extzstd 0.0.2.CONCEPT → 0.0.3.CONCEPT
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
 - data/README.md +72 -22
 - data/Rakefile +73 -19
 - data/contrib/zstd/README.md +68 -0
 - data/contrib/zstd/common/bitstream.h +414 -0
 - data/contrib/zstd/common/entropy_common.c +231 -0
 - data/contrib/zstd/common/error_private.h +125 -0
 - data/contrib/zstd/common/error_public.h +77 -0
 - data/contrib/zstd/common/fse.h +628 -0
 - data/contrib/zstd/common/fse_decompress.c +331 -0
 - data/contrib/zstd/common/huf.h +228 -0
 - data/contrib/zstd/common/mem.h +377 -0
 - data/contrib/zstd/common/xxhash.c +854 -0
 - data/contrib/zstd/common/xxhash.h +273 -0
 - data/contrib/zstd/common/zbuff.h +197 -0
 - data/contrib/zstd/common/zstd.h +475 -0
 - data/contrib/zstd/common/zstd_common.c +91 -0
 - data/contrib/zstd/common/zstd_internal.h +238 -0
 - data/contrib/zstd/compress/fse_compress.c +807 -0
 - data/contrib/zstd/compress/huf_compress.c +577 -0
 - data/contrib/zstd/compress/zbuff_compress.c +327 -0
 - data/contrib/zstd/compress/zstd_compress.c +3074 -0
 - data/contrib/zstd/compress/zstd_opt.h +1046 -0
 - data/contrib/zstd/decompress/huf_decompress.c +894 -0
 - data/contrib/zstd/decompress/zbuff_decompress.c +294 -0
 - data/contrib/zstd/decompress/zstd_decompress.c +1362 -0
 - data/contrib/zstd/dictBuilder/divsufsort.c +1913 -0
 - data/contrib/zstd/dictBuilder/divsufsort.h +67 -0
 - data/contrib/zstd/dictBuilder/zdict.c +1045 -0
 - data/contrib/zstd/dictBuilder/zdict.h +113 -0
 - data/contrib/zstd/legacy/zstd_legacy.h +140 -0
 - data/contrib/zstd/legacy/zstd_v01.c +2178 -0
 - data/contrib/zstd/{zstd.h → legacy/zstd_v01.h} +46 -39
 - data/contrib/zstd/legacy/zstd_v02.c +3748 -0
 - data/contrib/zstd/legacy/zstd_v02.h +99 -0
 - data/contrib/zstd/legacy/zstd_v03.c +3389 -0
 - data/contrib/zstd/legacy/zstd_v03.h +99 -0
 - data/contrib/zstd/legacy/zstd_v04.c +4056 -0
 - data/contrib/zstd/legacy/zstd_v04.h +148 -0
 - data/contrib/zstd/legacy/zstd_v05.c +4325 -0
 - data/contrib/zstd/legacy/zstd_v05.h +171 -0
 - data/contrib/zstd/legacy/zstd_v06.c +4581 -0
 - data/contrib/zstd/legacy/zstd_v06.h +185 -0
 - data/ext/extconf.rb +10 -12
 - data/ext/extzstd.c +497 -144
 - data/ext/extzstd.h +127 -22
 - data/ext/extzstd_buffered.c +265 -0
 - data/ext/extzstd_nogvls.h +174 -0
 - data/ext/zstd_amalgam.c +18 -0
 - data/ext/zstd_legacy_v01.c +1 -0
 - data/ext/zstd_legacy_v02.c +1 -0
 - data/ext/zstd_legacy_v03.c +1 -0
 - data/ext/zstd_legacy_v04.c +1 -0
 - data/ext/zstd_legacy_v05.c +1 -0
 - data/ext/zstd_legacy_v06.c +1 -0
 - data/gemstub.rb +17 -1
 - data/lib/extzstd.rb +197 -77
 - data/lib/extzstd/version.rb +1 -1
 - data/test/test_basic.rb +41 -0
 - metadata +70 -20
 - data/contrib/zstd/Makefile +0 -115
 - data/contrib/zstd/fse.c +0 -2466
 - data/contrib/zstd/fse.h +0 -320
 - data/contrib/zstd/fse_static.h +0 -282
 - data/contrib/zstd/libzstd.pc.in +0 -14
 - data/contrib/zstd/zstd.c +0 -1768
 - data/contrib/zstd/zstd_static.h +0 -89
 - data/ext/extzstd-stream.c +0 -398
 
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            /*
         
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             * divsufsort.c for libdivsufsort-lite
         
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             * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved.
         
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             *
         
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             * Permission is hereby granted, free of charge, to any person
         
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             * obtaining a copy of this software and associated documentation
         
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             * files (the "Software"), to deal in the Software without
         
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             * restriction, including without limitation the rights to use,
         
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             * copy, modify, merge, publish, distribute, sublicense, and/or sell
         
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             * copies of the Software, and to permit persons to whom the
         
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             * Software is furnished to do so, subject to the following
         
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             * conditions:
         
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             *
         
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             * The above copyright notice and this permission notice shall be
         
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             * included in all copies or substantial portions of the Software.
         
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             *
         
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             * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
         
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             * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
         
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             * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
         
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             * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
         
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             * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
         
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             * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
         
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             * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
         
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             * OTHER DEALINGS IN THE SOFTWARE.
         
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             */
         
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            /*- Compiler specifics -*/
         
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            #ifdef __clang__
         
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            #pragma clang diagnostic ignored "-Wshorten-64-to-32"
         
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            #endif
         
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            #if defined(_MSC_VER)
         
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            #  pragma warning(disable : 4244)
         
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            #  pragma warning(disable : 4127)    /* C4127 : Condition expression is constant */
         
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            #endif
         
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            /*- Dependencies -*/
         
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            #include <assert.h>
         
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            #include <stdio.h>
         
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            #include <stdlib.h>
         
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            #include "divsufsort.h"
         
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            /*- Constants -*/
         
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            #if defined(INLINE)
         
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            # undef INLINE
         
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            #endif
         
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            #if !defined(INLINE)
         
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            # define INLINE __inline
         
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            #endif
         
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            #if defined(ALPHABET_SIZE) && (ALPHABET_SIZE < 1)
         
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            # undef ALPHABET_SIZE
         
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            #endif
         
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            #if !defined(ALPHABET_SIZE)
         
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            # define ALPHABET_SIZE (256)
         
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            #endif
         
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            #define BUCKET_A_SIZE (ALPHABET_SIZE)
         
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            #define BUCKET_B_SIZE (ALPHABET_SIZE * ALPHABET_SIZE)
         
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            #if defined(SS_INSERTIONSORT_THRESHOLD)
         
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            # if SS_INSERTIONSORT_THRESHOLD < 1
         
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            #  undef SS_INSERTIONSORT_THRESHOLD
         
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            #  define SS_INSERTIONSORT_THRESHOLD (1)
         
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            # endif
         
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            #else
         
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            # define SS_INSERTIONSORT_THRESHOLD (8)
         
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            #endif
         
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            #if defined(SS_BLOCKSIZE)
         
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            # if SS_BLOCKSIZE < 0
         
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            #  undef SS_BLOCKSIZE
         
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            #  define SS_BLOCKSIZE (0)
         
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            # elif 32768 <= SS_BLOCKSIZE
         
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            #  undef SS_BLOCKSIZE
         
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            #  define SS_BLOCKSIZE (32767)
         
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            # endif
         
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            #else
         
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            # define SS_BLOCKSIZE (1024)
         
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            #endif
         
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            /* minstacksize = log(SS_BLOCKSIZE) / log(3) * 2 */
         
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            #if SS_BLOCKSIZE == 0
         
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            # define SS_MISORT_STACKSIZE (96)
         
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            #elif SS_BLOCKSIZE <= 4096
         
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            # define SS_MISORT_STACKSIZE (16)
         
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            #else
         
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            # define SS_MISORT_STACKSIZE (24)
         
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            #endif
         
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            #define SS_SMERGE_STACKSIZE (32)
         
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            #define TR_INSERTIONSORT_THRESHOLD (8)
         
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            #define TR_STACKSIZE (64)
         
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            /*- Macros -*/
         
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            #ifndef SWAP
         
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            # define SWAP(_a, _b) do { t = (_a); (_a) = (_b); (_b) = t; } while(0)
         
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            #endif /* SWAP */
         
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            #ifndef MIN
         
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            # define MIN(_a, _b) (((_a) < (_b)) ? (_a) : (_b))
         
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            #endif /* MIN */
         
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            #ifndef MAX
         
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            # define MAX(_a, _b) (((_a) > (_b)) ? (_a) : (_b))
         
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            #endif /* MAX */
         
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            #define STACK_PUSH(_a, _b, _c, _d)\
         
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              do {\
         
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                assert(ssize < STACK_SIZE);\
         
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                stack[ssize].a = (_a), stack[ssize].b = (_b),\
         
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                stack[ssize].c = (_c), stack[ssize++].d = (_d);\
         
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              } while(0)
         
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            #define STACK_PUSH5(_a, _b, _c, _d, _e)\
         
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              do {\
         
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                assert(ssize < STACK_SIZE);\
         
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                stack[ssize].a = (_a), stack[ssize].b = (_b),\
         
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                stack[ssize].c = (_c), stack[ssize].d = (_d), stack[ssize++].e = (_e);\
         
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              } while(0)
         
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            #define STACK_POP(_a, _b, _c, _d)\
         
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              do {\
         
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                assert(0 <= ssize);\
         
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                if(ssize == 0) { return; }\
         
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                (_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
         
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                (_c) = stack[ssize].c, (_d) = stack[ssize].d;\
         
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              } while(0)
         
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            #define STACK_POP5(_a, _b, _c, _d, _e)\
         
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              do {\
         
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                assert(0 <= ssize);\
         
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                if(ssize == 0) { return; }\
         
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                (_a) = stack[--ssize].a, (_b) = stack[ssize].b,\
         
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                (_c) = stack[ssize].c, (_d) = stack[ssize].d, (_e) = stack[ssize].e;\
         
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              } while(0)
         
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            #define BUCKET_A(_c0) bucket_A[(_c0)]
         
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            #if ALPHABET_SIZE == 256
         
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            #define BUCKET_B(_c0, _c1) (bucket_B[((_c1) << 8) | (_c0)])
         
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            #define BUCKET_BSTAR(_c0, _c1) (bucket_B[((_c0) << 8) | (_c1)])
         
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            #else
         
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            #define BUCKET_B(_c0, _c1) (bucket_B[(_c1) * ALPHABET_SIZE + (_c0)])
         
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            #define BUCKET_BSTAR(_c0, _c1) (bucket_B[(_c0) * ALPHABET_SIZE + (_c1)])
         
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            #endif
         
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            /*- Private Functions -*/
         
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            static const int lg_table[256]= {
         
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             -1,0,1,1,2,2,2,2,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
         
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              5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,
         
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              6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
         
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              6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
         
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              7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
         
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              7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
         
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              7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
         
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              7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7
         
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            };
         
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            #if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
         
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            static INLINE
         
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            int
         
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            ss_ilg(int n) {
         
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            #if SS_BLOCKSIZE == 0
         
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              return (n & 0xffff0000) ?
         
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                      ((n & 0xff000000) ?
         
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                        24 + lg_table[(n >> 24) & 0xff] :
         
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                        16 + lg_table[(n >> 16) & 0xff]) :
         
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                      ((n & 0x0000ff00) ?
         
     | 
| 
      
 162 
     | 
    
         
            +
                         8 + lg_table[(n >>  8) & 0xff] :
         
     | 
| 
      
 163 
     | 
    
         
            +
                         0 + lg_table[(n >>  0) & 0xff]);
         
     | 
| 
      
 164 
     | 
    
         
            +
            #elif SS_BLOCKSIZE < 256
         
     | 
| 
      
 165 
     | 
    
         
            +
              return lg_table[n];
         
     | 
| 
      
 166 
     | 
    
         
            +
            #else
         
     | 
| 
      
 167 
     | 
    
         
            +
              return (n & 0xff00) ?
         
     | 
| 
      
 168 
     | 
    
         
            +
                      8 + lg_table[(n >> 8) & 0xff] :
         
     | 
| 
      
 169 
     | 
    
         
            +
                      0 + lg_table[(n >> 0) & 0xff];
         
     | 
| 
      
 170 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 171 
     | 
    
         
            +
            }
         
     | 
| 
      
 172 
     | 
    
         
            +
             
     | 
| 
      
 173 
     | 
    
         
            +
            #endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
         
     | 
| 
      
 174 
     | 
    
         
            +
             
     | 
| 
      
 175 
     | 
    
         
            +
            #if SS_BLOCKSIZE != 0
         
     | 
| 
      
 176 
     | 
    
         
            +
             
     | 
| 
      
 177 
     | 
    
         
            +
            static const int sqq_table[256] = {
         
     | 
| 
      
 178 
     | 
    
         
            +
              0,  16,  22,  27,  32,  35,  39,  42,  45,  48,  50,  53,  55,  57,  59,  61,
         
     | 
| 
      
 179 
     | 
    
         
            +
             64,  65,  67,  69,  71,  73,  75,  76,  78,  80,  81,  83,  84,  86,  87,  89,
         
     | 
| 
      
 180 
     | 
    
         
            +
             90,  91,  93,  94,  96,  97,  98,  99, 101, 102, 103, 104, 106, 107, 108, 109,
         
     | 
| 
      
 181 
     | 
    
         
            +
            110, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126,
         
     | 
| 
      
 182 
     | 
    
         
            +
            128, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,
         
     | 
| 
      
 183 
     | 
    
         
            +
            143, 144, 144, 145, 146, 147, 148, 149, 150, 150, 151, 152, 153, 154, 155, 155,
         
     | 
| 
      
 184 
     | 
    
         
            +
            156, 157, 158, 159, 160, 160, 161, 162, 163, 163, 164, 165, 166, 167, 167, 168,
         
     | 
| 
      
 185 
     | 
    
         
            +
            169, 170, 170, 171, 172, 173, 173, 174, 175, 176, 176, 177, 178, 178, 179, 180,
         
     | 
| 
      
 186 
     | 
    
         
            +
            181, 181, 182, 183, 183, 184, 185, 185, 186, 187, 187, 188, 189, 189, 190, 191,
         
     | 
| 
      
 187 
     | 
    
         
            +
            192, 192, 193, 193, 194, 195, 195, 196, 197, 197, 198, 199, 199, 200, 201, 201,
         
     | 
| 
      
 188 
     | 
    
         
            +
            202, 203, 203, 204, 204, 205, 206, 206, 207, 208, 208, 209, 209, 210, 211, 211,
         
     | 
| 
      
 189 
     | 
    
         
            +
            212, 212, 213, 214, 214, 215, 215, 216, 217, 217, 218, 218, 219, 219, 220, 221,
         
     | 
| 
      
 190 
     | 
    
         
            +
            221, 222, 222, 223, 224, 224, 225, 225, 226, 226, 227, 227, 228, 229, 229, 230,
         
     | 
| 
      
 191 
     | 
    
         
            +
            230, 231, 231, 232, 232, 233, 234, 234, 235, 235, 236, 236, 237, 237, 238, 238,
         
     | 
| 
      
 192 
     | 
    
         
            +
            239, 240, 240, 241, 241, 242, 242, 243, 243, 244, 244, 245, 245, 246, 246, 247,
         
     | 
| 
      
 193 
     | 
    
         
            +
            247, 248, 248, 249, 249, 250, 250, 251, 251, 252, 252, 253, 253, 254, 254, 255
         
     | 
| 
      
 194 
     | 
    
         
            +
            };
         
     | 
| 
      
 195 
     | 
    
         
            +
             
     | 
| 
      
 196 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 197 
     | 
    
         
            +
            int
         
     | 
| 
      
 198 
     | 
    
         
            +
            ss_isqrt(int x) {
         
     | 
| 
      
 199 
     | 
    
         
            +
              int y, e;
         
     | 
| 
      
 200 
     | 
    
         
            +
             
     | 
| 
      
 201 
     | 
    
         
            +
              if(x >= (SS_BLOCKSIZE * SS_BLOCKSIZE)) { return SS_BLOCKSIZE; }
         
     | 
| 
      
 202 
     | 
    
         
            +
              e = (x & 0xffff0000) ?
         
     | 
| 
      
 203 
     | 
    
         
            +
                    ((x & 0xff000000) ?
         
     | 
| 
      
 204 
     | 
    
         
            +
                      24 + lg_table[(x >> 24) & 0xff] :
         
     | 
| 
      
 205 
     | 
    
         
            +
                      16 + lg_table[(x >> 16) & 0xff]) :
         
     | 
| 
      
 206 
     | 
    
         
            +
                    ((x & 0x0000ff00) ?
         
     | 
| 
      
 207 
     | 
    
         
            +
                       8 + lg_table[(x >>  8) & 0xff] :
         
     | 
| 
      
 208 
     | 
    
         
            +
                       0 + lg_table[(x >>  0) & 0xff]);
         
     | 
| 
      
 209 
     | 
    
         
            +
             
     | 
| 
      
 210 
     | 
    
         
            +
              if(e >= 16) {
         
     | 
| 
      
 211 
     | 
    
         
            +
                y = sqq_table[x >> ((e - 6) - (e & 1))] << ((e >> 1) - 7);
         
     | 
| 
      
 212 
     | 
    
         
            +
                if(e >= 24) { y = (y + 1 + x / y) >> 1; }
         
     | 
| 
      
 213 
     | 
    
         
            +
                y = (y + 1 + x / y) >> 1;
         
     | 
| 
      
 214 
     | 
    
         
            +
              } else if(e >= 8) {
         
     | 
| 
      
 215 
     | 
    
         
            +
                y = (sqq_table[x >> ((e - 6) - (e & 1))] >> (7 - (e >> 1))) + 1;
         
     | 
| 
      
 216 
     | 
    
         
            +
              } else {
         
     | 
| 
      
 217 
     | 
    
         
            +
                return sqq_table[x] >> 4;
         
     | 
| 
      
 218 
     | 
    
         
            +
              }
         
     | 
| 
      
 219 
     | 
    
         
            +
             
     | 
| 
      
 220 
     | 
    
         
            +
              return (x < (y * y)) ? y - 1 : y;
         
     | 
| 
      
 221 
     | 
    
         
            +
            }
         
     | 
| 
      
 222 
     | 
    
         
            +
             
     | 
| 
      
 223 
     | 
    
         
            +
            #endif /* SS_BLOCKSIZE != 0 */
         
     | 
| 
      
 224 
     | 
    
         
            +
             
     | 
| 
      
 225 
     | 
    
         
            +
             
     | 
| 
      
 226 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 227 
     | 
    
         
            +
             
     | 
| 
      
 228 
     | 
    
         
            +
            /* Compares two suffixes. */
         
     | 
| 
      
 229 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 230 
     | 
    
         
            +
            int
         
     | 
| 
      
 231 
     | 
    
         
            +
            ss_compare(const unsigned char *T,
         
     | 
| 
      
 232 
     | 
    
         
            +
                       const int *p1, const int *p2,
         
     | 
| 
      
 233 
     | 
    
         
            +
                       int depth) {
         
     | 
| 
      
 234 
     | 
    
         
            +
              const unsigned char *U1, *U2, *U1n, *U2n;
         
     | 
| 
      
 235 
     | 
    
         
            +
             
     | 
| 
      
 236 
     | 
    
         
            +
              for(U1 = T + depth + *p1,
         
     | 
| 
      
 237 
     | 
    
         
            +
                  U2 = T + depth + *p2,
         
     | 
| 
      
 238 
     | 
    
         
            +
                  U1n = T + *(p1 + 1) + 2,
         
     | 
| 
      
 239 
     | 
    
         
            +
                  U2n = T + *(p2 + 1) + 2;
         
     | 
| 
      
 240 
     | 
    
         
            +
                  (U1 < U1n) && (U2 < U2n) && (*U1 == *U2);
         
     | 
| 
      
 241 
     | 
    
         
            +
                  ++U1, ++U2) {
         
     | 
| 
      
 242 
     | 
    
         
            +
              }
         
     | 
| 
      
 243 
     | 
    
         
            +
             
     | 
| 
      
 244 
     | 
    
         
            +
              return U1 < U1n ?
         
