extcsv 0.10.0

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data/lib/lsmodel.rb ADDED
@@ -0,0 +1,289 @@
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+ require 'matrix'
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+ require 'mathn'
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+
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+ # Modelling funtionality with the least square mathod
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+ module LSModel
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+ MINIMAL_VARIATION_SIZE = 8
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+
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+ # Function for simple computation of the slope of y over x, i.e. y =
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+ # ax, x is input and y is the measured value. Both should behave
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+ # like arrays.
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+ # This is the direct version of what the abstract modelling method would do
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+ def LSModel.linear_model(x,y)
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+ return nil if x.size != y.size
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+
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+ # recursive to_f for x and y
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+ params = [x, y]
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+ params.each_with_index {|param,index|
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+ params[index] = param.each_with_index {|v,i| param[i] = v.to_f}
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+ }
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+
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+ s = nil
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+ x_V = Vector.elements(x)
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+ y_V = Vector.elements(y)
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+ s = x_V.inner_product(y_V)/x_V.inner_product(x_V)
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+
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+ r, = stability_index("linear",s,y,x)
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+
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+ [s, r]
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+ end
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+
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+ # Method for affine regression y = ax + b
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+ # This is the direct version of what the abstract modelling method would do
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+ def LSModel.affine_model(x,y)
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+ return nil if x.size != y.size
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+ n = x.size.to_f
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+ params = [x, y]
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+ params.each_with_index {|param,index|
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+ params[index] = param.each_with_index {|v,i| param[i] = v.to_f}
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+ }
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+ x_V = Vector.elements(x)
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+ y_V = Vector.elements(y)
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+ x_S = x.inject {|sum,x_i| sum += x_i}
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+ y_S = y.inject {|sum,y_i| sum += y_i}
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+ # gradient
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+ a = (n*x_V.inner_product(y_V) - x_S*y_S)/(n*x_V.inner_product(x_V) - x_S*x_S)
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+ # offset
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+ b = (y_S - a*x_S)/n
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+ # fitnes
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+ r, = stability_index("affine",[a,b],y,x)
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+ [a,b,r]
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+ end
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+
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+
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+ # mode abstract Modelling: multiple (but same) dimesions are allowed in
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+ # input/output data arrays (ins, out)
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+ # model should have the form:
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+ # <tt>"[1.0,input[0][i],input[1][i]]"</tt> for affine model
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+ #
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+ # !!EXPERIMENTAL!! Better use abstract_model
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+ def LSModel.abstract_modelD(ins, outs, model)
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+ ###########################################################################
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+ # Calculation of the coefficients for the given model
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+ #
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+ # check for data quality
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+ # 1. Is there enough data?
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+ if ins[0].size < 2
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+ puts "To few datasets!"
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+ raise
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+ end
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+ # 2. Has any dataset the same size?
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+ sizes = []
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+ [ins,outs].each {|datas| datas.each {|dataset| sizes << dataset.size}}
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+ if sizes.uniq.size != 1
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+ puts "Use datasets with same number of values!"
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+ raise
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+ end
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+ # 3. Convert everything from String to Float
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+ [ins,outs].each {|datas| datas.collect!{|data| data.collect {|data_| data_.to_f}}}
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+ # 4. preprocess the model
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+ model = convertModelInputString(model)
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+ # Create input/output matrices
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+ input = Matrix.columns(ins)
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+ output = Matrix.columns(outs)
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+
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+ # Create the modelling Matrix
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+ rows = []
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+ (0...sizes[0]).each {|i| rows << eval(model) }
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+ model_matrix = Matrix.rows(rows)
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+
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+ # Computation of coefficients
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+ model_coeffs = (model_matrix.transpose * model_matrix).inverse * model_matrix.transpose * output
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+
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+ ###########################################################################
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+ # Calculation of the stability
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+ r_total = 0.0
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+ r_reg = 0.0
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+ r_res = 0.0
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+ modelDim = modelDim(model,true)
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+ #test p model + "=>" + "modelDim: " + modelDim.to_s
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+ # mean values for each measured variable
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+ n = output.row_size
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+ meanValues = []
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+ output.column_vectors.each {|cv| meanValues << cv.to_a.inject {|sum,v| sum + v}/n}
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+ # each measurement variable has to be treated separately
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+ stability = []
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+ output.column_vectors.each_with_index {|output_vector,k|
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+ modelOutput = model_matrix * model_coeffs.column(k)
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+ output_vector.to_a.each_with_index {|output_value,i|
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+ r_total += (output_value - meanValues[k])**2
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+ r_res += (output_value - modelOutput[i])**2
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+ r_reg += (modelOutput[i] - meanValues[k])**2
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+ }
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+ r = r_reg/r_total
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+ r_improved = 1.0 - (1.0 - r**2)*(k-1.0)/(k - modelDim -1.0)
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+ stability << [r,r_improved]
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+ }
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+
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+ return [model_coeffs, stability]
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+ end
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+
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+ def LSModel.convertModelInputString(model)
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+ "[" + model.gsub(/\[(\d+)\]/,"\[i,\\1\]") + "]"
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+ end
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+
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+ def LSModel.modelHasConstant?(model)
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+ input = Matrix.scalar(100,0.0)
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+ i = 0
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+ modelArray = eval(model)
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+ modelArray.include?(1.0)
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+ end
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+
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+ # For the calculation of the adjusted stability index, a special Dimensionis
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+ # needed: the number of coefficients without the constant term.
