyla solitaria"], :path_ids=>["hex100521", "hex1022882", "hex10354887"]}}, :nonmatches=>{}}, :"invasiveants:tid:1407"=>{:matches=>{:hex10758181=>{:merge_type=>:fuzzy_valid_to_synonym, :path=>["Formicidae", "Trapeziopelta", "Trapeziopelta diadela"], :path_ids=>["hex100521", "hex1057748", "hex10758181"]}, :hex10758108=>{:merge_type=>:fuzzy_synonym_to_valid, :path=>["Formicidae", "Nothosphinctus", "Nothosphinctus silaceus"], :path_ids=>["hex100521", "hex1057733", "hex10758108"]}}, :nonmatches=>{}}, :"invasiveants:tid:1397"=>{:matches=>{:hex10357934=>{:merge_type=>:fuzzy_synonym_to_synonym, :path=>["Formicidae", "Formica", "Formica lavateri"], :path_ids=>["hex100521", "hex1023020", "hex10357934"]}}, :nonmatches=>{}}}
30
30
  end
31
31
 
32
32
  end
metadata CHANGED
@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
5
5
  segments:
6
6
  - 0
7
7
  - 1
8
- - 6
9
- version: 0.1.6
8
+ - 7
9
+ version: 0.1.7
10
10
  platform: ruby
11
11
  authors:
12
12
  - Dmitry Mozzherin
@@ -15,7 +15,7 @@ autorequire:
15
15
  bindir: bin
16
16
  cert_chain: []
17
17
 
18
- date: 2011-06-15 00:00:00 -04:00
18
+ date: 2011-06-16 00:00:00 -04:00
19
19
  default_executable:
20
20
  dependencies:
21
21
  - !ruby/object:Gem::Dependency
@@ -233,7 +233,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
233
233
  requirements:
234
234
  - - ">="
235
235
  - !ruby/object:Gem::Version
236
- hash: 864169717715997554
236
+ hash: -1909949291295368264
237
237
  segments:
238
238
  - 0
239
239
  version: "0"