     | 
| 
      
 245 
     | 
    
         
            +
                    (U2 < U2n ? *U1 - *U2 : 1) :
         
     | 
| 
      
 246 
     | 
    
         
            +
                    (U2 < U2n ? -1 : 0);
         
     | 
| 
      
 247 
     | 
    
         
            +
            }
         
     | 
| 
      
 248 
     | 
    
         
            +
             
     | 
| 
      
 249 
     | 
    
         
            +
             
     | 
| 
      
 250 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 251 
     | 
    
         
            +
             
     | 
| 
      
 252 
     | 
    
         
            +
            #if (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1)
         
     | 
| 
      
 253 
     | 
    
         
            +
             
     | 
| 
      
 254 
     | 
    
         
            +
            /* Insertionsort for small size groups */
         
     | 
| 
      
 255 
     | 
    
         
            +
            static
         
     | 
| 
      
 256 
     | 
    
         
            +
            void
         
     | 
| 
      
 257 
     | 
    
         
            +
            ss_insertionsort(const unsigned char *T, const int *PA,
         
     | 
| 
      
 258 
     | 
    
         
            +
                             int *first, int *last, int depth) {
         
     | 
| 
      
 259 
     | 
    
         
            +
              int *i, *j;
         
     | 
| 
      
 260 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 261 
     | 
    
         
            +
              int r;
         
     | 
| 
      
 262 
     | 
    
         
            +
             
     | 
| 
      
 263 
     | 
    
         
            +
              for(i = last - 2; first <= i; --i) {
         
     | 
| 
      
 264 
     | 
    
         
            +
                for(t = *i, j = i + 1; 0 < (r = ss_compare(T, PA + t, PA + *j, depth));) {
         
     | 
| 
      
 265 
     | 
    
         
            +
                  do { *(j - 1) = *j; } while((++j < last) && (*j < 0));
         
     | 
| 
      
 266 
     | 
    
         
            +
                  if(last <= j) { break; }
         
     | 
| 
      
 267 
     | 
    
         
            +
                }
         
     | 
| 
      
 268 
     | 
    
         
            +
                if(r == 0) { *j = ~*j; }
         
     | 
| 
      
 269 
     | 
    
         
            +
                *(j - 1) = t;
         
     | 
| 
      
 270 
     | 
    
         
            +
              }
         
     | 
| 
      
 271 
     | 
    
         
            +
            }
         
     | 
| 
      
 272 
     | 
    
         
            +
             
     | 
| 
      
 273 
     | 
    
         
            +
            #endif /* (SS_BLOCKSIZE != 1) && (SS_INSERTIONSORT_THRESHOLD != 1) */
         
     | 
| 
      
 274 
     | 
    
         
            +
             
     | 
| 
      
 275 
     | 
    
         
            +
             
     | 
| 
      
 276 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 277 
     | 
    
         
            +
             
     | 
| 
      
 278 
     | 
    
         
            +
            #if (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE)
         
     | 
| 
      
 279 
     | 
    
         
            +
             
     | 
| 
      
 280 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 281 
     | 
    
         
            +
            void
         
     | 
| 
      
 282 
     | 
    
         
            +
            ss_fixdown(const unsigned char *Td, const int *PA,
         
     | 
| 
      
 283 
     | 
    
         
            +
                       int *SA, int i, int size) {
         
     | 
| 
      
 284 
     | 
    
         
            +
              int j, k;
         
     | 
| 
      
 285 
     | 
    
         
            +
              int v;
         
     | 
| 
      
 286 
     | 
    
         
            +
              int c, d, e;
         
     | 
| 
      
 287 
     | 
    
         
            +
             
     | 
| 
      
 288 
     | 
    
         
            +
              for(v = SA[i], c = Td[PA[v]]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
         
     | 
| 
      
 289 
     | 
    
         
            +
                d = Td[PA[SA[k = j++]]];
         
     | 
| 
      
 290 
     | 
    
         
            +
                if(d < (e = Td[PA[SA[j]]])) { k = j; d = e; }
         
     | 
| 
      
 291 
     | 
    
         
            +
                if(d <= c) { break; }
         
     | 
| 
      
 292 
     | 
    
         
            +
              }
         
     | 
| 
      
 293 
     | 
    
         
            +
              SA[i] = v;
         
     | 
| 
      
 294 
     | 
    
         
            +
            }
         
     | 
| 
      
 295 
     | 
    
         
            +
             
     | 
| 
      
 296 
     | 
    
         
            +
            /* Simple top-down heapsort. */
         
     | 
| 
      
 297 
     | 
    
         
            +
            static
         
     | 
| 
      
 298 
     | 
    
         
            +
            void
         
     | 
| 
      
 299 
     | 
    
         
            +
            ss_heapsort(const unsigned char *Td, const int *PA, int *SA, int size) {
         
     | 
| 
      
 300 
     | 
    
         
            +
              int i, m;
         
     | 
| 
      
 301 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 302 
     | 
    
         
            +
             
     | 
| 
      
 303 
     | 
    
         
            +
              m = size;
         
     | 
| 
      
 304 
     | 
    
         
            +
              if((size % 2) == 0) {
         
     | 
| 
      
 305 
     | 
    
         
            +
                m--;
         
     | 
| 
      
 306 
     | 
    
         
            +
                if(Td[PA[SA[m / 2]]] < Td[PA[SA[m]]]) { SWAP(SA[m], SA[m / 2]); }
         
     | 
| 
      
 307 
     | 
    
         
            +
              }
         
     | 
| 
      
 308 
     | 
    
         
            +
             
     | 
| 
      
 309 
     | 
    
         
            +
              for(i = m / 2 - 1; 0 <= i; --i) { ss_fixdown(Td, PA, SA, i, m); }
         
     | 
| 
      
 310 
     | 
    
         
            +
              if((size % 2) == 0) { SWAP(SA[0], SA[m]); ss_fixdown(Td, PA, SA, 0, m); }
         
     | 
| 
      
 311 
     | 
    
         
            +
              for(i = m - 1; 0 < i; --i) {
         
     | 
| 
      
 312 
     | 
    
         
            +
                t = SA[0], SA[0] = SA[i];
         
     | 
| 
      
 313 
     | 
    
         
            +
                ss_fixdown(Td, PA, SA, 0, i);
         
     | 
| 
      
 314 
     | 
    
         
            +
                SA[i] = t;
         
     | 
| 
      
 315 
     | 
    
         
            +
              }
         
     | 
| 
      
 316 
     | 
    
         
            +
            }
         
     | 
| 
      
 317 
     | 
    
         
            +
             
     | 
| 
      
 318 
     | 
    
         
            +
             
     | 
| 
      
 319 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 320 
     | 
    
         
            +
             
     | 
| 
      
 321 
     | 
    
         
            +
            /* Returns the median of three elements. */
         
     | 
| 
      
 322 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 323 
     | 
    
         
            +
            int *
         
     | 
| 
      
 324 
     | 
    
         
            +
            ss_median3(const unsigned char *Td, const int *PA,
         
     | 
| 
      
 325 
     | 
    
         
            +
                       int *v1, int *v2, int *v3) {
         
     | 
| 
      
 326 
     | 
    
         
            +
              int *t;
         
     | 
| 
      
 327 
     | 
    
         
            +
              if(Td[PA[*v1]] > Td[PA[*v2]]) { SWAP(v1, v2); }
         
     | 
| 
      
 328 
     | 
    
         
            +
              if(Td[PA[*v2]] > Td[PA[*v3]]) {
         
     | 
| 
      
 329 
     | 
    
         
            +
                if(Td[PA[*v1]] > Td[PA[*v3]]) { return v1; }
         
     | 
| 
      
 330 
     | 
    
         
            +
                else { return v3; }
         
     | 
| 
      
 331 
     | 
    
         
            +
              }
         
     | 
| 
      
 332 
     | 
    
         
            +
              return v2;
         
     | 
| 
      
 333 
     | 
    
         
            +
            }
         
     | 
| 
      
 334 
     | 
    
         
            +
             
     | 
| 
      
 335 
     | 
    
         
            +
            /* Returns the median of five elements. */
         
     | 
| 
      
 336 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 337 
     | 
    
         
            +
            int *
         
     | 
| 
      
 338 
     | 
    
         
            +
            ss_median5(const unsigned char *Td, const int *PA,
         
     | 
| 
      
 339 
     | 
    
         
            +
                       int *v1, int *v2, int *v3, int *v4, int *v5) {
         
     | 
| 
      
 340 
     | 
    
         
            +
              int *t;
         
     | 
| 
      
 341 
     | 
    
         
            +
              if(Td[PA[*v2]] > Td[PA[*v3]]) { SWAP(v2, v3); }
         
     | 
| 
      
 342 
     | 
    
         
            +
              if(Td[PA[*v4]] > Td[PA[*v5]]) { SWAP(v4, v5); }
         
     | 
| 
      
 343 
     | 
    
         
            +
              if(Td[PA[*v2]] > Td[PA[*v4]]) { SWAP(v2, v4); SWAP(v3, v5); }
         
     | 
| 
      
 344 
     | 
    
         
            +
              if(Td[PA[*v1]] > Td[PA[*v3]]) { SWAP(v1, v3); }
         
     | 
| 
      
 345 
     | 
    
         
            +
              if(Td[PA[*v1]] > Td[PA[*v4]]) { SWAP(v1, v4); SWAP(v3, v5); }
         
     | 
| 
      
 346 
     | 
    
         
            +
              if(Td[PA[*v3]] > Td[PA[*v4]]) { return v4; }
         
     | 
| 
      
 347 
     | 
    
         
            +
              return v3;
         
     | 
| 
      
 348 
     | 
    
         
            +
            }
         
     | 
| 
      
 349 
     | 
    
         
            +
             
     | 
| 
      
 350 
     | 
    
         
            +
            /* Returns the pivot element. */
         
     | 
| 
      
 351 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 352 
     | 
    
         
            +
            int *
         
     | 
| 
      
 353 
     | 
    
         
            +
            ss_pivot(const unsigned char *Td, const int *PA, int *first, int *last) {
         
     | 
| 
      
 354 
     | 
    
         
            +
              int *middle;
         
     | 
| 
      
 355 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 356 
     | 
    
         
            +
             
     | 
| 
      
 357 
     | 
    
         
            +
              t = last - first;
         
     | 
| 
      
 358 
     | 
    
         
            +
              middle = first + t / 2;
         
     | 
| 
      
 359 
     | 
    
         
            +
             
     | 
| 
      
 360 
     | 
    
         
            +
              if(t <= 512) {
         
     | 
| 
      
 361 
     | 
    
         
            +
                if(t <= 32) {
         
     | 
| 
      
 362 
     | 
    
         
            +
                  return ss_median3(Td, PA, first, middle, last - 1);
         
     | 
| 
      
 363 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 364 
     | 
    
         
            +
                  t >>= 2;
         
     | 
| 
      
 365 
     | 
    
         
            +
                  return ss_median5(Td, PA, first, first + t, middle, last - 1 - t, last - 1);
         
     | 
| 
      
 366 
     | 
    
         
            +
                }
         
     | 
| 
      
 367 
     | 
    
         
            +
              }
         
     | 
| 
      
 368 
     | 
    
         
            +
              t >>= 3;
         
     | 
| 
      
 369 
     | 
    
         
            +
              first  = ss_median3(Td, PA, first, first + t, first + (t << 1));
         
     | 
| 
      
 370 
     | 
    
         
            +
              middle = ss_median3(Td, PA, middle - t, middle, middle + t);
         
     | 
| 
      
 371 
     | 
    
         
            +
              last   = ss_median3(Td, PA, last - 1 - (t << 1), last - 1 - t, last - 1);
         
     | 
| 
      
 372 
     | 
    
         
            +
              return ss_median3(Td, PA, first, middle, last);
         
     | 
| 
      
 373 
     | 
    
         
            +
            }
         
     | 
| 
      
 374 
     | 
    
         
            +
             
     | 
| 
      
 375 
     | 
    
         
            +
             
     | 
| 
      
 376 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 377 
     | 
    
         
            +
             
     | 
| 
      
 378 
     | 
    
         
            +
            /* Binary partition for substrings. */
         
     | 
| 
      
 379 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 380 
     | 
    
         
            +
            int *
         
     | 
| 
      
 381 
     | 
    
         
            +
            ss_partition(const int *PA,
         
     | 
| 
      
 382 
     | 
    
         
            +
                                int *first, int *last, int depth) {
         
     | 
| 
      
 383 
     | 
    
         
            +
              int *a, *b;
         
     | 
| 
      
 384 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 385 
     | 
    
         
            +
              for(a = first - 1, b = last;;) {
         
     | 
| 
      
 386 
     | 
    
         
            +
                for(; (++a < b) && ((PA[*a] + depth) >= (PA[*a + 1] + 1));) { *a = ~*a; }
         
     | 
| 
      
 387 
     | 
    
         
            +
                for(; (a < --b) && ((PA[*b] + depth) <  (PA[*b + 1] + 1));) { }
         
     | 
| 
      
 388 
     | 
    
         
            +
                if(b <= a) { break; }
         
     | 
| 
      
 389 
     | 
    
         
            +
                t = ~*b;
         
     | 
| 
      
 390 
     | 
    
         
            +
                *b = *a;
         
     | 
| 
      
 391 
     | 
    
         
            +
                *a = t;
         
     | 
| 
      
 392 
     | 
    
         
            +
              }
         
     | 
| 
      
 393 
     | 
    
         
            +
              if(first < a) { *first = ~*first; }
         
     | 
| 
      
 394 
     | 
    
         
            +
              return a;
         
     | 
| 
      
 395 
     | 
    
         
            +
            }
         
     | 
| 
      
 396 
     | 
    
         
            +
             
     | 
| 
      
 397 
     | 
    
         
            +
            /* Multikey introsort for medium size groups. */
         
     | 
| 
      
 398 
     | 
    
         
            +
            static
         
     | 
| 
      
 399 
     | 
    
         
            +
            void
         
     | 
| 
      
 400 
     | 
    
         
            +
            ss_mintrosort(const unsigned char *T, const int *PA,
         
     | 
| 
      
 401 
     | 
    
         
            +
                          int *first, int *last,
         
     | 
| 
      
 402 
     | 
    
         
            +
                          int depth) {
         
     | 
| 
      
 403 
     | 
    
         
            +
            #define STACK_SIZE SS_MISORT_STACKSIZE
         
     | 
| 
      
 404 
     | 
    
         
            +
              struct { int *a, *b, c; int d; } stack[STACK_SIZE];
         
     | 
| 
      
 405 
     | 
    
         
            +
              const unsigned char *Td;
         
     | 
| 
      
 406 
     | 
    
         
            +
              int *a, *b, *c, *d, *e, *f;
         
     | 
| 
      
 407 
     | 
    
         
            +
              int s, t;
         
     | 
| 
      
 408 
     | 
    
         
            +
              int ssize;
         
     | 
| 
      
 409 
     | 
    
         
            +
              int limit;
         
     | 
| 
      
 410 
     | 
    
         
            +
              int v, x = 0;
         
     | 
| 
      
 411 
     | 
    
         
            +
             
     | 
| 
      
 412 
     | 
    
         
            +
              for(ssize = 0, limit = ss_ilg(last - first);;) {
         
     | 
| 
      
 413 
     | 
    
         
            +
             
     | 
| 
      
 414 
     | 
    
         
            +
                if((last - first) <= SS_INSERTIONSORT_THRESHOLD) {
         
     | 
| 
      
 415 
     | 
    
         
            +
            #if 1 < SS_INSERTIONSORT_THRESHOLD
         
     | 
| 
      
 416 
     | 
    
         
            +
                  if(1 < (last - first)) { ss_insertionsort(T, PA, first, last, depth); }
         
     | 
| 
      
 417 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 418 
     | 
    
         
            +
                  STACK_POP(first, last, depth, limit);
         
     | 
| 
      
 419 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 420 
     | 
    
         
            +
                }
         
     | 
| 
      
 421 
     | 
    
         
            +
             
     | 
| 
      
 422 
     | 
    
         
            +
                Td = T + depth;
         
     | 
| 
      
 423 
     | 
    
         
            +
                if(limit-- == 0) { ss_heapsort(Td, PA, first, last - first); }
         
     | 
| 
      
 424 
     | 
    
         
            +
                if(limit < 0) {
         
     | 
| 
      
 425 
     | 
    
         
            +
                  for(a = first + 1, v = Td[PA[*first]]; a < last; ++a) {
         
     | 
| 
      
 426 
     | 
    
         
            +
                    if((x = Td[PA[*a]]) != v) {
         
     | 
| 
      
 427 
     | 
    
         
            +
                      if(1 < (a - first)) { break; }
         
     | 
| 
      
 428 
     | 
    
         
            +
                      v = x;
         
     | 
| 
      
 429 
     | 
    
         
            +
                      first = a;
         
     | 
| 
      
 430 
     | 
    
         
            +
                    }
         
     | 
| 
      
 431 
     | 
    
         
            +
                  }
         
     | 
| 
      
 432 
     | 
    
         
            +
                  if(Td[PA[*first] - 1] < v) {
         
     | 
| 
      
 433 
     | 
    
         
            +
                    first = ss_partition(PA, first, a, depth);
         
     | 
| 
      
 434 
     | 
    
         
            +
                  }
         
     | 
| 
      
 435 
     | 
    
         
            +
                  if((a - first) <= (last - a)) {
         
     | 
| 
      
 436 
     | 
    
         
            +
                    if(1 < (a - first)) {
         
     | 
| 
      
 437 
     | 
    
         
            +
                      STACK_PUSH(a, last, depth, -1);
         
     | 
| 
      
 438 
     | 
    
         
            +
                      last = a, depth += 1, limit = ss_ilg(a - first);
         
     | 
| 
      
 439 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 440 
     | 
    
         
            +
                      first = a, limit = -1;
         
     | 
| 
      
 441 
     | 
    
         
            +
                    }
         
     | 
| 
      
 442 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 443 
     | 
    
         
            +
                    if(1 < (last - a)) {
         
     | 
| 
      
 444 
     | 
    
         
            +
                      STACK_PUSH(first, a, depth + 1, ss_ilg(a - first));
         
     | 
| 
      
 445 
     | 
    
         
            +
                      first = a, limit = -1;
         
     | 
| 
      
 446 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 447 
     | 
    
         
            +
                      last = a, depth += 1, limit = ss_ilg(a - first);
         
     | 
| 
      
 448 
     | 
    
         
            +
                    }
         
     | 
| 
      
 449 
     | 
    
         
            +
                  }
         
     | 
| 
      
 450 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 451 
     | 
    
         
            +
                }
         
     | 
| 
      
 452 
     | 
    
         
            +
             
     | 
| 
      
 453 
     | 
    
         
            +
                /* choose pivot */
         
     | 
| 
      
 454 
     | 
    
         
            +
                a = ss_pivot(Td, PA, first, last);
         
     | 
| 
      
 455 
     | 
    
         
            +
                v = Td[PA[*a]];
         
     | 
| 
      
 456 
     | 
    
         
            +
                SWAP(*first, *a);
         
     | 
| 
      
 457 
     | 
    
         
            +
             
     | 
| 
      
 458 
     | 
    
         
            +
                /* partition */
         
     | 
| 
      
 459 
     | 
    
         
            +
                for(b = first; (++b < last) && ((x = Td[PA[*b]]) == v);) { }
         
     | 
| 
      
 460 
     | 
    
         
            +
                if(((a = b) < last) && (x < v)) {
         
     | 
| 
      
 461 
     | 
    
         
            +
                  for(; (++b < last) && ((x = Td[PA[*b]]) <= v);) {
         
     | 
| 
      
 462 
     | 
    
         
            +
                    if(x == v) { SWAP(*b, *a); ++a; }
         
     | 
| 
      
 463 
     | 
    
         
            +
                  }
         
     | 
| 
      
 464 
     | 
    
         
            +
                }
         
     | 
| 
      
 465 
     | 
    
         
            +
                for(c = last; (b < --c) && ((x = Td[PA[*c]]) == v);) { }
         
     | 
| 
      
 466 
     | 
    
         
            +
                if((b < (d = c)) && (x > v)) {
         
     | 
| 
      
 467 
     | 
    
         
            +
                  for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
         
     | 
| 
      
 468 
     | 
    
         
            +
                    if(x == v) { SWAP(*c, *d); --d; }
         
     | 
| 
      
 469 
     | 
    
         
            +
                  }
         
     | 
| 
      
 470 
     | 
    
         
            +
                }
         
     | 
| 
      
 471 
     | 
    
         
            +
                for(; b < c;) {
         
     | 
| 
      
 472 
     | 
    
         
            +
                  SWAP(*b, *c);
         
     | 
| 
      
 473 
     | 
    
         
            +
                  for(; (++b < c) && ((x = Td[PA[*b]]) <= v);) {
         
     | 
| 
      
 474 
     | 
    
         
            +
                    if(x == v) { SWAP(*b, *a); ++a; }
         
     | 
| 
      
 475 
     | 
    
         
            +
                  }
         
     | 
| 
      
 476 
     | 
    
         
            +
                  for(; (b < --c) && ((x = Td[PA[*c]]) >= v);) {
         
     | 
| 
      
 477 
     | 
    
         
            +
                    if(x == v) { SWAP(*c, *d); --d; }
         
     | 
| 
      
 478 
     | 
    
         
            +
                  }
         
     | 
| 
      
 479 
     | 
    
         
            +
                }
         
     | 
| 
      
 480 
     | 
    
         
            +
             
     | 
| 
      
 481 
     | 
    
         
            +
                if(a <= d) {
         
     | 
| 
      
 482 
     | 
    
         
            +
                  c = b - 1;
         
     | 
| 
      
 483 
     | 
    
         
            +
             
     | 
| 
      
 484 
     | 
    
         
            +
                  if((s = a - first) > (t = b - a)) { s = t; }
         
     | 
| 
      
 485 
     | 
    
         
            +
                  for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
         
     | 
| 
      
 486 
     | 
    
         
            +
                  if((s = d - c) > (t = last - d - 1)) { s = t; }
         
     | 
| 
      
 487 
     | 
    
         
            +
                  for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
         
     | 
| 
      
 488 
     | 
    
         
            +
             
     | 
| 
      
 489 
     | 
    
         
            +
                  a = first + (b - a), c = last - (d - c);
         
     | 
| 
      
 490 
     | 
    
         
            +
                  b = (v <= Td[PA[*a] - 1]) ? a : ss_partition(PA, a, c, depth);
         