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+ def LSModel.modelDim(model,forAdjustedStability=false)
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+ input = Matrix.scalar(100,0.0)
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+ i = 0
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+ dim = eval(model).size
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+ (forAdjustedStability and modelHasConstant?(model)) ? dim - 1 : dim
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+ end
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+
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+ def LSModel.modelOutput(model, model_coeffs, inputs)
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+ inputs.collect!{|input| input.collect {|inn| inn.to_f}}
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+ input = Matrix.rows(inputs)
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+ model = convertModelInputString(model)
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+ # Create the modelling Matrix
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+ rows = []
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+ (0...input.row_size).each {|i| rows << eval(model) }
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+ model_matrix = Matrix.rows(rows)
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+ #test pp model_matrix
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+ modelOutput = model_matrix * model_coeffs
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+ end
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+
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+ # Abstract modelling method. See test files for usage.
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+ def LSModel.abstract_model(ins, outs, model, force=false)
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+ minimal_variaion_size = (force) ? 2 : MINIMAL_VARIATION_SIZE
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+ unless (ins[0].size == outs.size and outs.size >= minimal_variaion_size)
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+ $stdout << "ERROR:\nMINIMAL_VARIATION_SIZE #{MINIMAL_VARIATION_SIZE} is not reached!\n"
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+ $stdout << "Only #{ins[0].size} measurements are present.\n"
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+ raise
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+ end
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+
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+ params = [outs,ins]
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+ params.each_with_index {|param,index|
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+ if index == 0
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+ # 'out' is a single array
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+ params[index] = param.each_with_index {|v,i| param[i] = v.to_f}
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+ else
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+ # 'ins' is an array of arrays
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+ param.each_with_index {|inn,i|
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+ param[i] = inn.each_with_index {|v,i| inn[i] = v.to_f}
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+ }
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+ params[index] = param
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+ end
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+ }
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+ out_vector = Vector.elements(outs)
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+ rows = []
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+ (0..ins.first.size-1).each {|i|
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+ rows << eval(model)
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+ var = eval(model)
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+ }
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+ matrix = Matrix.rows(rows)
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+ model_coeffs = (matrix.transpose * matrix).inverse * matrix.transpose * out_vector
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+ r, = abstract_stability_index(ins,
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+ outs,
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+ model,
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+ model_coeffs)
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+ [model_coeffs,r]
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+ end
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+
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+ # Computation of fjhgugui<F5>zt56789gfrihi
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+ #
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+ # ,löl,00, <- this was nick ;)
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+ #
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+ # Computation of stability index according the the given model with its
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+ # coeffs
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+ def LSModel.abstract_stability_index(ins,outs,model,model_coeffs)
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+ r_total = 0.0
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+ r_reg = 0.0
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+ r_res = 0.0
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+ n = outs.size.to_f
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+ outs_mid = outs.inject {|sum,i| sum + i } / n
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+
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+ outs.each_with_index {|out,i|
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+ out_by_model = model_coeffs.inner_product(Vector.elements(eval(model)))
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+ r_total += (outs[i] - outs_mid) * (outs[i] - outs_mid)
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+ r_res += (outs[i] - out_by_model) * (outs[i] - out_by_model)
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+ r_reg += (out_by_model - outs_mid) * (out_by_model - outs_mid)
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+ }
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+
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+ r_ = r_reg/r_total
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+ r = 1.0 - r_res/r_total
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+
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+ [r, r_]
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+ end
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+
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+ # This function computed the know variance according the the model given by
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+ # the 'mode' parameter:
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+ # * 'linear' for the linear model y=s*x
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+ def LSModel.stability_index(mode, s, y, *x)
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+ r_total = 0.0
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+ r_reg = 0.0
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+ r_res = 0.0
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+ n = y.size.to_f
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+ y_mid = y.inject {|sum,i| sum + i } / n
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+
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+ case mode
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+ when "linear"
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+ x = x[0]
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+ y.each_with_index {|y_i,i|
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+ ys_i = s*x[i]
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+ r_total += (y_i - y_mid) * (y_i - y_mid)
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+ r_res += (y_i - ys_i) * (y_i - ys_i)
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+ r_reg += (ys_i - y_mid) * (ys_i - y_mid)
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+ }
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+ when "affine"
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+ a, b = s