     | 
| 
      
 491 
     | 
    
         
            +
             
     | 
| 
      
 492 
     | 
    
         
            +
                  if((a - first) <= (last - c)) {
         
     | 
| 
      
 493 
     | 
    
         
            +
                    if((last - c) <= (c - b)) {
         
     | 
| 
      
 494 
     | 
    
         
            +
                      STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
         
     | 
| 
      
 495 
     | 
    
         
            +
                      STACK_PUSH(c, last, depth, limit);
         
     | 
| 
      
 496 
     | 
    
         
            +
                      last = a;
         
     | 
| 
      
 497 
     | 
    
         
            +
                    } else if((a - first) <= (c - b)) {
         
     | 
| 
      
 498 
     | 
    
         
            +
                      STACK_PUSH(c, last, depth, limit);
         
     | 
| 
      
 499 
     | 
    
         
            +
                      STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
         
     | 
| 
      
 500 
     | 
    
         
            +
                      last = a;
         
     | 
| 
      
 501 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 502 
     | 
    
         
            +
                      STACK_PUSH(c, last, depth, limit);
         
     | 
| 
      
 503 
     | 
    
         
            +
                      STACK_PUSH(first, a, depth, limit);
         
     | 
| 
      
 504 
     | 
    
         
            +
                      first = b, last = c, depth += 1, limit = ss_ilg(c - b);
         
     | 
| 
      
 505 
     | 
    
         
            +
                    }
         
     | 
| 
      
 506 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 507 
     | 
    
         
            +
                    if((a - first) <= (c - b)) {
         
     | 
| 
      
 508 
     | 
    
         
            +
                      STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
         
     | 
| 
      
 509 
     | 
    
         
            +
                      STACK_PUSH(first, a, depth, limit);
         
     | 
| 
      
 510 
     | 
    
         
            +
                      first = c;
         
     | 
| 
      
 511 
     | 
    
         
            +
                    } else if((last - c) <= (c - b)) {
         
     | 
| 
      
 512 
     | 
    
         
            +
                      STACK_PUSH(first, a, depth, limit);
         
     | 
| 
      
 513 
     | 
    
         
            +
                      STACK_PUSH(b, c, depth + 1, ss_ilg(c - b));
         
     | 
| 
      
 514 
     | 
    
         
            +
                      first = c;
         
     | 
| 
      
 515 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 516 
     | 
    
         
            +
                      STACK_PUSH(first, a, depth, limit);
         
     | 
| 
      
 517 
     | 
    
         
            +
                      STACK_PUSH(c, last, depth, limit);
         
     | 
| 
      
 518 
     | 
    
         
            +
                      first = b, last = c, depth += 1, limit = ss_ilg(c - b);
         
     | 
| 
      
 519 
     | 
    
         
            +
                    }
         
     | 
| 
      
 520 
     | 
    
         
            +
                  }
         
     | 
| 
      
 521 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 522 
     | 
    
         
            +
                  limit += 1;
         
     | 
| 
      
 523 
     | 
    
         
            +
                  if(Td[PA[*first] - 1] < v) {
         
     | 
| 
      
 524 
     | 
    
         
            +
                    first = ss_partition(PA, first, last, depth);
         
     | 
| 
      
 525 
     | 
    
         
            +
                    limit = ss_ilg(last - first);
         
     | 
| 
      
 526 
     | 
    
         
            +
                  }
         
     | 
| 
      
 527 
     | 
    
         
            +
                  depth += 1;
         
     | 
| 
      
 528 
     | 
    
         
            +
                }
         
     | 
| 
      
 529 
     | 
    
         
            +
              }
         
     | 
| 
      
 530 
     | 
    
         
            +
            #undef STACK_SIZE
         
     | 
| 
      
 531 
     | 
    
         
            +
            }
         
     | 
| 
      
 532 
     | 
    
         
            +
             
     | 
| 
      
 533 
     | 
    
         
            +
            #endif /* (SS_BLOCKSIZE == 0) || (SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE) */
         
     | 
| 
      
 534 
     | 
    
         
            +
             
     | 
| 
      
 535 
     | 
    
         
            +
             
     | 
| 
      
 536 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 537 
     | 
    
         
            +
             
     | 
| 
      
 538 
     | 
    
         
            +
            #if SS_BLOCKSIZE != 0
         
     | 
| 
      
 539 
     | 
    
         
            +
             
     | 
| 
      
 540 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 541 
     | 
    
         
            +
            void
         
     | 
| 
      
 542 
     | 
    
         
            +
            ss_blockswap(int *a, int *b, int n) {
         
     | 
| 
      
 543 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 544 
     | 
    
         
            +
              for(; 0 < n; --n, ++a, ++b) {
         
     | 
| 
      
 545 
     | 
    
         
            +
                t = *a, *a = *b, *b = t;
         
     | 
| 
      
 546 
     | 
    
         
            +
              }
         
     | 
| 
      
 547 
     | 
    
         
            +
            }
         
     | 
| 
      
 548 
     | 
    
         
            +
             
     | 
| 
      
 549 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 550 
     | 
    
         
            +
            void
         
     | 
| 
      
 551 
     | 
    
         
            +
            ss_rotate(int *first, int *middle, int *last) {
         
     | 
| 
      
 552 
     | 
    
         
            +
              int *a, *b, t;
         
     | 
| 
      
 553 
     | 
    
         
            +
              int l, r;
         
     | 
| 
      
 554 
     | 
    
         
            +
              l = middle - first, r = last - middle;
         
     | 
| 
      
 555 
     | 
    
         
            +
              for(; (0 < l) && (0 < r);) {
         
     | 
| 
      
 556 
     | 
    
         
            +
                if(l == r) { ss_blockswap(first, middle, l); break; }
         
     | 
| 
      
 557 
     | 
    
         
            +
                if(l < r) {
         
     | 
| 
      
 558 
     | 
    
         
            +
                  a = last - 1, b = middle - 1;
         
     | 
| 
      
 559 
     | 
    
         
            +
                  t = *a;
         
     | 
| 
      
 560 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 561 
     | 
    
         
            +
                    *a-- = *b, *b-- = *a;
         
     | 
| 
      
 562 
     | 
    
         
            +
                    if(b < first) {
         
     | 
| 
      
 563 
     | 
    
         
            +
                      *a = t;
         
     | 
| 
      
 564 
     | 
    
         
            +
                      last = a;
         
     | 
| 
      
 565 
     | 
    
         
            +
                      if((r -= l + 1) <= l) { break; }
         
     | 
| 
      
 566 
     | 
    
         
            +
                      a -= 1, b = middle - 1;
         
     | 
| 
      
 567 
     | 
    
         
            +
                      t = *a;
         
     | 
| 
      
 568 
     | 
    
         
            +
                    }
         
     | 
| 
      
 569 
     | 
    
         
            +
                  } while(1);
         
     | 
| 
      
 570 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 571 
     | 
    
         
            +
                  a = first, b = middle;
         
     | 
| 
      
 572 
     | 
    
         
            +
                  t = *a;
         
     | 
| 
      
 573 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 574 
     | 
    
         
            +
                    *a++ = *b, *b++ = *a;
         
     | 
| 
      
 575 
     | 
    
         
            +
                    if(last <= b) {
         
     | 
| 
      
 576 
     | 
    
         
            +
                      *a = t;
         
     | 
| 
      
 577 
     | 
    
         
            +
                      first = a + 1;
         
     | 
| 
      
 578 
     | 
    
         
            +
                      if((l -= r + 1) <= r) { break; }
         
     | 
| 
      
 579 
     | 
    
         
            +
                      a += 1, b = middle;
         
     | 
| 
      
 580 
     | 
    
         
            +
                      t = *a;
         
     | 
| 
      
 581 
     | 
    
         
            +
                    }
         
     | 
| 
      
 582 
     | 
    
         
            +
                  } while(1);
         
     | 
| 
      
 583 
     | 
    
         
            +
                }
         
     | 
| 
      
 584 
     | 
    
         
            +
              }
         
     | 
| 
      
 585 
     | 
    
         
            +
            }
         
     | 
| 
      
 586 
     | 
    
         
            +
             
     | 
| 
      
 587 
     | 
    
         
            +
             
     | 
| 
      
 588 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 589 
     | 
    
         
            +
             
     | 
| 
      
 590 
     | 
    
         
            +
            static
         
     | 
| 
      
 591 
     | 
    
         
            +
            void
         
     | 
| 
      
 592 
     | 
    
         
            +
            ss_inplacemerge(const unsigned char *T, const int *PA,
         
     | 
| 
      
 593 
     | 
    
         
            +
                            int *first, int *middle, int *last,
         
     | 
| 
      
 594 
     | 
    
         
            +
                            int depth) {
         
     | 
| 
      
 595 
     | 
    
         
            +
              const int *p;
         
     | 
| 
      
 596 
     | 
    
         
            +
              int *a, *b;
         
     | 
| 
      
 597 
     | 
    
         
            +
              int len, half;
         
     | 
| 
      
 598 
     | 
    
         
            +
              int q, r;
         
     | 
| 
      
 599 
     | 
    
         
            +
              int x;
         
     | 
| 
      
 600 
     | 
    
         
            +
             
     | 
| 
      
 601 
     | 
    
         
            +
              for(;;) {
         
     | 
| 
      
 602 
     | 
    
         
            +
                if(*(last - 1) < 0) { x = 1; p = PA + ~*(last - 1); }
         
     | 
| 
      
 603 
     | 
    
         
            +
                else                { x = 0; p = PA +  *(last - 1); }
         
     | 
| 
      
 604 
     | 
    
         
            +
                for(a = first, len = middle - first, half = len >> 1, r = -1;
         
     | 
| 
      
 605 
     | 
    
         
            +
                    0 < len;
         
     | 
| 
      
 606 
     | 
    
         
            +
                    len = half, half >>= 1) {
         
     | 
| 
      
 607 
     | 
    
         
            +
                  b = a + half;
         
     | 
| 
      
 608 
     | 
    
         
            +
                  q = ss_compare(T, PA + ((0 <= *b) ? *b : ~*b), p, depth);
         
     | 
| 
      
 609 
     | 
    
         
            +
                  if(q < 0) {
         
     | 
| 
      
 610 
     | 
    
         
            +
                    a = b + 1;
         
     | 
| 
      
 611 
     | 
    
         
            +
                    half -= (len & 1) ^ 1;
         
     | 
| 
      
 612 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 613 
     | 
    
         
            +
                    r = q;
         
     | 
| 
      
 614 
     | 
    
         
            +
                  }
         
     | 
| 
      
 615 
     | 
    
         
            +
                }
         
     | 
| 
      
 616 
     | 
    
         
            +
                if(a < middle) {
         
     | 
| 
      
 617 
     | 
    
         
            +
                  if(r == 0) { *a = ~*a; }
         
     | 
| 
      
 618 
     | 
    
         
            +
                  ss_rotate(a, middle, last);
         
     | 
| 
      
 619 
     | 
    
         
            +
                  last -= middle - a;
         
     | 
| 
      
 620 
     | 
    
         
            +
                  middle = a;
         
     | 
| 
      
 621 
     | 
    
         
            +
                  if(first == middle) { break; }
         
     | 
| 
      
 622 
     | 
    
         
            +
                }
         
     | 
| 
      
 623 
     | 
    
         
            +
                --last;
         
     | 
| 
      
 624 
     | 
    
         
            +
                if(x != 0) { while(*--last < 0) { } }
         
     | 
| 
      
 625 
     | 
    
         
            +
                if(middle == last) { break; }
         
     | 
| 
      
 626 
     | 
    
         
            +
              }
         
     | 
| 
      
 627 
     | 
    
         
            +
            }
         
     | 
| 
      
 628 
     | 
    
         
            +
             
     | 
| 
      
 629 
     | 
    
         
            +
             
     | 
| 
      
 630 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 631 
     | 
    
         
            +
             
     | 
| 
      
 632 
     | 
    
         
            +
            /* Merge-forward with internal buffer. */
         
     | 
| 
      
 633 
     | 
    
         
            +
            static
         
     | 
| 
      
 634 
     | 
    
         
            +
            void
         
     | 
| 
      
 635 
     | 
    
         
            +
            ss_mergeforward(const unsigned char *T, const int *PA,
         
     | 
| 
      
 636 
     | 
    
         
            +
                            int *first, int *middle, int *last,
         
     | 
| 
      
 637 
     | 
    
         
            +
                            int *buf, int depth) {
         
     | 
| 
      
 638 
     | 
    
         
            +
              int *a, *b, *c, *bufend;
         
     | 
| 
      
 639 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 640 
     | 
    
         
            +
              int r;
         
     | 
| 
      
 641 
     | 
    
         
            +
             
     | 
| 
      
 642 
     | 
    
         
            +
              bufend = buf + (middle - first) - 1;
         
     | 
| 
      
 643 
     | 
    
         
            +
              ss_blockswap(buf, first, middle - first);
         
     | 
| 
      
 644 
     | 
    
         
            +
             
     | 
| 
      
 645 
     | 
    
         
            +
              for(t = *(a = first), b = buf, c = middle;;) {
         
     | 
| 
      
 646 
     | 
    
         
            +
                r = ss_compare(T, PA + *b, PA + *c, depth);
         
     | 
| 
      
 647 
     | 
    
         
            +
                if(r < 0) {
         
     | 
| 
      
 648 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 649 
     | 
    
         
            +
                    *a++ = *b;
         
     | 
| 
      
 650 
     | 
    
         
            +
                    if(bufend <= b) { *bufend = t; return; }
         
     | 
| 
      
 651 
     | 
    
         
            +
                    *b++ = *a;
         
     | 
| 
      
 652 
     | 
    
         
            +
                  } while(*b < 0);
         
     | 
| 
      
 653 
     | 
    
         
            +
                } else if(r > 0) {
         
     | 
| 
      
 654 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 655 
     | 
    
         
            +
                    *a++ = *c, *c++ = *a;
         
     | 
| 
      
 656 
     | 
    
         
            +
                    if(last <= c) {
         
     | 
| 
      
 657 
     | 
    
         
            +
                      while(b < bufend) { *a++ = *b, *b++ = *a; }
         
     | 
| 
      
 658 
     | 
    
         
            +
                      *a = *b, *b = t;
         
     | 
| 
      
 659 
     | 
    
         
            +
                      return;
         
     | 
| 
      
 660 
     | 
    
         
            +
                    }
         
     | 
| 
      
 661 
     | 
    
         
            +
                  } while(*c < 0);
         
     | 
| 
      
 662 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 663 
     | 
    
         
            +
                  *c = ~*c;
         
     | 
| 
      
 664 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 665 
     | 
    
         
            +
                    *a++ = *b;
         
     | 
| 
      
 666 
     | 
    
         
            +
                    if(bufend <= b) { *bufend = t; return; }
         
     | 
| 
      
 667 
     | 
    
         
            +
                    *b++ = *a;
         
     | 
| 
      
 668 
     | 
    
         
            +
                  } while(*b < 0);
         
     | 
| 
      
 669 
     | 
    
         
            +
             
     | 
| 
      
 670 
     | 
    
         
            +
                  do {
         
     | 
| 
      
 671 
     | 
    
         
            +
                    *a++ = *c, *c++ = *a;
         
     | 
| 
      
 672 
     | 
    
         
            +
                    if(last <= c) {
         
     | 
| 
      
 673 
     | 
    
         
            +
                      while(b < bufend) { *a++ = *b, *b++ = *a; }
         
     | 
| 
      
 674 
     | 
    
         
            +
                      *a = *b, *b = t;
         
     | 
| 
      
 675 
     | 
    
         
            +
                      return;
         
     | 
| 
      
 676 
     | 
    
         
            +
                    }
         
     | 
| 
      
 677 
     | 
    
         
            +
                  } while(*c < 0);
         
     | 
| 
      
 678 
     | 
    
         
            +
                }
         
     | 
| 
      
 679 
     | 
    
         
            +
              }
         
     | 
| 
      
 680 
     | 
    
         
            +
            }
         
     | 
| 
      
 681 
     | 
    
         
            +
             
     | 
| 
      
 682 
     | 
    
         
            +
            /* Merge-backward with internal buffer. */
         
     | 
| 
      
 683 
     | 
    
         
            +
            static
         
     | 
| 
      
 684 
     | 
    
         
            +
            void
         
     | 
| 
      
 685 
     | 
    
         
            +
            ss_mergebackward(const unsigned char *T, const int *PA,
         
     | 
| 
      
 686 
     | 
    
         
            +
                             int *first, int *middle, int *last,
         
     | 
| 
      
 687 
     | 
    
         
            +
                             int *buf, int depth) {
         
     | 
| 
      
 688 
     | 
    
         
            +
              const int *p1, *p2;
         
     | 
| 
      
 689 
     | 
    
         
            +
              int *a, *b, *c, *bufend;
         
     | 
| 
      
 690 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 691 
     | 
    
         
            +
              int r;
         
     | 
| 
      
 692 
     | 
    
         
            +
              int x;
         
     | 
| 
      
 693 
     | 
    
         
            +
             
     | 
| 
      
 694 
     | 
    
         
            +
              bufend = buf + (last - middle) - 1;
         
     | 
| 
      
 695 
     | 
    
         
            +
              ss_blockswap(buf, middle, last - middle);
         
     | 
| 
      
 696 
     | 
    
         
            +
             
     | 
| 
      
 697 
     | 
    
         
            +
              x = 0;
         
     | 
| 
      
 698 
     | 
    
         
            +
              if(*bufend < 0)       { p1 = PA + ~*bufend; x |= 1; }
         
     | 
| 
      
 699 
     | 
    
         
            +
              else                  { p1 = PA +  *bufend; }
         
     | 
| 
      
 700 
     | 
    
         
            +
              if(*(middle - 1) < 0) { p2 = PA + ~*(middle - 1); x |= 2; }
         
     | 
| 
      
 701 
     | 
    
         
            +
              else                  { p2 = PA +  *(middle - 1); }
         
     | 
| 
      
 702 
     | 
    
         
            +
              for(t = *(a = last - 1), b = bufend, c = middle - 1;;) {
         
     | 
| 
      
 703 
     | 
    
         
            +
                r = ss_compare(T, p1, p2, depth);
         
     | 
| 
      
 704 
     | 
    
         
            +
                if(0 < r) {
         
     | 
| 
      
 705 
     | 
    
         
            +
                  if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
         
     | 
| 
      
 706 
     | 
    
         
            +
                  *a-- = *b;
         
     | 
| 
      
 707 
     | 
    
         
            +
                  if(b <= buf) { *buf = t; break; }
         
     | 
| 
      
 708 
     | 
    
         
            +
                  *b-- = *a;
         
     | 
| 
      
 709 
     | 
    
         
            +
                  if(*b < 0) { p1 = PA + ~*b; x |= 1; }
         
     | 
| 
      
 710 
     | 
    
         
            +
                  else       { p1 = PA +  *b; }
         
     | 
| 
      
 711 
     | 
    
         
            +
                } else if(r < 0) {
         
     | 
| 
      
 712 
     | 
    
         
            +
                  if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
         
     | 
| 
      
 713 
     | 
    
         
            +
                  *a-- = *c, *c-- = *a;
         
     | 
| 
      
 714 
     | 
    
         
            +
                  if(c < first) {
         
     | 
| 
      
 715 
     | 
    
         
            +
                    while(buf < b) { *a-- = *b, *b-- = *a; }
         
     | 
| 
      
 716 
     | 
    
         
            +
                    *a = *b, *b = t;
         
     | 
| 
      
 717 
     | 
    
         
            +
                    break;
         
     | 
| 
      
 718 
     | 
    
         
            +
                  }
         
     | 
| 
      
 719 
     | 
    
         
            +
                  if(*c < 0) { p2 = PA + ~*c; x |= 2; }
         
     | 
| 
      
 720 
     | 
    
         
            +
                  else       { p2 = PA +  *c; }
         
     | 
| 
      
 721 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 722 
     | 
    
         
            +
                  if(x & 1) { do { *a-- = *b, *b-- = *a; } while(*b < 0); x ^= 1; }
         
     | 
| 
      
 723 
     | 
    
         
            +
                  *a-- = ~*b;
         
     | 
| 
      
 724 
     | 
    
         
            +
                  if(b <= buf) { *buf = t; break; }
         
     | 
| 
      
 725 
     | 
    
         
            +
                  *b-- = *a;
         
     | 
| 
      
 726 
     | 
    
         
            +
                  if(x & 2) { do { *a-- = *c, *c-- = *a; } while(*c < 0); x ^= 2; }
         
     | 
| 
      
 727 
     | 
    
         
            +
                  *a-- = *c, *c-- = *a;
         
     | 
| 
      
 728 
     | 
    
         
            +
                  if(c < first) {
         
     | 
| 
      
 729 
     | 
    
         
            +
                    while(buf < b) { *a-- = *b, *b-- = *a; }
         
     | 
| 
      
 730 
     | 
    
         
            +
                    *a = *b, *b = t;
         
     | 
| 
      
 731 
     | 
    
         
            +
                    break;
         
     | 
| 
      
 732 
     | 
    
         
            +
                  }
         
     | 
| 
      
 733 
     | 
    
         
            +
                  if(*b < 0) { p1 = PA + ~*b; x |= 1; }
         
     | 
| 
      
 734 
     | 
    
         
            +
                  else       { p1 = PA +  *b; }
         
     | 
| 
      
 735 
     | 
    
         
            +
                  if(*c < 0) { p2 = PA + ~*c; x |= 2; }
         
     | 
| 
      
 736 
     | 
    
         
            +
                  else       { p2 = PA +  *c; }
         
     | 
| 
      
 737 
     | 
    
         
            +
                }
         
     | 
| 
      
 738 
     | 
    
         
            +
              }
         
     | 
| 
      
 739 
     | 
    
         
            +
            }
         
     | 
| 
      
 740 
     | 
    
         
            +
             
     | 
| 
      
 741 
     | 
    
         
            +
            /* D&C based merge. */
         
     | 
| 
      
 742 
     | 
    
         
            +
            static
         
     | 
| 
      
 743 
     | 
    
         
            +
            void
         
     | 
| 
      
 744 
     | 
    
         
            +
            ss_swapmerge(const unsigned char *T, const int *PA,
         
     | 
| 
      
 745 
     | 
    
         
            +
                         int *first, int *middle, int *last,
         
     | 
| 
      
 746 
     | 
    
         
            +
                         int *buf, int bufsize, int depth) {
         
     | 
| 
      
 747 
     | 
    
         
            +
            #define STACK_SIZE SS_SMERGE_STACKSIZE
         
     | 
| 
      
 748 
     | 
    
         
            +
            #define GETIDX(a) ((0 <= (a)) ? (a) : (~(a)))
         
     | 
| 
      
 749 
     | 
    
         
            +
            #define MERGE_CHECK(a, b, c)\
         
     | 
| 
      
 750 
     | 
    
         
            +
              do {\
         
     | 
| 
      
 751 
     | 
    
         
            +
                if(((c) & 1) ||\
         
     | 
| 
      
 752 
     | 
    
         
            +
                   (((c) & 2) && (ss_compare(T, PA + GETIDX(*((a) - 1)), PA + *(a), depth) == 0))) {\
         
     | 
| 
      
 753 
     | 
    
         
            +
                  *(a) = ~*(a);\
         
     | 
| 
      
 754 
     | 
    
         
            +
                }\
         
     | 
| 
      
 755 
     | 
    
         
            +
                if(((c) & 4) && ((ss_compare(T, PA + GETIDX(*((b) - 1)), PA + *(b), depth) == 0))) {\
         
     | 
| 
      
 756 
     | 
    
         
            +
                  *(b) = ~*(b);\
         
     | 
| 
      
 757 
     | 
    
         
            +
                }\
         
     | 
| 
      
 758 
     | 
    
         
            +
              } while(0)
         
     | 
| 
      
 759 
     | 
    
         
            +
              struct { int *a, *b, *c; int d; } stack[STACK_SIZE];
         
     | 
| 
      
 760 
     | 
    
         
            +
              int *l, *r, *lm, *rm;
         
     | 
| 
      
 761 
     | 
    
         
            +
              int m, len, half;
         
     | 
| 
      
 762 
     | 
    
         
            +
              int ssize;
         
     | 
| 
      
 763 
     | 
    
         
            +
              int check, next;
         
     | 
| 
      
 764 
     | 
    
         
            +
             
     | 
| 
      
 765 
     | 
    
         
            +
              for(check = 0, ssize = 0;;) {
         
     | 
| 
      
 766 
     | 
    
         
            +
                if((last - middle) <= bufsize) {
         
     | 
| 
      
 767 
     | 
    
         
            +
                  if((first < middle) && (middle < last)) {
         
     | 
| 
      
 768 
     | 
    
         
            +
                    ss_mergebackward(T, PA, first, middle, last, buf, depth);
         
     | 
| 
      
 769 
     | 
    
         
            +
                  }
         
     | 
| 
      
 770 
     | 
    
         
            +
                  MERGE_CHECK(first, last, check);
         
     | 
| 
      
 771 
     | 
    
         
            +
                  STACK_POP(first, middle, last, check);
         
     | 
| 
      
 772 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 773 
     | 
    
         
            +
                }
         
     | 
| 
      
 774 
     | 
    
         
            +
             
     | 
| 
      
 775 
     | 
    
         
            +
                if((middle - first) <= bufsize) {
         
     | 
| 
      
 776 
     | 
    
         
            +
                  if(first < middle) {
         
     | 
| 
      
 777 
     | 
    
         
            +
                    ss_mergeforward(T, PA, first, middle, last, buf, depth);
         
     | 
| 
      
 778 
     | 
    
         
            +
                  }
         
     | 
| 
      
 779 
     | 
    
         
            +
                  MERGE_CHECK(first, last, check);
         
     | 
| 
      
 780 
     | 
    
         
            +
                  STACK_POP(first, middle, last, check);
         
     | 
| 
      
 781 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 782 
     | 
    
         
            +
                }
         
     | 
| 
      
 783 
     | 
    
         
            +
             
     | 
| 
      
 784 
     | 
    
         
            +
                for(m = 0, len = MIN(middle - first, last - middle), half = len >> 1;
         
     | 
| 
      
 785 
     | 
    
         
            +
                    0 < len;
         
     | 
| 
      
 786 
     | 
    
         
            +
                    len = half, half >>= 1) {
         
     | 
| 
      
 787 
     | 
    
         
            +
                  if(ss_compare(T, PA + GETIDX(*(middle + m + half)),
         
     | 
| 
      
 788 
     | 
    
         
            +
                                   PA + GETIDX(*(middle - m - half - 1)), depth) < 0) {
         
     | 
| 
      
 789 
     | 
    
         
            +
                    m += half + 1;
         
     | 
| 
      
 790 
     | 
    
         
            +
                    half -= (len & 1) ^ 1;
         
     | 
| 
      
 791 
     | 
    
         
            +
                  }
         
     | 
| 
      
 792 
     | 
    
         
            +
                }
         
     | 
| 
      
 793 
     | 
    
         
            +
             
     | 
| 
      
 794 
     | 
    
         
            +
                if(0 < m) {
         
     | 
| 
      
 795 
     | 
    
         
            +
                  lm = middle - m, rm = middle + m;
         
     | 
| 
      
 796 
     | 
    
         
            +
                  ss_blockswap(lm, middle, m);
         
     | 
| 
      
 797 
     | 
    
         
            +
                  l = r = middle, next = 0;
         
     | 
| 
      
 798 
     | 
    
         
            +
                  if(rm < last) {
         
     | 
| 
      
 799 
     | 
    
         
            +
                    if(*rm < 0) {
         
     | 
| 
      
 800 
     | 
    
         
            +
                      *rm = ~*rm;
         
     | 
| 
      
 801 
     | 
    
         
            +
                      if(first < lm) { for(; *--l < 0;) { } next |= 4; }
         
     | 
| 
      
 802 
     | 
    
         
            +
                      next |= 1;
         
     | 
| 
      
 803 
     | 
    
         
            +
                    } else if(first < lm) {
         
     | 
| 
      
 804 
     | 
    
         
            +
                      for(; *r < 0; ++r) { }
         
     | 
| 
      
 805 
     | 
    
         
            +
                      next |= 2;
         
     | 
| 
      
 806 
     | 
    
         
            +
                    }
         
     | 
| 
      
 807 
     | 
    
         
            +
                  }
         
     | 
| 
      
 808 
     | 
    
         
            +
             
     | 
| 
      
 809 
     | 
    
         
            +
                  if((l - first) <= (last - r)) {
         
     | 
| 
      
 810 
     | 
    
         
            +
                    STACK_PUSH(r, rm, last, (next & 3) | (check & 4));
         
     | 
| 
      
 811 
     | 
    
         
            +
                    middle = lm, last = l, check = (check & 3) | (next & 4);
         
     | 
| 
      
 812 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 813 
     | 
    
         
            +
                    if((next & 2) && (r == middle)) { next ^= 6; }
         
     | 
| 
      
 814 
     | 
    
         
            +
                    STACK_PUSH(first, lm, l, (check & 3) | (next & 4));
         
     | 
| 
      
 815 
     | 
    
         
            +
                    first = r, middle = rm, check = (next & 3) | (check & 4);
         
     | 
| 
      
 816 
     | 
    
         
            +
                  }
         
     | 
| 
      
 817 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 818 
     | 
    
         
            +
                  if(ss_compare(T, PA + GETIDX(*(middle - 1)), PA + *middle, depth) == 0) {
         
     | 
| 
      
 819 
     | 
    
         
            +
                    *middle = ~*middle;
         
     | 
| 
      
 820 
     | 
    
         
            +
                  }
         
     | 
| 
      
 821 
     | 
    
         
            +
                  MERGE_CHECK(first, last, check);
         
     | 
| 
      
 822 
     | 
    
         
            +
                  STACK_POP(first, middle, last, check);
         
     | 
| 
      
 823 
     | 
    
         
            +
                }
         
     | 
| 
      
 824 
     | 
    
         
            +
              }
         
     | 
| 
      
 825 
     | 
    
         
            +
            #undef STACK_SIZE
         
     | 
| 
      
 826 
     | 
    
         
            +
            }
         
     | 
| 
      
 827 
     | 
    
         
            +
             
     | 
| 
      
 828 
     | 
    
         
            +
            #endif /* SS_BLOCKSIZE != 0 */
         
     | 
| 
      
 829 
     | 
    
         
            +
             
     | 
| 
      
 830 
     | 
    
         
            +
             
     | 
| 
      
 831 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 832 
     | 
    
         
            +
             
     | 
| 
      
 833 
     | 
    
         
            +
            /* Substring sort */
         
     | 
| 
      
 834 
     | 
    
         
            +
            static
         
     | 
| 
      
 835 
     | 
    
         
            +
            void
         
     | 
| 
      
 836 
     | 
    
         
            +
            sssort(const unsigned char *T, const int *PA,
         
     | 
| 
      
 837 
     | 
    
         
            +
                   int *first, int *last,
         
     | 
| 
      
 838 
     | 
    
         
            +
                   int *buf, int bufsize,
         
     | 
| 
      
 839 
     | 
    
         
            +
                   int depth, int n, int lastsuffix) {
         
     | 
| 
      
 840 
     | 
    
         
            +
              int *a;
         
     | 
| 
      
 841 
     | 
    
         
            +
            #if SS_BLOCKSIZE != 0
         
     | 
| 
      
 842 
     | 
    
         
            +
              int *b, *middle, *curbuf;
         
     | 
| 
      
 843 
     | 
    
         
            +
              int j, k, curbufsize, limit;
         
     | 
| 
      
 844 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 845 
     | 
    
         
            +
              int i;
         
     | 
| 
      
 846 
     | 
    
         
            +
             
     | 
| 
      
 847 
     | 
    
         
            +
              if(lastsuffix != 0) { ++first; }
         
     | 
| 
      
 848 
     | 
    
         
            +
             
     | 
| 
      
 849 
     | 
    
         
            +
            #if SS_BLOCKSIZE == 0
         
     | 
| 
      
 850 
     | 
    
         
            +
              ss_mintrosort(T, PA, first, last, depth);
         
     | 
| 
      
 851 
     | 
    
         
            +
            #else
         
     | 
| 
      
 852 
     | 
    
         
            +
              if((bufsize < SS_BLOCKSIZE) &&
         
     | 
| 
      
 853 
     | 
    
         
            +
                  (bufsize < (last - first)) &&
         
     | 
| 
      
 854 
     | 
    
         
            +
                  (bufsize < (limit = ss_isqrt(last - first)))) {
         
     | 
| 
      
 855 
     | 
    
         
            +
                if(SS_BLOCKSIZE < limit) { limit = SS_BLOCKSIZE; }
         
     | 
| 
      
 856 
     | 
    
         
            +
                buf = middle = last - limit, bufsize = limit;
         
     | 
| 
      
 857 
     | 
    
         
            +
              } else {
         
     | 
| 
      
 858 
     | 
    
         
            +
                middle = last, limit = 0;
         
     | 
| 
      
 859 
     | 
    
         
            +
              }
         
     | 
| 
      
 860 
     | 
    
         
            +
              for(a = first, i = 0; SS_BLOCKSIZE < (middle - a); a += SS_BLOCKSIZE, ++i) {
         
     | 
| 
      
 861 
     | 
    
         
            +
            #if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
         
     | 
| 
      
 862 
     | 
    
         
            +
                ss_mintrosort(T, PA, a, a + SS_BLOCKSIZE, depth);
         
     | 
| 
      
 863 
     | 
    
         
            +
            #elif 1 < SS_BLOCKSIZE
         
     | 
| 
      
 864 
     | 
    
         
            +
                ss_insertionsort(T, PA, a, a + SS_BLOCKSIZE, depth);
         
     | 
| 
      
 865 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 866 
     | 
    
         
            +
                curbufsize = last - (a + SS_BLOCKSIZE);
         
     | 
| 
      
 867 
     | 
    
         
            +
                curbuf = a + SS_BLOCKSIZE;
         
     | 
| 
      
 868 
     | 
    
         
            +
                if(curbufsize <= bufsize) { curbufsize = bufsize, curbuf = buf; }
         
     | 
| 
      
 869 
     | 
    
         
            +
                for(b = a, k = SS_BLOCKSIZE, j = i; j & 1; b -= k, k <<= 1, j >>= 1) {
         
     | 
| 
      
 870 
     | 
    
         
            +
                  ss_swapmerge(T, PA, b - k, b, b + k, curbuf, curbufsize, depth);
         
     | 
| 
      
 871 
     | 
    
         
            +
                }
         
     | 
| 
      
 872 
     | 
    
         
            +
              }
         
     | 
| 
      
 873 
     | 
    
         
            +
            #if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
         
     | 
| 
      
 874 
     | 
    
         
            +
              ss_mintrosort(T, PA, a, middle, depth);
         
     | 
| 
      
 875 
     | 
    
         
            +
            #elif 1 < SS_BLOCKSIZE
         
     | 
| 
      
 876 
     | 
    
         
            +
              ss_insertionsort(T, PA, a, middle, depth);
         
     | 
| 
      
 877 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 878 
     | 
    
         
            +
              for(k = SS_BLOCKSIZE; i != 0; k <<= 1, i >>= 1) {
         
     | 
| 
      
 879 
     | 
    
         
            +
                if(i & 1) {
         
     | 
| 
      
 880 
     | 
    
         
            +
                  ss_swapmerge(T, PA, a - k, a, middle, buf, bufsize, depth);
         
     | 
| 
      
 881 
     | 
    
         
            +
                  a -= k;
         
     | 
| 
      
 882 
     | 
    
         
            +
                }
         
     | 
| 
      
 883 
     | 
    
         
            +
              }
         
     | 
| 
      
 884 
     | 
    
         
            +
              if(limit != 0) {
         
     | 
| 
      
 885 
     | 
    
         
            +
            #if SS_INSERTIONSORT_THRESHOLD < SS_BLOCKSIZE
         
     | 
| 
      
 886 
     | 
    
         
            +
                ss_mintrosort(T, PA, middle, last, depth);
         
     | 
| 
      
 887 
     | 
    
         
            +
            #elif 1 < SS_BLOCKSIZE
         
     | 
| 
      
 888 
     | 
    
         
            +
                ss_insertionsort(T, PA, middle, last, depth);
         
     | 
| 
      
 889 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 890 
     | 
    
         
            +
                ss_inplacemerge(T, PA, first, middle, last, depth);
         
     | 
| 
      
 891 
     | 
    
         
            +
              }
         
     | 
| 
      
 892 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 893 
     | 
    
         
            +
             
     | 
| 
      
 894 
     | 
    
         
            +
              if(lastsuffix != 0) {
         
     | 
| 
      
 895 
     | 
    
         
            +
                /* Insert last type B* suffix. */
         
     | 
| 
      
 896 
     | 
    
         
            +
                int PAi[2]; PAi[0] = PA[*(first - 1)], PAi[1] = n - 2;
         
     | 
| 
      
 897 
     | 
    
         
            +
                for(a = first, i = *(first - 1);
         
     | 
| 
      
 898 
     | 
    
         
            +
                    (a < last) && ((*a < 0) || (0 < ss_compare(T, &(PAi[0]), PA + *a, depth)));
         
     | 
| 
      
 899 
     | 
    
         
            +
                    ++a) {
         
     | 
| 
      
 900 
     | 
    
         
            +
                  *(a - 1) = *a;
         
     | 
| 
      
 901 
     | 
    
         
            +
                }
         
     | 
| 
      
 902 
     | 
    
         
            +
                *(a - 1) = i;
         
     | 
| 
      
 903 
     | 
    
         
            +
              }
         
     | 
| 
      
 904 
     | 
    
         
            +
            }
         
     | 
| 
      
 905 
     | 
    
         
            +
             
     | 
| 
      
 906 
     | 
    
         
            +
             
     | 
| 
      
 907 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 908 
     | 
    
         
            +
             
     | 
| 
      
 909 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 910 
     | 
    
         
            +
            int
         
     | 
| 
      
 911 
     | 
    
         
            +
            tr_ilg(int n) {
         
     | 
| 
      
 912 
     | 
    
         
            +
              return (n & 0xffff0000) ?
         
     | 
| 
      
 913 
     | 
    
         
            +
                      ((n & 0xff000000) ?
         
     | 
| 
      
 914 
     | 
    
         
            +
                        24 + lg_table[(n >> 24) & 0xff] :
         
     | 
| 
      
 915 
     | 
    
         
            +
                        16 + lg_table[(n >> 16) & 0xff]) :
         
     | 
| 
      
 916 
     | 
    
         
            +
                      ((n & 0x0000ff00) ?
         
     | 
| 
      
 917 
     | 
    
         
            +
                         8 + lg_table[(n >>  8) & 0xff] :
         
     | 
| 
      
 918 
     | 
    
         
            +
                         0 + lg_table[(n >>  0) & 0xff]);
         
     | 
| 
      
 919 
     | 
    
         
            +
            }
         
     | 
| 
      
 920 
     | 
    
         
            +
             
     | 
| 
      
 921 
     | 
    
         
            +
             
     | 
| 
      
 922 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 923 
     | 
    
         
            +
             
     | 
| 
      
 924 
     | 
    
         
            +
            /* Simple insertionsort for small size groups. */
         
     | 
| 
      
 925 
     | 
    
         
            +
            static
         
     | 
| 
      
 926 
     | 
    
         
            +
            void
         
     | 
| 
      
 927 
     | 
    
         
            +
            tr_insertionsort(const int *ISAd, int *first, int *last) {
         
     | 
| 
      
 928 
     | 
    
         
            +
              int *a, *b;
         
     | 
| 
      
 929 
     | 
    
         
            +
              int t, r;
         
     | 
| 
      
 930 
     | 
    
         
            +
             
     | 
| 
      
 931 
     | 
    
         
            +
              for(a = first + 1; a < last; ++a) {
         
     | 
| 
      
 932 
     | 
    
         
            +
                for(t = *a, b = a - 1; 0 > (r = ISAd[t] - ISAd[*b]);) {
         
     | 
| 
      
 933 
     | 
    
         
            +
                  do { *(b + 1) = *b; } while((first <= --b) && (*b < 0));
         
     | 
| 
      
 934 
     | 
    
         
            +
                  if(b < first) { break; }
         
     | 
| 
      
 935 
     | 
    
         
            +
                }
         
     | 
| 
      
 936 
     | 
    
         
            +
                if(r == 0) { *b = ~*b; }
         
     | 
| 
      
 937 
     | 
    
         
            +
                *(b + 1) = t;
         
     | 
| 
      
 938 
     | 
    
         
            +
              }
         
     | 
| 
      
 939 
     | 
    
         
            +
            }
         
     | 
| 
      
 940 
     | 
    
         
            +
             
     | 
| 
      
 941 
     | 
    
         
            +
             
     | 
| 
      
 942 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 943 
     | 
    
         
            +
             
     | 
| 
      
 944 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 945 
     | 
    
         
            +
            void
         
     | 
| 
      
 946 
     | 
    
         
            +
            tr_fixdown(const int *ISAd, int *SA, int i, int size) {
         
     | 
| 
      
 947 
     | 
    
         
            +
              int j, k;
         
     | 
| 
      
 948 
     | 
    
         
            +
              int v;
         
     | 
| 
      
 949 
     | 
    
         
            +
              int c, d, e;
         
     | 
| 
      
 950 
     | 
    
         
            +
             
     | 
| 
      
 951 
     | 
    
         
            +
              for(v = SA[i], c = ISAd[v]; (j = 2 * i + 1) < size; SA[i] = SA[k], i = k) {
         
     | 
| 
      
 952 
     | 
    
         
            +
                d = ISAd[SA[k = j++]];
         
     | 
| 
      
 953 
     | 
    
         
            +
                if(d < (e = ISAd[SA[j]])) { k = j; d = e; }
         
     | 
| 
      
 954 
     | 
    
         
            +
                if(d <= c) { break; }
         
     | 
| 
      
 955 
     | 
    
         
            +
              }
         
     | 
| 
      
 956 
     | 
    
         
            +
              SA[i] = v;
         
     | 
| 
      
 957 
     | 
    
         
            +
            }
         
     | 
| 
      
 958 
     | 
    
         
            +
             
     | 
| 
      
 959 
     | 
    
         
            +
            /* Simple top-down heapsort. */
         
     | 
| 
      
 960 
     | 
    
         
            +
            static
         
     | 
| 
      
 961 
     | 
    
         
            +
            void
         
     | 
| 
      
 962 
     | 
    
         
            +
            tr_heapsort(const int *ISAd, int *SA, int size) {
         
     | 
| 
      
 963 
     | 
    
         
            +
              int i, m;
         