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+ y.each_with_index {|y_i,i|
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+ ys_i = a*x[0][i] + b
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+ r_total += (y_i - y_mid) * (y_i - y_mid)
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+ r_res += (y_i - ys_i) * (y_i - ys_i)
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+ r_reg += (ys_i - y_mid) * (ys_i - y_mid)
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+ }
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+ else
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+ puts "Wrong working mode in function 'stability_index'! " +
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+ "Use 'linear' or 'affine' instead.'"
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+ raise
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+ end
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+
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+ r_ = r_reg/r_total
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+ r = 1.0 - r_res/r_total
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+
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+ [r, r_]
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+ end
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+ def LSModel.test_model(ins, out, model, model_coeffs)
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+ params = [out,ins]
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+ params.each_with_index {|param,index|
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+ if index == 0 # 'out' is a single array
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+ params[index] = param.each_with_index {|v,i| param[i] = v.to_f}
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+ else # 'ins' is an array of arrays
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+ param.each_with_index {|inn,i|
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+ param[i] = inn.each_with_index {|v,i| inn[i] = v.to_f}
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+ }
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+ params[index] = param
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+ end
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+ }
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+ r_total = 0.0
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+ r_reg = 0.0
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+ r_res = 0.0
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+ n = out.size.to_f
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+ out_mid = out.inject {|sum,i| sum + i } / n
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+
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+ model_out = []
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+ model_diff = []
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+
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+ out.each_with_index {|value,i|
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+ out_by_model = model_coeffs.inner_product(Vector.elements(eval(model)))
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+ model_out << out_by_model
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+ model_diff << out_by_model - value
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+ r_total += (value - out_mid) * (value - out_mid)
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+ r_res += (value - out_by_model) * (value - out_by_model)
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+ r_reg += (out_by_model - out_mid) * (out_by_model - out_mid)
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+ }
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+
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+ r_ = r_reg/r_total
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+ r = 1.0 - r_res/r_total
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+
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+ {:r => r,:model => model_out, :diff => model_diff}
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+ end
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+ end
data/rakefile ADDED
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+ begin
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+ require 'rubygems'
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+ require 'rake/gempackagetask'
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+ rescue Exception
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+ nil
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+ end
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+ require 'rake/clean'
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+ require 'rake/testtask'
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+ require 'rake/rdoctask'
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+
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+ CLEAN.include('**/*.out')
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+ SPEC = eval(File.open("gemspec","r").read)
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+ CHANGELOGFILE = "CHANGELOG"
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+
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+ def filename_to_sym(filename)
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+ File.basename(filename,File.extname(filename)).to_sym
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+ end
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+
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+ # ====================================================================
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+ # TEST TASKS
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+ test_tasks = {
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+ :test_all => ["Run all tests"],
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+ :test_gr => ["Run graphical Test"],
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+ :test_syn => ["Syntax Check for each ruby file in the project"]
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+ }
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+ # Syntax checkning task
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+ task :test_syn do
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+ Dir.glob("**/*.rb").each {|file|
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+ printf "Checking Syntax of #{file} ..."
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+ system("ruby -c #{file}")
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+ }
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+ end
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+ # Test tasks for each test file
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+ SPEC.test_files.each do |test_file|
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+ next unless File.extname(test_file) == ".rb"
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+ Rake::TestTask.new(filename_to_sym(test_file)) do |t|
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+ test_tasks[:test_all] << filename_to_sym(test_file)
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+ test_tasks[:test_gr] << filename_to_sym(test_file) if /display/.match(test_file)
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+ t.test_files = FileList[test_file]
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+ t.warning = false
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+ t.verbose = true
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+ end
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+ end
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+
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+ # Test Tasks for groups of test files
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+ test_tasks.each do |k,v|
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+ desc v[0]
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+ task k => v[1..-1]
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+ end
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+ # ====================================================================
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+ # Create a task that will package the software into distributable
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+ # tar, zip and gem files.