     | 
| 
      
 964 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 965 
     | 
    
         
            +
             
     | 
| 
      
 966 
     | 
    
         
            +
              m = size;
         
     | 
| 
      
 967 
     | 
    
         
            +
              if((size % 2) == 0) {
         
     | 
| 
      
 968 
     | 
    
         
            +
                m--;
         
     | 
| 
      
 969 
     | 
    
         
            +
                if(ISAd[SA[m / 2]] < ISAd[SA[m]]) { SWAP(SA[m], SA[m / 2]); }
         
     | 
| 
      
 970 
     | 
    
         
            +
              }
         
     | 
| 
      
 971 
     | 
    
         
            +
             
     | 
| 
      
 972 
     | 
    
         
            +
              for(i = m / 2 - 1; 0 <= i; --i) { tr_fixdown(ISAd, SA, i, m); }
         
     | 
| 
      
 973 
     | 
    
         
            +
              if((size % 2) == 0) { SWAP(SA[0], SA[m]); tr_fixdown(ISAd, SA, 0, m); }
         
     | 
| 
      
 974 
     | 
    
         
            +
              for(i = m - 1; 0 < i; --i) {
         
     | 
| 
      
 975 
     | 
    
         
            +
                t = SA[0], SA[0] = SA[i];
         
     | 
| 
      
 976 
     | 
    
         
            +
                tr_fixdown(ISAd, SA, 0, i);
         
     | 
| 
      
 977 
     | 
    
         
            +
                SA[i] = t;
         
     | 
| 
      
 978 
     | 
    
         
            +
              }
         
     | 
| 
      
 979 
     | 
    
         
            +
            }
         
     | 
| 
      
 980 
     | 
    
         
            +
             
     | 
| 
      
 981 
     | 
    
         
            +
             
     | 
| 
      
 982 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 983 
     | 
    
         
            +
             
     | 
| 
      
 984 
     | 
    
         
            +
            /* Returns the median of three elements. */
         
     | 
| 
      
 985 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 986 
     | 
    
         
            +
            int *
         
     | 
| 
      
 987 
     | 
    
         
            +
            tr_median3(const int *ISAd, int *v1, int *v2, int *v3) {
         
     | 
| 
      
 988 
     | 
    
         
            +
              int *t;
         
     | 
| 
      
 989 
     | 
    
         
            +
              if(ISAd[*v1] > ISAd[*v2]) { SWAP(v1, v2); }
         
     | 
| 
      
 990 
     | 
    
         
            +
              if(ISAd[*v2] > ISAd[*v3]) {
         
     | 
| 
      
 991 
     | 
    
         
            +
                if(ISAd[*v1] > ISAd[*v3]) { return v1; }
         
     | 
| 
      
 992 
     | 
    
         
            +
                else { return v3; }
         
     | 
| 
      
 993 
     | 
    
         
            +
              }
         
     | 
| 
      
 994 
     | 
    
         
            +
              return v2;
         
     | 
| 
      
 995 
     | 
    
         
            +
            }
         
     | 
| 
      
 996 
     | 
    
         
            +
             
     | 
| 
      
 997 
     | 
    
         
            +
            /* Returns the median of five elements. */
         
     | 
| 
      
 998 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 999 
     | 
    
         
            +
            int *
         
     | 
| 
      
 1000 
     | 
    
         
            +
            tr_median5(const int *ISAd,
         
     | 
| 
      
 1001 
     | 
    
         
            +
                       int *v1, int *v2, int *v3, int *v4, int *v5) {
         
     | 
| 
      
 1002 
     | 
    
         
            +
              int *t;
         
     | 
| 
      
 1003 
     | 
    
         
            +
              if(ISAd[*v2] > ISAd[*v3]) { SWAP(v2, v3); }
         
     | 
| 
      
 1004 
     | 
    
         
            +
              if(ISAd[*v4] > ISAd[*v5]) { SWAP(v4, v5); }
         
     | 
| 
      
 1005 
     | 
    
         
            +
              if(ISAd[*v2] > ISAd[*v4]) { SWAP(v2, v4); SWAP(v3, v5); }
         
     | 
| 
      
 1006 
     | 
    
         
            +
              if(ISAd[*v1] > ISAd[*v3]) { SWAP(v1, v3); }
         
     | 
| 
      
 1007 
     | 
    
         
            +
              if(ISAd[*v1] > ISAd[*v4]) { SWAP(v1, v4); SWAP(v3, v5); }
         
     | 
| 
      
 1008 
     | 
    
         
            +
              if(ISAd[*v3] > ISAd[*v4]) { return v4; }
         
     | 
| 
      
 1009 
     | 
    
         
            +
              return v3;
         
     | 
| 
      
 1010 
     | 
    
         
            +
            }
         
     | 
| 
      
 1011 
     | 
    
         
            +
             
     | 
| 
      
 1012 
     | 
    
         
            +
            /* Returns the pivot element. */
         
     | 
| 
      
 1013 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 1014 
     | 
    
         
            +
            int *
         
     | 
| 
      
 1015 
     | 
    
         
            +
            tr_pivot(const int *ISAd, int *first, int *last) {
         
     | 
| 
      
 1016 
     | 
    
         
            +
              int *middle;
         
     | 
| 
      
 1017 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 1018 
     | 
    
         
            +
             
     | 
| 
      
 1019 
     | 
    
         
            +
              t = last - first;
         
     | 
| 
      
 1020 
     | 
    
         
            +
              middle = first + t / 2;
         
     | 
| 
      
 1021 
     | 
    
         
            +
             
     | 
| 
      
 1022 
     | 
    
         
            +
              if(t <= 512) {
         
     | 
| 
      
 1023 
     | 
    
         
            +
                if(t <= 32) {
         
     | 
| 
      
 1024 
     | 
    
         
            +
                  return tr_median3(ISAd, first, middle, last - 1);
         
     | 
| 
      
 1025 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1026 
     | 
    
         
            +
                  t >>= 2;
         
     | 
| 
      
 1027 
     | 
    
         
            +
                  return tr_median5(ISAd, first, first + t, middle, last - 1 - t, last - 1);
         
     | 
| 
      
 1028 
     | 
    
         
            +
                }
         
     | 
| 
      
 1029 
     | 
    
         
            +
              }
         
     | 
| 
      
 1030 
     | 
    
         
            +
              t >>= 3;
         
     | 
| 
      
 1031 
     | 
    
         
            +
              first  = tr_median3(ISAd, first, first + t, first + (t << 1));
         
     | 
| 
      
 1032 
     | 
    
         
            +
              middle = tr_median3(ISAd, middle - t, middle, middle + t);
         
     | 
| 
      
 1033 
     | 
    
         
            +
              last   = tr_median3(ISAd, last - 1 - (t << 1), last - 1 - t, last - 1);
         
     | 
| 
      
 1034 
     | 
    
         
            +
              return tr_median3(ISAd, first, middle, last);
         
     | 
| 
      
 1035 
     | 
    
         
            +
            }
         
     | 
| 
      
 1036 
     | 
    
         
            +
             
     | 
| 
      
 1037 
     | 
    
         
            +
             
     | 
| 
      
 1038 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 1039 
     | 
    
         
            +
             
     | 
| 
      
 1040 
     | 
    
         
            +
            typedef struct _trbudget_t trbudget_t;
         
     | 
| 
      
 1041 
     | 
    
         
            +
            struct _trbudget_t {
         
     | 
| 
      
 1042 
     | 
    
         
            +
              int chance;
         
     | 
| 
      
 1043 
     | 
    
         
            +
              int remain;
         
     | 
| 
      
 1044 
     | 
    
         
            +
              int incval;
         
     | 
| 
      
 1045 
     | 
    
         
            +
              int count;
         
     | 
| 
      
 1046 
     | 
    
         
            +
            };
         
     | 
| 
      
 1047 
     | 
    
         
            +
             
     | 
| 
      
 1048 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 1049 
     | 
    
         
            +
            void
         
     | 
| 
      
 1050 
     | 
    
         
            +
            trbudget_init(trbudget_t *budget, int chance, int incval) {
         
     | 
| 
      
 1051 
     | 
    
         
            +
              budget->chance = chance;
         
     | 
| 
      
 1052 
     | 
    
         
            +
              budget->remain = budget->incval = incval;
         
     | 
| 
      
 1053 
     | 
    
         
            +
            }
         
     | 
| 
      
 1054 
     | 
    
         
            +
             
     | 
| 
      
 1055 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 1056 
     | 
    
         
            +
            int
         
     | 
| 
      
 1057 
     | 
    
         
            +
            trbudget_check(trbudget_t *budget, int size) {
         
     | 
| 
      
 1058 
     | 
    
         
            +
              if(size <= budget->remain) { budget->remain -= size; return 1; }
         
     | 
| 
      
 1059 
     | 
    
         
            +
              if(budget->chance == 0) { budget->count += size; return 0; }
         
     | 
| 
      
 1060 
     | 
    
         
            +
              budget->remain += budget->incval - size;
         
     | 
| 
      
 1061 
     | 
    
         
            +
              budget->chance -= 1;
         
     | 
| 
      
 1062 
     | 
    
         
            +
              return 1;
         
     | 
| 
      
 1063 
     | 
    
         
            +
            }
         
     | 
| 
      
 1064 
     | 
    
         
            +
             
     | 
| 
      
 1065 
     | 
    
         
            +
             
     | 
| 
      
 1066 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 1067 
     | 
    
         
            +
             
     | 
| 
      
 1068 
     | 
    
         
            +
            static INLINE
         
     | 
| 
      
 1069 
     | 
    
         
            +
            void
         
     | 
| 
      
 1070 
     | 
    
         
            +
            tr_partition(const int *ISAd,
         
     | 
| 
      
 1071 
     | 
    
         
            +
                         int *first, int *middle, int *last,
         
     | 
| 
      
 1072 
     | 
    
         
            +
                         int **pa, int **pb, int v) {
         
     | 
| 
      
 1073 
     | 
    
         
            +
              int *a, *b, *c, *d, *e, *f;
         
     | 
| 
      
 1074 
     | 
    
         
            +
              int t, s;
         
     | 
| 
      
 1075 
     | 
    
         
            +
              int x = 0;
         
     | 
| 
      
 1076 
     | 
    
         
            +
             
     | 
| 
      
 1077 
     | 
    
         
            +
              for(b = middle - 1; (++b < last) && ((x = ISAd[*b]) == v);) { }
         
     | 
| 
      
 1078 
     | 
    
         
            +
              if(((a = b) < last) && (x < v)) {
         
     | 
| 
      
 1079 
     | 
    
         
            +
                for(; (++b < last) && ((x = ISAd[*b]) <= v);) {
         
     | 
| 
      
 1080 
     | 
    
         
            +
                  if(x == v) { SWAP(*b, *a); ++a; }
         
     | 
| 
      
 1081 
     | 
    
         
            +
                }
         
     | 
| 
      
 1082 
     | 
    
         
            +
              }
         
     | 
| 
      
 1083 
     | 
    
         
            +
              for(c = last; (b < --c) && ((x = ISAd[*c]) == v);) { }
         
     | 
| 
      
 1084 
     | 
    
         
            +
              if((b < (d = c)) && (x > v)) {
         
     | 
| 
      
 1085 
     | 
    
         
            +
                for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
         
     | 
| 
      
 1086 
     | 
    
         
            +
                  if(x == v) { SWAP(*c, *d); --d; }
         
     | 
| 
      
 1087 
     | 
    
         
            +
                }
         
     | 
| 
      
 1088 
     | 
    
         
            +
              }
         
     | 
| 
      
 1089 
     | 
    
         
            +
              for(; b < c;) {
         
     | 
| 
      
 1090 
     | 
    
         
            +
                SWAP(*b, *c);
         
     | 
| 
      
 1091 
     | 
    
         
            +
                for(; (++b < c) && ((x = ISAd[*b]) <= v);) {
         
     | 
| 
      
 1092 
     | 
    
         
            +
                  if(x == v) { SWAP(*b, *a); ++a; }
         
     | 
| 
      
 1093 
     | 
    
         
            +
                }
         
     | 
| 
      
 1094 
     | 
    
         
            +
                for(; (b < --c) && ((x = ISAd[*c]) >= v);) {
         
     | 
| 
      
 1095 
     | 
    
         
            +
                  if(x == v) { SWAP(*c, *d); --d; }
         
     | 
| 
      
 1096 
     | 
    
         
            +
                }
         
     | 
| 
      
 1097 
     | 
    
         
            +
              }
         
     | 
| 
      
 1098 
     | 
    
         
            +
             
     | 
| 
      
 1099 
     | 
    
         
            +
              if(a <= d) {
         
     | 
| 
      
 1100 
     | 
    
         
            +
                c = b - 1;
         
     | 
| 
      
 1101 
     | 
    
         
            +
                if((s = a - first) > (t = b - a)) { s = t; }
         
     | 
| 
      
 1102 
     | 
    
         
            +
                for(e = first, f = b - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
         
     | 
| 
      
 1103 
     | 
    
         
            +
                if((s = d - c) > (t = last - d - 1)) { s = t; }
         
     | 
| 
      
 1104 
     | 
    
         
            +
                for(e = b, f = last - s; 0 < s; --s, ++e, ++f) { SWAP(*e, *f); }
         
     | 
| 
      
 1105 
     | 
    
         
            +
                first += (b - a), last -= (d - c);
         
     | 
| 
      
 1106 
     | 
    
         
            +
              }
         
     | 
| 
      
 1107 
     | 
    
         
            +
              *pa = first, *pb = last;
         
     | 
| 
      
 1108 
     | 
    
         
            +
            }
         
     | 
| 
      
 1109 
     | 
    
         
            +
             
     | 
| 
      
 1110 
     | 
    
         
            +
            static
         
     | 
| 
      
 1111 
     | 
    
         
            +
            void
         
     | 
| 
      
 1112 
     | 
    
         
            +
            tr_copy(int *ISA, const int *SA,
         
     | 
| 
      
 1113 
     | 
    
         
            +
                    int *first, int *a, int *b, int *last,
         
     | 
| 
      
 1114 
     | 
    
         
            +
                    int depth) {
         
     | 
| 
      
 1115 
     | 
    
         
            +
              /* sort suffixes of middle partition
         
     | 
| 
      
 1116 
     | 
    
         
            +
                 by using sorted order of suffixes of left and right partition. */
         
     | 
| 
      
 1117 
     | 
    
         
            +
              int *c, *d, *e;
         
     | 
| 
      
 1118 
     | 
    
         
            +
              int s, v;
         
     | 
| 
      
 1119 
     | 
    
         
            +
             
     | 
| 
      
 1120 
     | 
    
         
            +
              v = b - SA - 1;
         
     | 
| 
      
 1121 
     | 
    
         
            +
              for(c = first, d = a - 1; c <= d; ++c) {
         
     | 
| 
      
 1122 
     | 
    
         
            +
                if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
         
     | 
| 
      
 1123 
     | 
    
         
            +
                  *++d = s;
         
     | 
| 
      
 1124 
     | 
    
         
            +
                  ISA[s] = d - SA;
         
     | 
| 
      
 1125 
     | 
    
         
            +
                }
         
     | 
| 
      
 1126 
     | 
    
         
            +
              }
         
     | 
| 
      
 1127 
     | 
    
         
            +
              for(c = last - 1, e = d + 1, d = b; e < d; --c) {
         
     | 
| 
      
 1128 
     | 
    
         
            +
                if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
         
     | 
| 
      
 1129 
     | 
    
         
            +
                  *--d = s;
         
     | 
| 
      
 1130 
     | 
    
         
            +
                  ISA[s] = d - SA;
         
     | 
| 
      
 1131 
     | 
    
         
            +
                }
         
     | 
| 
      
 1132 
     | 
    
         
            +
              }
         
     | 
| 
      
 1133 
     | 
    
         
            +
            }
         
     | 
| 
      
 1134 
     | 
    
         
            +
             
     | 
| 
      
 1135 
     | 
    
         
            +
            static
         
     | 
| 
      
 1136 
     | 
    
         
            +
            void
         
     | 
| 
      
 1137 
     | 
    
         
            +
            tr_partialcopy(int *ISA, const int *SA,
         
     | 
| 
      
 1138 
     | 
    
         
            +
                           int *first, int *a, int *b, int *last,
         
     | 
| 
      
 1139 
     | 
    
         
            +
                           int depth) {
         
     | 
| 
      
 1140 
     | 
    
         
            +
              int *c, *d, *e;
         
     | 
| 
      
 1141 
     | 
    
         
            +
              int s, v;
         
     | 
| 
      
 1142 
     | 
    
         
            +
              int rank, lastrank, newrank = -1;
         
     | 
| 
      
 1143 
     | 
    
         
            +
             
     | 
| 
      
 1144 
     | 
    
         
            +
              v = b - SA - 1;
         
     | 
| 
      
 1145 
     | 
    
         
            +
              lastrank = -1;
         
     | 
| 
      
 1146 
     | 
    
         
            +
              for(c = first, d = a - 1; c <= d; ++c) {
         
     | 
| 
      
 1147 
     | 
    
         
            +
                if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
         
     | 
| 
      
 1148 
     | 
    
         
            +
                  *++d = s;
         
     | 
| 
      
 1149 
     | 
    
         
            +
                  rank = ISA[s + depth];
         
     | 
| 
      
 1150 
     | 
    
         
            +
                  if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
         
     | 
| 
      
 1151 
     | 
    
         
            +
                  ISA[s] = newrank;
         
     | 
| 
      
 1152 
     | 
    
         
            +
                }
         
     | 
| 
      
 1153 
     | 
    
         
            +
              }
         
     | 
| 
      
 1154 
     | 
    
         
            +
             
     | 
| 
      
 1155 
     | 
    
         
            +
              lastrank = -1;
         
     | 
| 
      
 1156 
     | 
    
         
            +
              for(e = d; first <= e; --e) {
         
     | 
| 
      
 1157 
     | 
    
         
            +
                rank = ISA[*e];
         
     | 
| 
      
 1158 
     | 
    
         
            +
                if(lastrank != rank) { lastrank = rank; newrank = e - SA; }
         
     | 
| 
      
 1159 
     | 
    
         
            +
                if(newrank != rank) { ISA[*e] = newrank; }
         
     | 
| 
      
 1160 
     | 
    
         
            +
              }
         
     | 
| 
      
 1161 
     | 
    
         
            +
             
     | 
| 
      
 1162 
     | 
    
         
            +
              lastrank = -1;
         
     | 
| 
      
 1163 
     | 
    
         
            +
              for(c = last - 1, e = d + 1, d = b; e < d; --c) {
         
     | 
| 
      
 1164 
     | 
    
         
            +
                if((0 <= (s = *c - depth)) && (ISA[s] == v)) {
         
     | 
| 
      
 1165 
     | 
    
         
            +
                  *--d = s;
         
     | 
| 
      
 1166 
     | 
    
         
            +
                  rank = ISA[s + depth];
         
     | 
| 
      
 1167 
     | 
    
         
            +
                  if(lastrank != rank) { lastrank = rank; newrank = d - SA; }
         
     | 
| 
      
 1168 
     | 
    
         
            +
                  ISA[s] = newrank;
         
     | 
| 
      
 1169 
     | 
    
         
            +
                }
         
     | 
| 
      
 1170 
     | 
    
         
            +
              }
         
     | 
| 
      
 1171 
     | 
    
         
            +
            }
         
     | 
| 
      
 1172 
     | 
    
         
            +
             
     | 
| 
      
 1173 
     | 
    
         
            +
            static
         
     | 
| 
      
 1174 
     | 
    
         
            +
            void
         
     | 
| 
      
 1175 
     | 
    
         
            +
            tr_introsort(int *ISA, const int *ISAd,
         
     | 
| 
      
 1176 
     | 
    
         
            +
                         int *SA, int *first, int *last,
         
     | 
| 
      
 1177 
     | 
    
         
            +
                         trbudget_t *budget) {
         
     | 
| 
      
 1178 
     | 
    
         
            +
            #define STACK_SIZE TR_STACKSIZE
         
     | 
| 
      
 1179 
     | 
    
         
            +
              struct { const int *a; int *b, *c; int d, e; }stack[STACK_SIZE];
         
     | 
| 
      
 1180 
     | 
    
         
            +
              int *a, *b, *c;
         
     | 
| 
      
 1181 
     | 
    
         
            +
              int t;
         
     | 
| 
      
 1182 
     | 
    
         
            +
              int v, x = 0;
         
     | 
| 
      
 1183 
     | 
    
         
            +
              int incr = ISAd - ISA;
         
     | 
| 
      
 1184 
     | 
    
         
            +
              int limit, next;
         
     | 
| 
      
 1185 
     | 
    
         
            +
              int ssize, trlink = -1;
         
     | 
| 
      
 1186 
     | 
    
         
            +
             
     | 
| 
      
 1187 
     | 
    
         
            +
              for(ssize = 0, limit = tr_ilg(last - first);;) {
         
     | 
| 
      
 1188 
     | 
    
         
            +
             
     | 
| 
      
 1189 
     | 
    
         
            +
                if(limit < 0) {
         
     | 
| 
      
 1190 
     | 
    
         
            +
                  if(limit == -1) {
         
     | 
| 
      
 1191 
     | 
    
         
            +
                    /* tandem repeat partition */
         
     | 
| 
      
 1192 
     | 
    
         
            +
                    tr_partition(ISAd - incr, first, first, last, &a, &b, last - SA - 1);
         
     | 
| 
      
 1193 
     | 
    
         
            +
             
     | 
| 
      
 1194 
     | 
    
         
            +
                    /* update ranks */
         
     | 
| 
      
 1195 
     | 
    
         
            +
                    if(a < last) {
         
     | 
| 
      
 1196 
     | 
    
         
            +
                      for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
         
     | 
| 
      
 1197 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1198 
     | 
    
         
            +
                    if(b < last) {
         
     | 
| 
      
 1199 
     | 
    
         
            +
                      for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; }
         
     | 
| 
      
 1200 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1201 
     | 
    
         
            +
             
     | 
| 
      
 1202 
     | 
    
         
            +
                    /* push */
         
     | 
| 
      
 1203 
     | 
    
         
            +
                    if(1 < (b - a)) {
         
     | 
| 
      
 1204 
     | 
    
         
            +
                      STACK_PUSH5(NULL, a, b, 0, 0);
         
     | 
| 
      
 1205 
     | 
    
         
            +
                      STACK_PUSH5(ISAd - incr, first, last, -2, trlink);
         
     | 
| 
      
 1206 
     | 
    
         
            +
                      trlink = ssize - 2;
         
     | 
| 
      
 1207 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1208 
     | 
    
         
            +
                    if((a - first) <= (last - b)) {
         
     | 
| 
      
 1209 
     | 
    
         
            +
                      if(1 < (a - first)) {
         
     | 
| 
      
 1210 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, b, last, tr_ilg(last - b), trlink);
         
     | 
| 
      
 1211 
     | 
    
         
            +
                        last = a, limit = tr_ilg(a - first);
         
     | 
| 
      
 1212 
     | 
    
         
            +
                      } else if(1 < (last - b)) {
         
     | 
| 
      
 1213 
     | 
    
         
            +
                        first = b, limit = tr_ilg(last - b);
         
     | 
| 
      
 1214 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1215 
     | 
    
         
            +
                        STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1216 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1217 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1218 
     | 
    