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+ if ! defined?(Gem)
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+ puts "Package Target requires RubyGEMs"
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+ else
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+ package_task = Rake::GemPackageTask.new(SPEC) do |pkg|
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+ pkg.need_zip = false
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+ pkg.need_tar = false
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+ end
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+ end
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+
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+ # ====================================================================
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+ desc "Build package for further developement"
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+ task :build_dev do
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+ files = SPEC.files + Dir.glob("test/data/*")
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+ #require 'pp'; pp files;end
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+ com = "tar czf pkg/#{SPEC.name}-#{SPEC.version}-src.tgz #{files.join(" ")}"
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+ system(com)
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+ end
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+ # ====================================================================
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+ desc "Install the Library with docs"
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+ task :install do
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+ command = "gem install pkg/#{SPEC.name}-#{SPEC.version}.gem"
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+ puts command
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+ system(command)
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+ end
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+ task :smallInstall do
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+ command = "gem install pkg/#{SPEC.name}-#{SPEC.version}.gem --no-ri --no-rdoc"
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+ puts command
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+ system(command)
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+ end
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+ #desc "Only install what is in bin to /usr/local/bin"
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+ #task :binstall do
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+ # if File.directory?('/usr/local/bin')
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+ # bins = Dir.glob("bin/*.rb")
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+ # command = "install -m 755 #{bins.join(' ')} /usr/local/bin"
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+ # puts command
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+ # system(command)
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+ # end
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+ #end
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+ # ====================================================================
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+ desc "All"
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+ task :all => [:install, :populate] do
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+ end
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+
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+ # ====================================================================
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+ # Create a task to build the RDOC documentation tree.
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+ Rake::RDocTask.new("rdoc") { |rdoc|
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+ rdoc.rdoc_dir = 'rdoc'
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+ rdoc.title = "extcsv - Make csv-like Data feel ike DB-tables"
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+ rdoc.options << '-ad' << '--line-numbers' << '--inline-source'
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+ rdoc.rdoc_files.include('lib/**/*.rb', 'doc/**/*.rdoc')
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+ }
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+
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+ ############################################################
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+ # ====================================================================
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+ # Task to build and populate the changelog
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+ desc "build changelog"
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+ task :changelog do