         
            +
                      if(1 < (last - b)) {
         
     | 
| 
      
 1219 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, first, a, tr_ilg(a - first), trlink);
         
     | 
| 
      
 1220 
     | 
    
         
            +
                        first = b, limit = tr_ilg(last - b);
         
     | 
| 
      
 1221 
     | 
    
         
            +
                      } else if(1 < (a - first)) {
         
     | 
| 
      
 1222 
     | 
    
         
            +
                        last = a, limit = tr_ilg(a - first);
         
     | 
| 
      
 1223 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1224 
     | 
    
         
            +
                        STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1225 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1226 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1227 
     | 
    
         
            +
                  } else if(limit == -2) {
         
     | 
| 
      
 1228 
     | 
    
         
            +
                    /* tandem repeat copy */
         
     | 
| 
      
 1229 
     | 
    
         
            +
                    a = stack[--ssize].b, b = stack[ssize].c;
         
     | 
| 
      
 1230 
     | 
    
         
            +
                    if(stack[ssize].d == 0) {
         
     | 
| 
      
 1231 
     | 
    
         
            +
                      tr_copy(ISA, SA, first, a, b, last, ISAd - ISA);
         
     | 
| 
      
 1232 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1233 
     | 
    
         
            +
                      if(0 <= trlink) { stack[trlink].d = -1; }
         
     | 
| 
      
 1234 
     | 
    
         
            +
                      tr_partialcopy(ISA, SA, first, a, b, last, ISAd - ISA);
         
     | 
| 
      
 1235 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1236 
     | 
    
         
            +
                    STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1237 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 1238 
     | 
    
         
            +
                    /* sorted partition */
         
     | 
| 
      
 1239 
     | 
    
         
            +
                    if(0 <= *first) {
         
     | 
| 
      
 1240 
     | 
    
         
            +
                      a = first;
         
     | 
| 
      
 1241 
     | 
    
         
            +
                      do { ISA[*a] = a - SA; } while((++a < last) && (0 <= *a));
         
     | 
| 
      
 1242 
     | 
    
         
            +
                      first = a;
         
     | 
| 
      
 1243 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1244 
     | 
    
         
            +
                    if(first < last) {
         
     | 
| 
      
 1245 
     | 
    
         
            +
                      a = first; do { *a = ~*a; } while(*++a < 0);
         
     | 
| 
      
 1246 
     | 
    
         
            +
                      next = (ISA[*a] != ISAd[*a]) ? tr_ilg(a - first + 1) : -1;
         
     | 
| 
      
 1247 
     | 
    
         
            +
                      if(++a < last) { for(b = first, v = a - SA - 1; b < a; ++b) { ISA[*b] = v; } }
         
     | 
| 
      
 1248 
     | 
    
         
            +
             
     | 
| 
      
 1249 
     | 
    
         
            +
                      /* push */
         
     | 
| 
      
 1250 
     | 
    
         
            +
                      if(trbudget_check(budget, a - first)) {
         
     | 
| 
      
 1251 
     | 
    
         
            +
                        if((a - first) <= (last - a)) {
         
     | 
| 
      
 1252 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, a, last, -3, trlink);
         
     | 
| 
      
 1253 
     | 
    
         
            +
                          ISAd += incr, last = a, limit = next;
         
     | 
| 
      
 1254 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1255 
     | 
    
         
            +
                          if(1 < (last - a)) {
         
     | 
| 
      
 1256 
     | 
    
         
            +
                            STACK_PUSH5(ISAd + incr, first, a, next, trlink);
         
     | 
| 
      
 1257 
     | 
    
         
            +
                            first = a, limit = -3;
         
     | 
| 
      
 1258 
     | 
    
         
            +
                          } else {
         
     | 
| 
      
 1259 
     | 
    
         
            +
                            ISAd += incr, last = a, limit = next;
         
     | 
| 
      
 1260 
     | 
    
         
            +
                          }
         
     | 
| 
      
 1261 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1262 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1263 
     | 
    
         
            +
                        if(0 <= trlink) { stack[trlink].d = -1; }
         
     | 
| 
      
 1264 
     | 
    
         
            +
                        if(1 < (last - a)) {
         
     | 
| 
      
 1265 
     | 
    
         
            +
                          first = a, limit = -3;
         
     | 
| 
      
 1266 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1267 
     | 
    
         
            +
                          STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1268 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1269 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1270 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1271 
     | 
    
         
            +
                      STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1272 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1273 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1274 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 1275 
     | 
    
         
            +
                }
         
     | 
| 
      
 1276 
     | 
    
         
            +
             
     | 
| 
      
 1277 
     | 
    
         
            +
                if((last - first) <= TR_INSERTIONSORT_THRESHOLD) {
         
     | 
| 
      
 1278 
     | 
    
         
            +
                  tr_insertionsort(ISAd, first, last);
         
     | 
| 
      
 1279 
     | 
    
         
            +
                  limit = -3;
         
     | 
| 
      
 1280 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 1281 
     | 
    
         
            +
                }
         
     | 
| 
      
 1282 
     | 
    
         
            +
             
     | 
| 
      
 1283 
     | 
    
         
            +
                if(limit-- == 0) {
         
     | 
| 
      
 1284 
     | 
    
         
            +
                  tr_heapsort(ISAd, first, last - first);
         
     | 
| 
      
 1285 
     | 
    
         
            +
                  for(a = last - 1; first < a; a = b) {
         
     | 
| 
      
 1286 
     | 
    
         
            +
                    for(x = ISAd[*a], b = a - 1; (first <= b) && (ISAd[*b] == x); --b) { *b = ~*b; }
         
     | 
| 
      
 1287 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1288 
     | 
    
         
            +
                  limit = -3;
         
     | 
| 
      
 1289 
     | 
    
         
            +
                  continue;
         
     | 
| 
      
 1290 
     | 
    
         
            +
                }
         
     | 
| 
      
 1291 
     | 
    
         
            +
             
     | 
| 
      
 1292 
     | 
    
         
            +
                /* choose pivot */
         
     | 
| 
      
 1293 
     | 
    
         
            +
                a = tr_pivot(ISAd, first, last);
         
     | 
| 
      
 1294 
     | 
    
         
            +
                SWAP(*first, *a);
         
     | 
| 
      
 1295 
     | 
    
         
            +
                v = ISAd[*first];
         
     | 
| 
      
 1296 
     | 
    
         
            +
             
     | 
| 
      
 1297 
     | 
    
         
            +
                /* partition */
         
     | 
| 
      
 1298 
     | 
    
         
            +
                tr_partition(ISAd, first, first + 1, last, &a, &b, v);
         
     | 
| 
      
 1299 
     | 
    
         
            +
                if((last - first) != (b - a)) {
         
     | 
| 
      
 1300 
     | 
    
         
            +
                  next = (ISA[*a] != v) ? tr_ilg(b - a) : -1;
         
     | 
| 
      
 1301 
     | 
    
         
            +
             
     | 
| 
      
 1302 
     | 
    
         
            +
                  /* update ranks */
         
     | 
| 
      
 1303 
     | 
    
         
            +
                  for(c = first, v = a - SA - 1; c < a; ++c) { ISA[*c] = v; }
         
     | 
| 
      
 1304 
     | 
    
         
            +
                  if(b < last) { for(c = a, v = b - SA - 1; c < b; ++c) { ISA[*c] = v; } }
         
     | 
| 
      
 1305 
     | 
    
         
            +
             
     | 
| 
      
 1306 
     | 
    
         
            +
                  /* push */
         
     | 
| 
      
 1307 
     | 
    
         
            +
                  if((1 < (b - a)) && (trbudget_check(budget, b - a))) {
         
     | 
| 
      
 1308 
     | 
    
         
            +
                    if((a - first) <= (last - b)) {
         
     | 
| 
      
 1309 
     | 
    
         
            +
                      if((last - b) <= (b - a)) {
         
     | 
| 
      
 1310 
     | 
    
         
            +
                        if(1 < (a - first)) {
         
     | 
| 
      
 1311 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1312 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1313 
     | 
    
         
            +
                          last = a;
         
     | 
| 
      
 1314 
     | 
    
         
            +
                        } else if(1 < (last - b)) {
         
     | 
| 
      
 1315 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1316 
     | 
    
         
            +
                          first = b;
         
     | 
| 
      
 1317 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1318 
     | 
    
         
            +
                          ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1319 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1320 
     | 
    
         
            +
                      } else if((a - first) <= (b - a)) {
         
     | 
| 
      
 1321 
     | 
    
         
            +
                        if(1 < (a - first)) {
         
     | 
| 
      
 1322 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1323 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1324 
     | 
    
         
            +
                          last = a;
         
     | 
| 
      
 1325 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1326 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1327 
     | 
    
         
            +
                          ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1328 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1329 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1330 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1331 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1332 
     | 
    
         
            +
                        ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1333 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1334 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1335 
     | 
    
         
            +
                      if((a - first) <= (b - a)) {
         
     | 
| 
      
 1336 
     | 
    
         
            +
                        if(1 < (last - b)) {
         
     | 
| 
      
 1337 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1338 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1339 
     | 
    
         
            +
                          first = b;
         
     | 
| 
      
 1340 
     | 
    
         
            +
                        } else if(1 < (a - first)) {
         
     | 
| 
      
 1341 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1342 
     | 
    
         
            +
                          last = a;
         
     | 
| 
      
 1343 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1344 
     | 
    
         
            +
                          ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1345 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1346 
     | 
    
         
            +
                      } else if((last - b) <= (b - a)) {
         
     | 
| 
      
 1347 
     | 
    
         
            +
                        if(1 < (last - b)) {
         
     | 
| 
      
 1348 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1349 
     | 
    
         
            +
                          STACK_PUSH5(ISAd + incr, a, b, next, trlink);
         
     | 
| 
      
 1350 
     | 
    
         
            +
                          first = b;
         
     | 
| 
      
 1351 
     | 
    
         
            +
                        } else {
         
     | 
| 
      
 1352 
     | 
    
         
            +
                          STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1353 
     | 
    
         
            +
                          ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1354 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1355 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1356 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1357 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1358 
     | 
    
         
            +
                        ISAd += incr, first = a, last = b, limit = next;
         
     | 
| 
      
 1359 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1360 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1361 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 1362 
     | 
    
         
            +
                    if((1 < (b - a)) && (0 <= trlink)) { stack[trlink].d = -1; }
         
     | 
| 
      
 1363 
     | 
    
         
            +
                    if((a - first) <= (last - b)) {
         
     | 
| 
      
 1364 
     | 
    
         
            +
                      if(1 < (a - first)) {
         
     | 
| 
      
 1365 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, b, last, limit, trlink);
         
     | 
| 
      
 1366 
     | 
    
         
            +
                        last = a;
         
     | 
| 
      
 1367 
     | 
    
         
            +
                      } else if(1 < (last - b)) {
         
     | 
| 
      
 1368 
     | 
    
         
            +
                        first = b;
         
     | 
| 
      
 1369 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1370 
     | 
    
         
            +
                        STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1371 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1372 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1373 
     | 
    
         
            +
                      if(1 < (last - b)) {
         
     | 
| 
      
 1374 
     | 
    
         
            +
                        STACK_PUSH5(ISAd, first, a, limit, trlink);
         
     | 
| 
      
 1375 
     | 
    
         
            +
                        first = b;
         
     | 
| 
      
 1376 
     | 
    
         
            +
                      } else if(1 < (a - first)) {
         
     | 
| 
      
 1377 
     | 
    
         
            +
                        last = a;
         
     | 
| 
      
 1378 
     | 
    
         
            +
                      } else {
         
     | 
| 
      
 1379 
     | 
    
         
            +
                        STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1380 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1381 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1382 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1383 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1384 
     | 
    
         
            +
                  if(trbudget_check(budget, last - first)) {
         
     | 
| 
      
 1385 
     | 
    
         
            +
                    limit = tr_ilg(last - first), ISAd += incr;
         
     | 
| 
      
 1386 
     | 
    
         
            +
                  } else {
         
     | 
| 
      
 1387 
     | 
    
         
            +
                    if(0 <= trlink) { stack[trlink].d = -1; }
         
     | 
| 
      
 1388 
     | 
    
         
            +
                    STACK_POP5(ISAd, first, last, limit, trlink);
         
     | 
| 
      
 1389 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1390 
     | 
    
         
            +
                }
         
     | 
| 
      
 1391 
     | 
    
         
            +
              }
         
     | 
| 
      
 1392 
     | 
    
         
            +
            #undef STACK_SIZE
         
     | 
| 
      
 1393 
     | 
    
         
            +
            }
         
     | 
| 
      
 1394 
     | 
    
         
            +
             
     | 
| 
      
 1395 
     | 
    
         
            +
             
     | 
| 
      
 1396 
     | 
    
         
            +
             
     | 
| 
      
 1397 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 1398 
     | 
    
         
            +
             
     | 
| 
      
 1399 
     | 
    
         
            +
            /* Tandem repeat sort */
         
     | 
| 
      
 1400 
     | 
    
         
            +
            static
         
     | 
| 
      
 1401 
     | 
    
         
            +
            void
         
     | 
| 
      
 1402 
     | 
    
         
            +
            trsort(int *ISA, int *SA, int n, int depth) {
         
     | 
| 
      
 1403 
     | 
    
         
            +
              int *ISAd;
         
     | 
| 
      
 1404 
     | 
    
         
            +
              int *first, *last;
         
     | 
| 
      
 1405 
     | 
    
         
            +
              trbudget_t budget;
         
     | 
| 
      
 1406 
     | 
    
         
            +
              int t, skip, unsorted;
         
     | 
| 
      
 1407 
     | 
    
         
            +
             
     | 
| 
      
 1408 
     | 
    
         
            +
              trbudget_init(&budget, tr_ilg(n) * 2 / 3, n);
         
     | 
| 
      
 1409 
     | 
    
         
            +
            /*  trbudget_init(&budget, tr_ilg(n) * 3 / 4, n); */
         
     | 
| 
      
 1410 
     | 
    
         
            +
              for(ISAd = ISA + depth; -n < *SA; ISAd += ISAd - ISA) {
         
     | 
| 
      
 1411 
     | 
    
         
            +
                first = SA;
         
     | 
| 
      
 1412 
     | 
    
         
            +
                skip = 0;
         
     | 
| 
      
 1413 
     | 
    
         
            +
                unsorted = 0;
         
     | 
| 
      
 1414 
     | 
    
         
            +
                do {
         
     | 
| 
      
 1415 
     | 
    
         
            +
                  if((t = *first) < 0) { first -= t; skip += t; }
         
     | 
| 
      
 1416 
     | 
    
         
            +
                  else {
         
     | 
| 
      
 1417 
     | 
    
         
            +
                    if(skip != 0) { *(first + skip) = skip; skip = 0; }
         
     | 
| 
      
 1418 
     | 
    
         
            +
                    last = SA + ISA[t] + 1;
         
     | 
| 
      
 1419 
     | 
    
         
            +
                    if(1 < (last - first)) {
         
     | 
| 
      
 1420 
     | 
    
         
            +
                      budget.count = 0;
         
     | 
| 
      
 1421 
     | 
    
         
            +
                      tr_introsort(ISA, ISAd, SA, first, last, &budget);
         
     | 
| 
      
 1422 
     | 
    
         
            +
                      if(budget.count != 0) { unsorted += budget.count; }
         
     | 
| 
      
 1423 
     | 
    
         
            +
                      else { skip = first - last; }
         
     | 
| 
      
 1424 
     | 
    
         
            +
                    } else if((last - first) == 1) {
         
     | 
| 
      
 1425 
     | 
    
         
            +
                      skip = -1;
         
     | 
| 
      
 1426 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1427 
     | 
    
         
            +
                    first = last;
         
     | 
| 
      
 1428 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1429 
     | 
    
         
            +
                } while(first < (SA + n));
         
     | 
| 
      
 1430 
     | 
    
         
            +
                if(skip != 0) { *(first + skip) = skip; }
         
     | 
| 
      
 1431 
     | 
    
         
            +
                if(unsorted == 0) { break; }
         
     | 
| 
      
 1432 
     | 
    
         
            +
              }
         
     | 
| 
      
 1433 
     | 
    
         
            +
            }
         
     | 
| 
      
 1434 
     | 
    
         
            +
             
     | 
| 
      
 1435 
     | 
    
         
            +
             
     | 
| 
      
 1436 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 1437 
     | 
    
         
            +
             
     | 
| 
      
 1438 
     | 
    
         
            +
            /* Sorts suffixes of type B*. */
         
     | 
| 
      
 1439 
     | 
    
         
            +
            static
         
     | 
| 
      
 1440 
     | 
    
         
            +
            int
         
     | 
| 
      
 1441 
     | 
    
         
            +
            sort_typeBstar(const unsigned char *T, int *SA,
         
     | 
| 
      
 1442 
     | 
    
         
            +
                           int *bucket_A, int *bucket_B,
         
     | 
| 
      
 1443 
     | 
    
         
            +
                           int n, int openMP) {
         
     | 
| 
      
 1444 
     | 
    
         
            +
              int *PAb, *ISAb, *buf;
         
     | 
| 
      
 1445 
     | 
    
         
            +
            #ifdef LIBBSC_OPENMP
         
     | 
| 
      
 1446 
     | 
    
         
            +
              int *curbuf;
         
     | 
| 
      
 1447 
     | 
    
         
            +
              int l;
         
     | 
| 
      
 1448 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 1449 
     | 
    
         
            +
              int i, j, k, t, m, bufsize;
         
     | 
| 
      
 1450 
     | 
    
         
            +
              int c0, c1;
         
     | 
| 
      
 1451 
     | 
    
         
            +
            #ifdef LIBBSC_OPENMP
         
     | 
| 
      
 1452 
     | 
    
         
            +
              int d0, d1;
         
     | 
| 
      
 1453 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 1454 
     | 
    
         
            +
              (void)openMP;
         
     | 
| 
      
 1455 
     | 
    
         
            +
             
     | 
| 
      
 1456 
     | 
    
         
            +
              /* Initialize bucket arrays. */
         
     | 
| 
      
 1457 
     | 
    
         
            +
              for(i = 0; i < BUCKET_A_SIZE; ++i) { bucket_A[i] = 0; }
         
     | 
| 
      
 1458 
     | 
    
         
            +
              for(i = 0; i < BUCKET_B_SIZE; ++i) { bucket_B[i] = 0; }
         
     | 
| 
      
 1459 
     | 
    
         
            +
             
     | 
| 
      
 1460 
     | 
    
         
            +
              /* Count the number of occurrences of the first one or two characters of each
         
     | 
| 
      
 1461 
     | 
    
         
            +
                 type A, B and B* suffix. Moreover, store the beginning position of all
         
     | 
| 
      
 1462 
     | 
    
         
            +
                 type B* suffixes into the array SA. */
         
     | 
| 
      
 1463 
     | 
    
         
            +
              for(i = n - 1, m = n, c0 = T[n - 1]; 0 <= i;) {
         
     | 
| 
      
 1464 
     | 
    
         
            +
                /* type A suffix. */
         
     | 
| 
      
 1465 
     | 
    
         
            +
                do { ++BUCKET_A(c1 = c0); } while((0 <= --i) && ((c0 = T[i]) >= c1));
         
     | 
| 
      
 1466 
     | 
    
         
            +
                if(0 <= i) {
         
     | 
| 
      
 1467 
     | 
    
         
            +
                  /* type B* suffix. */
         
     | 
| 
      
 1468 
     | 
    
         
            +
                  ++BUCKET_BSTAR(c0, c1);
         
     | 
| 
      
 1469 
     | 
    
         
            +
                  SA[--m] = i;
         
     | 
| 
      
 1470 
     | 
    
         
            +
                  /* type B suffix. */
         
     | 
| 
      
 1471 
     | 
    
         
            +
                  for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) {
         
     | 
| 
      
 1472 
     | 
    
         
            +
                    ++BUCKET_B(c0, c1);
         
     | 
| 
      
 1473 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1474 
     | 
    
         
            +
                }
         
     | 
| 
      
 1475 
     | 
    
         
            +
              }
         
     | 
| 
      
 1476 
     | 
    
         
            +
              m = n - m;
         
     | 
| 
      
 1477 
     | 
    
         
            +
            /*
         
     | 
| 
      
 1478 
     | 
    
         
            +
            note:
         
     | 
| 
      
 1479 
     | 
    
         
            +
              A type B* suffix is lexicographically smaller than a type B suffix that
         
     | 
| 
      
 1480 
     | 
    
         
            +
              begins with the same first two characters.
         
     | 
| 
      
 1481 
     | 
    
         
            +
            */
         
     | 
| 
      
 1482 
     | 
    
         
            +
             
     | 
| 
      
 1483 
     | 
    
         
            +
              /* Calculate the index of start/end point of each bucket. */
         
     | 
| 
      
 1484 
     | 
    
         
            +
              for(c0 = 0, i = 0, j = 0; c0 < ALPHABET_SIZE; ++c0) {
         
     | 
| 
      
 1485 
     | 
    
         
            +
                t = i + BUCKET_A(c0);
         
     | 
| 
      
 1486 
     | 
    
         
            +
                BUCKET_A(c0) = i + j; /* start point */
         
     | 
| 
      
 1487 
     | 
    
         
            +
                i = t + BUCKET_B(c0, c0);
         
     | 
| 
      
 1488 
     | 
    
         
            +
                for(c1 = c0 + 1; c1 < ALPHABET_SIZE; ++c1) {
         
     | 
| 
      
 1489 
     | 
    
         
            +
                  j += BUCKET_BSTAR(c0, c1);
         
     | 
| 
      
 1490 
     | 
    
         
            +
                  BUCKET_BSTAR(c0, c1) = j; /* end point */
         
     | 
| 
      
 1491 
     | 
    
         
            +
                  i += BUCKET_B(c0, c1);
         
     | 
| 
      
 1492 
     | 
    
         
            +
                }
         
     | 
| 
      
 1493 
     | 
    
         
            +
              }
         
     | 
| 
      
 1494 
     | 
    
         
            +
             
     | 
| 
      
 1495 
     | 
    
         
            +
              if(0 < m) {
         
     | 
| 
      
 1496 
     | 
    
         
            +
                /* Sort the type B* suffixes by their first two characters. */
         
     | 
| 
      
 1497 
     | 
    
         
            +
                PAb = SA + n - m; ISAb = SA + m;
         
     | 
| 
      
 1498 
     | 
    
         
            +
                for(i = m - 2; 0 <= i; --i) {
         
     | 
| 
      
 1499 
     | 
    
         
            +
                  t = PAb[i], c0 = T[t], c1 = T[t + 1];
         
     | 
| 
      
 1500 
     | 
    
         
            +
                  SA[--BUCKET_BSTAR(c0, c1)] = i;
         
     | 
| 
      
 1501 
     | 
    
         
            +
                }
         
     | 
| 
      
 1502 
     | 
    
         
            +
                t = PAb[m - 1], c0 = T[t], c1 = T[t + 1];
         
     | 
| 
      
 1503 
     | 
    
         
            +
                SA[--BUCKET_BSTAR(c0, c1)] = m - 1;
         
     | 
| 
      
 1504 
     | 
    
         
            +
             
     | 
| 
      
 1505 
     | 
    
         
            +
                /* Sort the type B* substrings using sssort. */
         
     | 
| 
      
 1506 
     | 
    
         
            +
            #ifdef LIBBSC_OPENMP
         
     | 
| 
      
 1507 
     | 
    
         
            +
                if (openMP)
         
     | 
| 
      
 1508 
     | 
    
         
            +
                {
         
     | 
| 
      
 1509 
     | 
    
         
            +
                    buf = SA + m;
         
     | 
| 
      
 1510 
     | 
    
         
            +
                    c0 = ALPHABET_SIZE - 2, c1 = ALPHABET_SIZE - 1, j = m;
         
     | 
| 
      
 1511 
     | 
    
         
            +
            #pragma omp parallel default(shared) private(bufsize, curbuf, k, l, d0, d1)
         
     | 
| 
      
 1512 
     | 
    
         
            +
                    {
         
     | 
| 
      
 1513 
     | 
    
         
            +
                      bufsize = (n - (2 * m)) / omp_get_num_threads();
         
     | 
| 
      
 1514 
     | 
    
         
            +
                      curbuf = buf + omp_get_thread_num() * bufsize;
         
     | 
| 
      
 1515 
     | 
    
         
            +
                      k = 0;
         
     | 
| 
      
 1516 
     | 
    
         
            +
                      for(;;) {
         
     | 
| 
      
 1517 
     | 
    
         
            +
                        #pragma omp critical(sssort_lock)
         
     | 
| 
      
 1518 
     | 
    
         
            +
                        {
         
     | 
| 
      
 1519 
     | 
    
         
            +
                          if(0 < (l = j)) {
         
     | 
| 
      
 1520 
     | 
    
         
            +
                            d0 = c0, d1 = c1;
         
     | 
| 
      
 1521 
     | 
    
         
            +
                            do {
         
     | 
| 
      
 1522 
     | 
    
         
            +
                              k = BUCKET_BSTAR(d0, d1);
         
     | 
| 
      
 1523 
     | 
    
         
            +
                              if(--d1 <= d0) {
         
     | 
| 
      
 1524 
     | 
    
         
            +
                                d1 = ALPHABET_SIZE - 1;
         
     | 
| 
      
 1525 
     | 
    
         
            +
                                if(--d0 < 0) { break; }
         
     | 
| 
      
 1526 
     | 
    
         
            +
                              }
         
     | 
| 
      
 1527 
     | 
    
         
            +
                            } while(((l - k) <= 1) && (0 < (l = k)));
         
     | 
| 
      
 1528 
     | 
    
         
            +
                            c0 = d0, c1 = d1, j = k;
         
     | 
| 
      
 1529 
     | 
    
         
            +
                          }
         
     | 
| 
      
 1530 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1531 
     | 
    
         
            +
                        if(l == 0) { break; }
         
     | 
| 
      
 1532 
     | 
    
         
            +
                        sssort(T, PAb, SA + k, SA + l,
         
     | 
| 
      
 1533 
     | 
    
         
            +
                               curbuf, bufsize, 2, n, *(SA + k) == (m - 1));
         
     | 
| 
      
 1534 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1535 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1536 
     | 
    
         
            +
                }
         
     | 
| 
      
 1537 
     | 
    
         
            +
                else
         
     | 
| 
      
 1538 
     | 
    
         
            +
                {
         
     | 
| 
      
 1539 
     | 
    
         
            +
                    buf = SA + m, bufsize = n - (2 * m);
         
     | 
| 
      
 1540 
     | 
    
         
            +
                    for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
         
     | 
| 
      
 1541 
     | 
    
         
            +
                      for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
         
     | 
| 
      
 1542 
     | 
    
         
            +
                        i = BUCKET_BSTAR(c0, c1);
         
     | 
| 
      
 1543 
     | 
    
         
            +
                        if(1 < (j - i)) {
         
     | 
| 
      
 1544 
     | 
    
         
            +
                          sssort(T, PAb, SA + i, SA + j,
         
     | 
| 
      
 1545 
     | 
    
         
            +
                                 buf, bufsize, 2, n, *(SA + i) == (m - 1));
         
     | 
| 
      
 1546 
     | 
    
         
            +
                        }
         
     | 
| 
      
 1547 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1548 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1549 
     | 
    
         
            +
                }
         
     | 
| 
      
 1550 
     | 
    
         
            +
            #else
         
     | 
| 
      
 1551 
     | 
    
         
            +
                buf = SA + m, bufsize = n - (2 * m);
         
     | 
| 
      
 1552 
     | 
    
         
            +
                for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
         
     | 
| 
      
 1553 
     | 
    
         
            +
                  for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
         
     | 
| 
      
 1554 
     | 
    
         
            +
                    i = BUCKET_BSTAR(c0, c1);
         
     | 
| 
      
 1555 
     | 
    
         
            +
                    if(1 < (j - i)) {
         
     | 
| 
      
 1556 
     | 
    
         
            +
                      sssort(T, PAb, SA + i, SA + j,
         
     | 
| 
      
 1557 
     | 
    
         
            +
                             buf, bufsize, 2, n, *(SA + i) == (m - 1));
         
     | 
| 
      
 1558 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1559 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1560 
     | 
    
         
            +
                }
         
     | 
| 
      
 1561 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 1562 
     | 
    
         
            +
             
     | 
| 
      
 1563 
     | 
    
         
            +
                /* Compute ranks of type B* substrings. */
         
     | 
| 
      
 1564 
     | 
    
         
            +
                for(i = m - 1; 0 <= i; --i) {
         
     | 
| 
      
 1565 
     | 
    
         
            +
                  if(0 <= SA[i]) {
         
     | 
| 
      
 1566 
     | 
    
         
            +
                    j = i;
         
     | 
| 
      
 1567 
     | 
    
         
            +
                    do { ISAb[SA[i]] = i; } while((0 <= --i) && (0 <= SA[i]));
         
     | 
| 
      
 1568 
     | 
    
         
            +
                    SA[i + 1] = i - j;
         
     | 
| 
      
 1569 
     | 
    
         
            +
                    if(i <= 0) { break; }
         
     | 
| 
      
 1570 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1571 
     | 
    
         
            +
                  j = i;
         
     | 
| 
      
 1572 
     | 
    
         
            +
                  do { ISAb[SA[i] = ~SA[i]] = j; } while(SA[--i] < 0);
         
     | 
| 
      
 1573 
     | 
    
         
            +
                  ISAb[SA[i]] = j;
         
     | 
| 
      
 1574 
     | 
    
         
            +
                }
         
     | 
| 
      
 1575 
     | 
    
         
            +
             
     | 
| 
      
 1576 
     | 
    
         
            +
                /* Construct the inverse suffix array of type B* suffixes using trsort. */
         
     | 
| 
      
 1577 
     | 
    
         
            +
                trsort(ISAb, SA, m, 1);
         
     | 
| 
      
 1578 
     | 
    
         
            +
             
     | 
| 
      
 1579 
     | 
    
         
            +
                /* Set the sorted order of tyoe B* suffixes. */
         
     | 
| 
      
 1580 
     | 
    
         
            +
                for(i = n - 1, j = m, c0 = T[n - 1]; 0 <= i;) {
         
     | 
| 
      
 1581 
     | 
    
         
            +
                  for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) >= c1); --i, c1 = c0) { }
         
     | 
| 
      
 1582 
     | 
    
         
            +
                  if(0 <= i) {
         
     | 
| 
      
 1583 
     | 
    
         
            +
                    t = i;
         
     | 
| 
      
 1584 
     | 
    
         
            +
                    for(--i, c1 = c0; (0 <= i) && ((c0 = T[i]) <= c1); --i, c1 = c0) { }
         
     | 
| 
      
 1585 
     | 
    
         
            +
                    SA[ISAb[--j]] = ((t == 0) || (1 < (t - i))) ? t : ~t;
         
     | 
| 
      
 1586 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1587 
     | 
    
         
            +
                }
         
     | 
| 
      
 1588 
     | 
    
         
            +
             
     | 
| 
      
 1589 
     | 
    
         
            +
                /* Calculate the index of start/end point of each bucket. */
         
     | 
| 
      
 1590 
     | 
    
         
            +
                BUCKET_B(ALPHABET_SIZE - 1, ALPHABET_SIZE - 1) = n; /* end point */
         
     | 
| 
      
 1591 
     | 
    
         
            +
                for(c0 = ALPHABET_SIZE - 2, k = m - 1; 0 <= c0; --c0) {
         
     | 
| 
      
 1592 
     | 
    
         
            +
                  i = BUCKET_A(c0 + 1) - 1;
         
     | 
| 
      
 1593 
     | 
    
         
            +
                  for(c1 = ALPHABET_SIZE - 1; c0 < c1; --c1) {
         
     | 
| 
      
 1594 
     | 
    
         
            +
                    t = i - BUCKET_B(c0, c1);
         
     | 
| 
      
 1595 
     | 
    
         
            +
                    BUCKET_B(c0, c1) = i; /* end point */
         
     | 
| 
      
 1596 
     | 
    
         
            +
             
     | 
| 
      
 1597 
     | 
    
         
            +
                    /* Move all type B* suffixes to the correct position. */
         
     | 
| 
      
 1598 
     | 
    
         
            +
                    for(i = t, j = BUCKET_BSTAR(c0, c1);
         
     | 
| 
      
 1599 
     | 
    
         
            +
                        j <= k;
         
     | 
| 
      
 1600 
     | 
    
         
            +
                        --i, --k) { SA[i] = SA[k]; }
         
     | 
| 
      
 1601 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1602 
     | 
    
         
            +
                  BUCKET_BSTAR(c0, c0 + 1) = i - BUCKET_B(c0, c0) + 1; /* start point */
         
     | 
| 
      
 1603 
     | 
    
         
            +
                  BUCKET_B(c0, c0) = i; /* end point */
         
     | 
| 
      
 1604 
     | 
    
         
            +
                }
         
     | 
| 
      
 1605 
     | 
    
         
            +
              }
         
     | 
| 
      
 1606 
     | 
    
         
            +
             
     | 
| 
      
 1607 
     | 
    
         
            +
              return m;
         
     | 
| 
      
 1608 
     | 
    
         
            +
            }
         
     | 
| 
      
 1609 
     | 
    
         
            +
             
     | 
| 
      
 1610 
     | 
    
         
            +
            /* Constructs the suffix array by using the sorted order of type B* suffixes. */
         
     | 
| 
      
 1611 
     | 
    
         
            +
            static
         
     | 
| 
      
 1612 
     | 
    
         
            +
            void
         
     | 
| 
      
 1613 
     | 
    
         
            +
            construct_SA(const unsigned char *T, int *SA,
         
     | 
| 
      
 1614 
     | 
    
         
            +
                         int *bucket_A, int *bucket_B,
         
     | 
| 
      
 1615 
     | 
    
         
            +
                         int n, int m) {
         
     | 
| 
      
 1616 
     | 
    
         
            +
              int *i, *j, *k;
         
     | 
| 
      
 1617 
     | 
    
         
            +
              int s;
         
     | 
| 
      
 1618 
     | 
    
         
            +
              int c0, c1, c2;
         
     | 
| 
      
 1619 
     | 
    
         
            +
             
     | 
| 
      
 1620 
     | 
    
         
            +
              if(0 < m) {
         
     | 
| 
      
 1621 
     | 
    
         
            +
                /* Construct the sorted order of type B suffixes by using
         
     | 
| 
      
 1622 
     | 
    
         
            +
                   the sorted order of type B* suffixes. */
         
     | 
| 
      
 1623 
     | 
    
         
            +
                for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
         
     | 
| 
      
 1624 
     | 
    
         
            +
                  /* Scan the suffix array from right to left. */
         
     | 
| 
      
 1625 
     | 
    
         
            +
                  for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
         
     | 
| 
      
 1626 
     | 
    
         
            +
                      j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
         
     | 
| 
      
 1627 
     | 
    
         
            +
                      i <= j;
         
     | 
| 
      
 1628 
     | 
    
         
            +
                      --j) {
         
     | 
| 
      
 1629 
     | 
    
         
            +
                    if(0 < (s = *j)) {
         
     | 
| 
      
 1630 
     | 
    
         
            +
                      assert(T[s] == c1);
         
     | 
| 
      
 1631 
     | 
    
         
            +
                      assert(((s + 1) < n) && (T[s] <= T[s + 1]));
         
     | 
| 
      
 1632 
     | 
    
         
            +
                      assert(T[s - 1] <= T[s]);
         
     | 
| 
      
 1633 
     | 
    
         
            +
                      *j = ~s;
         
     | 
| 
      
 1634 
     | 
    
         
            +
                      c0 = T[--s];
         
     | 
| 
      
 1635 
     | 
    
         
            +
                      if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
         
     | 
| 
      
 1636 
     | 
    
         
            +
                      if(c0 != c2) {
         
     | 
| 
      
 1637 
     | 
    
         
            +
                        if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
         
     | 
| 
      
 1638 
     | 
    
         
            +
                        k = SA + BUCKET_B(c2 = c0, c1);
         
     | 
| 
      
 1639 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1640 
     | 
    
         
            +
                      assert(k < j);
         
     | 
| 
      
 1641 
     | 
    
         
            +
                      *k-- = s;
         
     | 
| 
      
 1642 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1643 
     | 
    
         
            +
                      assert(((s == 0) && (T[s] == c1)) || (s < 0));
         
     | 
| 
      
 1644 
     | 
    
         
            +
                      *j = ~s;
         
     | 
| 
      
 1645 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1646 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1647 
     | 
    
         
            +
                }
         
     | 
| 
      
 1648 
     | 
    
         
            +
              }
         
     | 
| 
      
 1649 
     | 
    
         
            +
             
     | 
| 
      
 1650 
     | 
    
         
            +
              /* Construct the suffix array by using
         
     | 
| 
      
 1651 
     | 
    
         
            +
                 the sorted order of type B suffixes. */
         
     | 
| 
      
 1652 
     | 
    
         
            +
              k = SA + BUCKET_A(c2 = T[n - 1]);
         
     | 
| 
      
 1653 
     | 
    
         
            +
              *k++ = (T[n - 2] < c2) ? ~(n - 1) : (n - 1);
         
     | 
| 
      
 1654 
     | 
    
         
            +
              /* Scan the suffix array from left to right. */
         
     | 
| 
      
 1655 
     | 
    
         
            +
              for(i = SA, j = SA + n; i < j; ++i) {
         
     | 
| 
      
 1656 
     | 
    
         
            +
                if(0 < (s = *i)) {
         
     | 
| 
      
 1657 
     | 
    
         
            +
                  assert(T[s - 1] >= T[s]);
         
     | 
| 
      
 1658 
     | 
    
         
            +
                  c0 = T[--s];
         
     | 
| 
      
 1659 
     | 
    
         
            +
                  if((s == 0) || (T[s - 1] < c0)) { s = ~s; }
         
     | 
| 
      
 1660 
     | 
    
         
            +
                  if(c0 != c2) {
         
     | 
| 
      
 1661 
     | 
    
         
            +
                    BUCKET_A(c2) = k - SA;
         
     | 
| 
      
 1662 
     | 
    
         
            +
                    k = SA + BUCKET_A(c2 = c0);
         
     | 
| 
      
 1663 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1664 
     | 
    
         
            +
                  assert(i < k);
         
     | 
| 
      
 1665 
     | 
    
         
            +
                  *k++ = s;
         
     | 
| 
      
 1666 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1667 
     | 
    
         
            +
                  assert(s < 0);
         
     | 
| 
      
 1668 
     | 
    
         
            +
                  *i = ~s;
         
     | 
| 
      
 1669 
     | 
    
         
            +
                }
         
     | 
| 
      
 1670 
     | 
    
         
            +
              }
         
     | 
| 
      
 1671 
     | 
    
         
            +
            }
         
     | 
| 
      
 1672 
     | 
    
         
            +
             
     | 
| 
      
 1673 
     | 
    
         
            +
            /* Constructs the burrows-wheeler transformed string directly
         
     | 
| 
      
 1674 
     | 
    
         
            +
               by using the sorted order of type B* suffixes. */
         
     | 
| 
      
 1675 
     | 
    
         
            +
            static
         
     | 
| 
      
 1676 
     | 
    
         
            +
            int
         
     | 
| 
      
 1677 
     | 
    
         
            +
            construct_BWT(const unsigned char *T, int *SA,
         
     | 
| 
      
 1678 
     | 
    
         
            +
                          int *bucket_A, int *bucket_B,
         
     | 
| 
      
 1679 
     | 
    
         
            +
                          int n, int m) {
         
     | 
| 
      
 1680 
     | 
    
         
            +
              int *i, *j, *k, *orig;
         
     | 
| 
      
 1681 
     | 
    
         
            +
              int s;
         
     | 
| 
      
 1682 
     | 
    
         
            +
              int c0, c1, c2;
         
     | 
| 
      
 1683 
     | 
    
         
            +
             
     | 
| 
      
 1684 
     | 
    
         
            +
              if(0 < m) {
         
     | 
| 
      
 1685 
     | 
    
         
            +
                /* Construct the sorted order of type B suffixes by using
         
     | 
| 
      
 1686 
     | 
    
         
            +
                   the sorted order of type B* suffixes. */
         
     | 
| 
      
 1687 
     | 
    
         
            +
                for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
         
     | 
| 
      
 1688 
     | 
    
         
            +
                  /* Scan the suffix array from right to left. */
         
     | 
| 
      
 1689 
     | 
    
         
            +
                  for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
         
     | 
| 
      
 1690 
     | 
    
         
            +
                      j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
         
     | 
| 
      
 1691 
     | 
    
         
            +
                      i <= j;
         
     | 
| 
      
 1692 
     | 
    
         
            +
                      --j) {
         
     | 
| 
      
 1693 
     | 
    
         
            +
                    if(0 < (s = *j)) {
         
     | 
| 
      
 1694 
     | 
    
         
            +
                      assert(T[s] == c1);
         
     | 
| 
      
 1695 
     | 
    
         
            +
                      assert(((s + 1) < n) && (T[s] <= T[s + 1]));
         
     | 
| 
      
 1696 
     | 
    
         
            +
                      assert(T[s - 1] <= T[s]);
         
     | 
| 
      
 1697 
     | 
    
         
            +
                      c0 = T[--s];
         
     | 
| 
      
 1698 
     | 
    
         
            +
                      *j = ~((int)c0);
         
     | 
| 
      
 1699 
     | 
    
         
            +
                      if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
         
     | 
| 
      
 1700 
     | 
    
         
            +
                      if(c0 != c2) {
         
     | 
| 
      
 1701 
     | 
    
         
            +
                        if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
         
     | 
| 
      
 1702 
     | 
    
         
            +
                        k = SA + BUCKET_B(c2 = c0, c1);
         
     | 
| 
      
 1703 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1704 
     | 
    
         
            +
                      assert(k < j);
         
     | 
| 
      
 1705 
     | 
    
         
            +
                      *k-- = s;
         
     | 
| 
      
 1706 
     | 
    
         
            +
                    } else if(s != 0) {
         
     | 
| 
      
 1707 
     | 
    
         
            +
                      *j = ~s;
         
     | 
| 
      
 1708 
     | 
    
         
            +
            #ifndef NDEBUG
         
     | 
| 
      
 1709 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1710 
     | 
    
         
            +
                      assert(T[s] == c1);
         
     | 
| 
      
 1711 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 1712 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1713 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1714 
     | 
    