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+ changelogfile_pop = "#{SPEC.name}_#{CHANGELOGFILE}.html"
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+ changelog_proc = "/usr/local/bin/redcloth"
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+ command = "#{changelog_proc} #{CHANGELOGFILE} > #{changelogfile_pop}"
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+ puts command
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+ system(command)
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+ end
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+ ###############################################################################
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+ desc "renew the tags file"
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+ task :tags do
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+ com = "rtags --vi -f tags lib/*.rb"
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+ system(com)
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+ end
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+ #
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+ desc "go on editing from last Session if possible"
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+ task :edit do
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+ visual_mode = (ENV["vimode"].nil?) ? '-p' : ENV["vimode"]
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+ com = (File.exist?("Session.vim"))\
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+ ? 'vim -S'\
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+ : "vim #{SPEC.files.join(" ")} rakefile #{visual_mode}"
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+ puts com
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+ system(com)
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+ end
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+ #
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+ # vim:ft=ruby
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+ #
@@ -0,0 +1,116 @@
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+ Step try col1 col2 col3 col4 col5 col6 col7 col8
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+ 1 1 80,0 50,0 6,14 5 233,6 0,2211 2,0217 1,9672
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+ 2 1 80,0 100,0 6,47 5 244,0 0,2090 2,1445 2,0345
4
+ 3 1 80,0 150,0 6,67 5 251,8 0,1996 2,2393 2,0832
5
+ 4 1 80,0 200,0 6,82 5 255,5 0,1967 2,2805 2,1087
6
+ 5 1 80,0 250,0 6,94 5 261,5 0,1902 2,3529 2,1465
7
+ 6 1 80,0 300,0 7,04 5 267,3 0,1836 2,4247 2,1819
8
+ 7 1 80,0 350,0 7,12 5 272,3 0,1792 2,4834 2,2145
9
+ 8 1 80,0 400,0 7,20 5 278,6 0,1725 2,5616 2,2528
10
+ 9 1 80,0 450,0 7,26 5 281,3 0,1700 2,5942 2,2698
11
+ 10 1 80,0 500,0 7,33 5 286,5 0,1641 2,6609 2,3001
12
+ 11 1 80,0 550,0 7,38 5 290,8 0,1598 2,7148 2,3260
13
+ 12 1 100,0 50,0 6,12 5 265,1 0,2187 2,3014 2,2281
14
+ 13 1 100,0 100,0 6,45 5 272,6 0,2118 2,3874 2,2782
15
+ 14 1 100,0 150,0 6,65 5 277,5 0,2086 2,4402 2,3130
16
+ 15 1 100,0 200,0 6,80 5 282,8 0,2028 2,5050 2,3459
17
+ 16 1 100,0 250,0 6,92 5 287,3 0,1993 2,5560 2,3763
18
+ 17 1 100,0 300,0 7,01 5 293,6 0,1928 2,6333 2,4152
19
+ 18 1 100,0 350,0 7,10 5 297,5 0,1893 2,6798 2,4401
20
+ 19 1 100,0 400,0 7,17 5 302,9 0,1835 2,7480 2,4723
21
+ 20 1 100,0 450,0 7,24 5 306,1 0,1805 2,7872 2,4921
22
+ 21 1 100,0 500,0 7,30 5 310,2 0,1764 2,8387 2,5167
23
+ 22 1 100,0 550,0 7,36 5 313,7 0,1722 2,8853 2,5360
24
+ 23 1 100,0 600,0 7,41 5 316,7 0,1682 2,9270 2,5515
25
+ 24 1 100,0 650,0 7,46 5 318,4 0,1655 2,9523 2,5593
26
+ 25 1 100,0 700,0 7,50 5 321,5 0,1618 2,9942 2,5760
27
+ 26 1 100,0 750,0 7,54 5 320,4 0,1618 2,9840 2,5672
28
+ 27 1 100,0 800,0 7,58 5 322,7 0,1582 3,0183 2,5776
29
+ 28 1 100,0 850,0 7,62 5 326,0 0,1540 3,0644 2,5945
30
+ 29 1 100,0 900,0 7,66 5 328,3 0,1508 3,0977 2,6056
31
+ 30 1 100,0 950,0 7,69 5 331,4 0,1482 3,1365 2,6242
32
+ 31 1 100,0 1000,0 7,72 5 333,7 0,1459 3,1668 2,6372
33
+ 32 1 120,0 50,0 6,11 5 296,3 0,2167 2,5788 2,4863
34
+ 33 1 120,0 100,0 6,43 5 302,6 0,2101 2,6558 2,5254
35
+ 34 1 120,0 150,0 6,63 5 306,0 0,2077 2,6938 2,5487
36
+ 35 1 120,0 200,0 6,78 5 311,5 0,2033 2,7575 2,5850
37
+ 36 1 120,0 250,0 6,90 5 315,4 0,2000 2,8036 2,6102
38
+ 37 1 120,0 300,0 6,99 5 318,8 0,1980 2,8409 2,6339
39
+ 38 1 120,0 350,0 7,08 5 323,2 0,1934 2,8966 2,6600
40
+ 39 1 120,0 400,0 7,15 5 327,7 0,1898 2,9500 2,6889
41
+ 40 1 120,0 450,0 7,22 5 331,1 0,1867 2,9920 2,7098
42
+ 41 1 120,0 500,0 7,28 5 334,0 0,1839 3,0286 2,7271
43
+ 42 1 120,0 550,0 7,33 5 335,8 0,1817 3,0532 2,7367
44
+ 43 1 120,0 600,0 7,38 5 336,7 0,1809 3,0643 2,7421
45
+ 44 1 120,0 650,0 7,43 5 337,4 0,1774 3,0838 2,7397
46
+ 45 1 120,0 700,0 7,47 5 337,8 0,1762 3,0920 2,7401
47
+ 46 1 120,0 750,0 7,51 5 340,0 0,1733 3,1231 2,7512
48
+ 47 1 120,0 800,0 7,55 5 343,1 0,1692 3,1672 2,7666
49
+ 48 1 120,0 850,0 7,59 5 345,4 0,1672 3,1961 2,7804
50
+ 49 1 120,0 900,0 7,62 5 347,9 0,1646 3,2293 2,7942
51
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