         
            +
                }
         
     | 
| 
      
 1715 
     | 
    
         
            +
              }
         
     | 
| 
      
 1716 
     | 
    
         
            +
             
     | 
| 
      
 1717 
     | 
    
         
            +
              /* Construct the BWTed string by using
         
     | 
| 
      
 1718 
     | 
    
         
            +
                 the sorted order of type B suffixes. */
         
     | 
| 
      
 1719 
     | 
    
         
            +
              k = SA + BUCKET_A(c2 = T[n - 1]);
         
     | 
| 
      
 1720 
     | 
    
         
            +
              *k++ = (T[n - 2] < c2) ? ~((int)T[n - 2]) : (n - 1);
         
     | 
| 
      
 1721 
     | 
    
         
            +
              /* Scan the suffix array from left to right. */
         
     | 
| 
      
 1722 
     | 
    
         
            +
              for(i = SA, j = SA + n, orig = SA; i < j; ++i) {
         
     | 
| 
      
 1723 
     | 
    
         
            +
                if(0 < (s = *i)) {
         
     | 
| 
      
 1724 
     | 
    
         
            +
                  assert(T[s - 1] >= T[s]);
         
     | 
| 
      
 1725 
     | 
    
         
            +
                  c0 = T[--s];
         
     | 
| 
      
 1726 
     | 
    
         
            +
                  *i = c0;
         
     | 
| 
      
 1727 
     | 
    
         
            +
                  if((0 < s) && (T[s - 1] < c0)) { s = ~((int)T[s - 1]); }
         
     | 
| 
      
 1728 
     | 
    
         
            +
                  if(c0 != c2) {
         
     | 
| 
      
 1729 
     | 
    
         
            +
                    BUCKET_A(c2) = k - SA;
         
     | 
| 
      
 1730 
     | 
    
         
            +
                    k = SA + BUCKET_A(c2 = c0);
         
     | 
| 
      
 1731 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1732 
     | 
    
         
            +
                  assert(i < k);
         
     | 
| 
      
 1733 
     | 
    
         
            +
                  *k++ = s;
         
     | 
| 
      
 1734 
     | 
    
         
            +
                } else if(s != 0) {
         
     | 
| 
      
 1735 
     | 
    
         
            +
                  *i = ~s;
         
     | 
| 
      
 1736 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1737 
     | 
    
         
            +
                  orig = i;
         
     | 
| 
      
 1738 
     | 
    
         
            +
                }
         
     | 
| 
      
 1739 
     | 
    
         
            +
              }
         
     | 
| 
      
 1740 
     | 
    
         
            +
             
     | 
| 
      
 1741 
     | 
    
         
            +
              return orig - SA;
         
     | 
| 
      
 1742 
     | 
    
         
            +
            }
         
     | 
| 
      
 1743 
     | 
    
         
            +
             
     | 
| 
      
 1744 
     | 
    
         
            +
            /* Constructs the burrows-wheeler transformed string directly
         
     | 
| 
      
 1745 
     | 
    
         
            +
               by using the sorted order of type B* suffixes. */
         
     | 
| 
      
 1746 
     | 
    
         
            +
            static
         
     | 
| 
      
 1747 
     | 
    
         
            +
            int
         
     | 
| 
      
 1748 
     | 
    
         
            +
            construct_BWT_indexes(const unsigned char *T, int *SA,
         
     | 
| 
      
 1749 
     | 
    
         
            +
                                  int *bucket_A, int *bucket_B,
         
     | 
| 
      
 1750 
     | 
    
         
            +
                                  int n, int m,
         
     | 
| 
      
 1751 
     | 
    
         
            +
                                  unsigned char * num_indexes, int * indexes) {
         
     | 
| 
      
 1752 
     | 
    
         
            +
              int *i, *j, *k, *orig;
         
     | 
| 
      
 1753 
     | 
    
         
            +
              int s;
         
     | 
| 
      
 1754 
     | 
    
         
            +
              int c0, c1, c2;
         
     | 
| 
      
 1755 
     | 
    
         
            +
             
     | 
| 
      
 1756 
     | 
    
         
            +
              int mod = n / 8;
         
     | 
| 
      
 1757 
     | 
    
         
            +
              {
         
     | 
| 
      
 1758 
     | 
    
         
            +
                  mod |= mod >> 1;  mod |= mod >> 2;
         
     | 
| 
      
 1759 
     | 
    
         
            +
                  mod |= mod >> 4;  mod |= mod >> 8;
         
     | 
| 
      
 1760 
     | 
    
         
            +
                  mod |= mod >> 16; mod >>= 1;
         
     | 
| 
      
 1761 
     | 
    
         
            +
             
     | 
| 
      
 1762 
     | 
    
         
            +
                  *num_indexes = (unsigned char)((n - 1) / (mod + 1));
         
     | 
| 
      
 1763 
     | 
    
         
            +
              }
         
     | 
| 
      
 1764 
     | 
    
         
            +
             
     | 
| 
      
 1765 
     | 
    
         
            +
              if(0 < m) {
         
     | 
| 
      
 1766 
     | 
    
         
            +
                /* Construct the sorted order of type B suffixes by using
         
     | 
| 
      
 1767 
     | 
    
         
            +
                   the sorted order of type B* suffixes. */
         
     | 
| 
      
 1768 
     | 
    
         
            +
                for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
         
     | 
| 
      
 1769 
     | 
    
         
            +
                  /* Scan the suffix array from right to left. */
         
     | 
| 
      
 1770 
     | 
    
         
            +
                  for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
         
     | 
| 
      
 1771 
     | 
    
         
            +
                      j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
         
     | 
| 
      
 1772 
     | 
    
         
            +
                      i <= j;
         
     | 
| 
      
 1773 
     | 
    
         
            +
                      --j) {
         
     | 
| 
      
 1774 
     | 
    
         
            +
                    if(0 < (s = *j)) {
         
     | 
| 
      
 1775 
     | 
    
         
            +
                      assert(T[s] == c1);
         
     | 
| 
      
 1776 
     | 
    
         
            +
                      assert(((s + 1) < n) && (T[s] <= T[s + 1]));
         
     | 
| 
      
 1777 
     | 
    
         
            +
                      assert(T[s - 1] <= T[s]);
         
     | 
| 
      
 1778 
     | 
    
         
            +
             
     | 
| 
      
 1779 
     | 
    
         
            +
                      if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = j - SA;
         
     | 
| 
      
 1780 
     | 
    
         
            +
             
     | 
| 
      
 1781 
     | 
    
         
            +
                      c0 = T[--s];
         
     | 
| 
      
 1782 
     | 
    
         
            +
                      *j = ~((int)c0);
         
     | 
| 
      
 1783 
     | 
    
         
            +
                      if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
         
     | 
| 
      
 1784 
     | 
    
         
            +
                      if(c0 != c2) {
         
     | 
| 
      
 1785 
     | 
    
         
            +
                        if(0 <= c2) { BUCKET_B(c2, c1) = k - SA; }
         
     | 
| 
      
 1786 
     | 
    
         
            +
                        k = SA + BUCKET_B(c2 = c0, c1);
         
     | 
| 
      
 1787 
     | 
    
         
            +
                      }
         
     | 
| 
      
 1788 
     | 
    
         
            +
                      assert(k < j);
         
     | 
| 
      
 1789 
     | 
    
         
            +
                      *k-- = s;
         
     | 
| 
      
 1790 
     | 
    
         
            +
                    } else if(s != 0) {
         
     | 
| 
      
 1791 
     | 
    
         
            +
                      *j = ~s;
         
     | 
| 
      
 1792 
     | 
    
         
            +
            #ifndef NDEBUG
         
     | 
| 
      
 1793 
     | 
    
         
            +
                    } else {
         
     | 
| 
      
 1794 
     | 
    
         
            +
                      assert(T[s] == c1);
         
     | 
| 
      
 1795 
     | 
    
         
            +
            #endif
         
     | 
| 
      
 1796 
     | 
    
         
            +
                    }
         
     | 
| 
      
 1797 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1798 
     | 
    
         
            +
                }
         
     | 
| 
      
 1799 
     | 
    
         
            +
              }
         
     | 
| 
      
 1800 
     | 
    
         
            +
             
     | 
| 
      
 1801 
     | 
    
         
            +
              /* Construct the BWTed string by using
         
     | 
| 
      
 1802 
     | 
    
         
            +
                 the sorted order of type B suffixes. */
         
     | 
| 
      
 1803 
     | 
    
         
            +
              k = SA + BUCKET_A(c2 = T[n - 1]);
         
     | 
| 
      
 1804 
     | 
    
         
            +
              if (T[n - 2] < c2) {
         
     | 
| 
      
 1805 
     | 
    
         
            +
                if (((n - 1) & mod) == 0) indexes[(n - 1) / (mod + 1) - 1] = k - SA;
         
     | 
| 
      
 1806 
     | 
    
         
            +
                *k++ = ~((int)T[n - 2]);
         
     | 
| 
      
 1807 
     | 
    
         
            +
              }
         
     | 
| 
      
 1808 
     | 
    
         
            +
              else {
         
     | 
| 
      
 1809 
     | 
    
         
            +
                *k++ = n - 1;
         
     | 
| 
      
 1810 
     | 
    
         
            +
              }
         
     | 
| 
      
 1811 
     | 
    
         
            +
             
     | 
| 
      
 1812 
     | 
    
         
            +
              /* Scan the suffix array from left to right. */
         
     | 
| 
      
 1813 
     | 
    
         
            +
              for(i = SA, j = SA + n, orig = SA; i < j; ++i) {
         
     | 
| 
      
 1814 
     | 
    
         
            +
                if(0 < (s = *i)) {
         
     | 
| 
      
 1815 
     | 
    
         
            +
                  assert(T[s - 1] >= T[s]);
         
     | 
| 
      
 1816 
     | 
    
         
            +
             
     | 
| 
      
 1817 
     | 
    
         
            +
                  if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = i - SA;
         
     | 
| 
      
 1818 
     | 
    
         
            +
             
     | 
| 
      
 1819 
     | 
    
         
            +
                  c0 = T[--s];
         
     | 
| 
      
 1820 
     | 
    
         
            +
                  *i = c0;
         
     | 
| 
      
 1821 
     | 
    
         
            +
                  if(c0 != c2) {
         
     | 
| 
      
 1822 
     | 
    
         
            +
                    BUCKET_A(c2) = k - SA;
         
     | 
| 
      
 1823 
     | 
    
         
            +
                    k = SA + BUCKET_A(c2 = c0);
         
     | 
| 
      
 1824 
     | 
    
         
            +
                  }
         
     | 
| 
      
 1825 
     | 
    
         
            +
                  assert(i < k);
         
     | 
| 
      
 1826 
     | 
    
         
            +
                  if((0 < s) && (T[s - 1] < c0)) {
         
     | 
| 
      
 1827 
     | 
    
         
            +
                      if ((s & mod) == 0) indexes[s / (mod + 1) - 1] = k - SA;
         
     | 
| 
      
 1828 
     | 
    
         
            +
                      *k++ = ~((int)T[s - 1]);
         
     | 
| 
      
 1829 
     | 
    
         
            +
                  } else
         
     | 
| 
      
 1830 
     | 
    
         
            +
                    *k++ = s;
         
     | 
| 
      
 1831 
     | 
    
         
            +
                } else if(s != 0) {
         
     | 
| 
      
 1832 
     | 
    
         
            +
                  *i = ~s;
         
     | 
| 
      
 1833 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1834 
     | 
    
         
            +
                  orig = i;
         
     | 
| 
      
 1835 
     | 
    
         
            +
                }
         
     | 
| 
      
 1836 
     | 
    
         
            +
              }
         
     | 
| 
      
 1837 
     | 
    
         
            +
             
     | 
| 
      
 1838 
     | 
    
         
            +
              return orig - SA;
         
     | 
| 
      
 1839 
     | 
    
         
            +
            }
         
     | 
| 
      
 1840 
     | 
    
         
            +
             
     | 
| 
      
 1841 
     | 
    
         
            +
             
     | 
| 
      
 1842 
     | 
    
         
            +
            /*---------------------------------------------------------------------------*/
         
     | 
| 
      
 1843 
     | 
    
         
            +
             
     | 
| 
      
 1844 
     | 
    
         
            +
            /*- Function -*/
         
     | 
| 
      
 1845 
     | 
    
         
            +
             
     | 
| 
      
 1846 
     | 
    
         
            +
            int
         
     | 
| 
      
 1847 
     | 
    
         
            +
            divsufsort(const unsigned char *T, int *SA, int n, int openMP) {
         
     | 
| 
      
 1848 
     | 
    
         
            +
              int *bucket_A, *bucket_B;
         
     | 
| 
      
 1849 
     | 
    
         
            +
              int m;
         
     | 
| 
      
 1850 
     | 
    
         
            +
              int err = 0;
         
     | 
| 
      
 1851 
     | 
    
         
            +
             
     | 
| 
      
 1852 
     | 
    
         
            +
              /* Check arguments. */
         
     | 
| 
      
 1853 
     | 
    
         
            +
              if((T == NULL) || (SA == NULL) || (n < 0)) { return -1; }
         
     | 
| 
      
 1854 
     | 
    
         
            +
              else if(n == 0) { return 0; }
         
     | 
| 
      
 1855 
     | 
    
         
            +
              else if(n == 1) { SA[0] = 0; return 0; }
         
     | 
| 
      
 1856 
     | 
    
         
            +
              else if(n == 2) { m = (T[0] < T[1]); SA[m ^ 1] = 0, SA[m] = 1; return 0; }
         
     | 
| 
      
 1857 
     | 
    
         
            +
             
     | 
| 
      
 1858 
     | 
    
         
            +
              bucket_A = (int *)malloc(BUCKET_A_SIZE * sizeof(int));
         
     | 
| 
      
 1859 
     | 
    
         
            +
              bucket_B = (int *)malloc(BUCKET_B_SIZE * sizeof(int));
         
     | 
| 
      
 1860 
     | 
    
         
            +
             
     | 
| 
      
 1861 
     | 
    
         
            +
              /* Suffixsort. */
         
     | 
| 
      
 1862 
     | 
    
         
            +
              if((bucket_A != NULL) && (bucket_B != NULL)) {
         
     | 
| 
      
 1863 
     | 
    
         
            +
                m = sort_typeBstar(T, SA, bucket_A, bucket_B, n, openMP);
         
     | 
| 
      
 1864 
     | 
    
         
            +
                construct_SA(T, SA, bucket_A, bucket_B, n, m);
         
     | 
| 
      
 1865 
     | 
    
         
            +
              } else {
         
     | 
| 
      
 1866 
     | 
    
         
            +
                err = -2;
         
     | 
| 
      
 1867 
     | 
    
         
            +
              }
         
     | 
| 
      
 1868 
     | 
    
         
            +
             
     | 
| 
      
 1869 
     | 
    
         
            +
              free(bucket_B);
         
     | 
| 
      
 1870 
     | 
    
         
            +
              free(bucket_A);
         
     | 
| 
      
 1871 
     | 
    
         
            +
             
     | 
| 
      
 1872 
     | 
    
         
            +
              return err;
         
     | 
| 
      
 1873 
     | 
    
         
            +
            }
         
     | 
| 
      
 1874 
     | 
    
         
            +
             
     | 
| 
      
 1875 
     | 
    
         
            +
            int
         
     | 
| 
      
 1876 
     | 
    
         
            +
            divbwt(const unsigned char *T, unsigned char *U, int *A, int n, unsigned char * num_indexes, int * indexes, int openMP) {
         
     | 
| 
      
 1877 
     | 
    
         
            +
              int *B;
         
     | 
| 
      
 1878 
     | 
    
         
            +
              int *bucket_A, *bucket_B;
         
     | 
| 
      
 1879 
     | 
    
         
            +
              int m, pidx, i;
         
     | 
| 
      
 1880 
     | 
    
         
            +
             
     | 
| 
      
 1881 
     | 
    
         
            +
              /* Check arguments. */
         
     | 
| 
      
 1882 
     | 
    
         
            +
              if((T == NULL) || (U == NULL) || (n < 0)) { return -1; }
         
     | 
| 
      
 1883 
     | 
    
         
            +
              else if(n <= 1) { if(n == 1) { U[0] = T[0]; } return n; }
         
     | 
| 
      
 1884 
     | 
    
         
            +
             
     | 
| 
      
 1885 
     | 
    
         
            +
              if((B = A) == NULL) { B = (int *)malloc((size_t)(n + 1) * sizeof(int)); }
         
     | 
| 
      
 1886 
     | 
    
         
            +
              bucket_A = (int *)malloc(BUCKET_A_SIZE * sizeof(int));
         
     | 
| 
      
 1887 
     | 
    
         
            +
              bucket_B = (int *)malloc(BUCKET_B_SIZE * sizeof(int));
         
     | 
| 
      
 1888 
     | 
    
         
            +
             
     | 
| 
      
 1889 
     | 
    
         
            +
              /* Burrows-Wheeler Transform. */
         
     | 
| 
      
 1890 
     | 
    
         
            +
              if((B != NULL) && (bucket_A != NULL) && (bucket_B != NULL)) {
         
     | 
| 
      
 1891 
     | 
    
         
            +
                m = sort_typeBstar(T, B, bucket_A, bucket_B, n, openMP);
         
     | 
| 
      
 1892 
     | 
    
         
            +
             
     | 
| 
      
 1893 
     | 
    
         
            +
                if (num_indexes == NULL || indexes == NULL) {
         
     | 
| 
      
 1894 
     | 
    
         
            +
                    pidx = construct_BWT(T, B, bucket_A, bucket_B, n, m);
         
     | 
| 
      
 1895 
     | 
    
         
            +
                } else {
         
     | 
| 
      
 1896 
     | 
    
         
            +
                    pidx = construct_BWT_indexes(T, B, bucket_A, bucket_B, n, m, num_indexes, indexes);
         
     | 
| 
      
 1897 
     | 
    
         
            +
                }
         
     | 
| 
      
 1898 
     | 
    
         
            +
             
     | 
| 
      
 1899 
     | 
    
         
            +
                /* Copy to output string. */
         
     | 
| 
      
 1900 
     | 
    
         
            +
                U[0] = T[n - 1];
         
     | 
| 
      
 1901 
     | 
    
         
            +
                for(i = 0; i < pidx; ++i) { U[i + 1] = (unsigned char)B[i]; }
         
     | 
| 
      
 1902 
     | 
    
         
            +
                for(i += 1; i < n; ++i) { U[i] = (unsigned char)B[i]; }
         
     | 
| 
      
 1903 
     | 
    
         
            +
                pidx += 1;
         
     | 
| 
      
 1904 
     | 
    
         
            +
              } else {
         
     | 
| 
      
 1905 
     | 
    
         
            +
                pidx = -2;
         
     | 
| 
      
 1906 
     | 
    
         
            +
              }
         
     | 
| 
      
 1907 
     | 
    
         
            +
             
     | 
| 
      
 1908 
     | 
    
         
            +
              free(bucket_B);
         
     | 
| 
      
 1909 
     | 
    
         
            +
              free(bucket_A);
         
     | 
| 
      
 1910 
     | 
    
         
            +
              if(A == NULL) { free(B); }
         
     | 
| 
      
 1911 
     | 
    
         
            +
             
     | 
| 
      
 1912 
     | 
    
         
            +
              return pidx;
         
     | 
| 
      
 1913 
     | 
    
         
            +
            }
         
     |