extcite 0.3.0 → 0.4.0

data/extcite.gemspec

@@ -6,7 +6,7 @@ require 'extcite/version'
 Gem::Specification.new do |s|
   s.name        = 'extcite'
   s.version     = Extcite::VERSION
-  s.date        = '2020-04-07'
+  s.date        = '2020-04-15'
   s.summary     = "Citations from PDFs"
   s.description = "Gets DOIS and generates citations for your papers"
   s.authors     = "Scott Chamberlain"
@@ -26,12 +26,22 @@ Gem::Specification.new do |s|
   s.add_development_dependency 'simplecov', '~> 0.18.0'
   s.add_development_dependency 'codecov', '~> 0.1.16'
 
+  s.add_runtime_dependency 'timeout', '~> 0.1.0'
   s.add_runtime_dependency 'faraday', '>= 0.15', '< 1.1'
-  s.add_runtime_dependency 'faraday_middleware', '>= 0.12.2', '< 0.14.0'
-  s.add_runtime_dependency 'thor', '~> 0.20.3'
+  s.add_runtime_dependency 'faraday_middleware', '>= 0.12.2', '< 1.1.0'
+  s.add_runtime_dependency 'thor', '>= 0.20.3', '< 1.1.0'
   s.add_runtime_dependency 'parallel', '~> 1.19'
   s.add_runtime_dependency 'oga', '>= 2.15', '< 4.0'
-  s.add_runtime_dependency 'serrano', '~> 0.5.2'
+  s.add_runtime_dependency 'serrano', '>= 0.5.2', '< 0.7.0'
   s.add_runtime_dependency 'bibtex-ruby', '~> 5.0', '>= 5.0.1'
   s.add_runtime_dependency 'pdf-reader', '~> 2.4'
+
+  s.metadata = {
+    'homepage_uri' => 'https://github.com/sckott/extcite',
+    'changelog_uri' =>
+      "https://github.com/sckott/extcite/releases/tag/v#{s.version}",
+    'source_code_uri' => 'https://github.com/sckott/extcite',
+    'bug_tracker_uri' => 'https://github.com/sckott/extcite/issues',
+    'documentation_uri' => 'https://xenodochial-stonebraker-ad2732.netlify.app'
+  }
 end

data/lib/extcite.rb

@@ -7,7 +7,7 @@ require "extcite/version"
 require 'serrano'
 require 'pdf-reader'
 require 'faraday'
-
+require 'timeout'
 
 
 module Extcite
@@ -142,36 +142,43 @@ module Extcite
       rr = PDF::Reader.new(x)
       pdfmeta = rr.metadata
       if !pdfmeta.nil?
-        xml = Oga.parse_xml(pdfmeta);
         begin
-          tt = xml.xpath('//rdf:Description')
-          # try dc:identifier attribute
-          ss = tt.attr('dc:identifier')[0]
-          if !ss.nil?
-            ids = ss.text.sub(/doi:/, '')
-          else
-            # try prism:doi node
-            pdoi = xml.xpath('//rdf:Description//prism:doi')
-            if pdoi.length == 1
-              ids = pdoi.text
+          xml = Oga.parse_xml(pdfmeta);
+        rescue Exception => e
+          xml = nil
+        end
+
+        if !xml.nil?
+          begin
+            tt = xml.xpath('//rdf:Description')
+            # try dc:identifier attribute
+            ss = tt.attr('dc:identifier')[0]
+            if !ss.nil?
+              ids = ss.text.sub(/doi:/, '')
             else
-              # try pdf:WPS-ARTICLEDOI node
-              wpsdoi = xml.xpath('//rdf:Description//pdf:WPS-ARTICLEDOI')
-              if wpsdoi.length == 1
-                ids = wpsdoi.text
+              # try prism:doi node
+              pdoi = xml.xpath('//rdf:Description//prism:doi')
+              if pdoi.length == 1
+                ids = pdoi.text
               else
-                # try pdfx:WPS-ARTICLEDOI node
-                pdfxwpsdoi = xml.xpath('//rdf:Description//pdfx:WPS-ARTICLEDOI')
-                if pdfxwpsdoi.length == 1
-                  ids = pdfxwpsdoi.text
+                # try pdf:WPS-ARTICLEDOI node
+                wpsdoi = xml.xpath('//rdf:Description//pdf:WPS-ARTICLEDOI')
+                if wpsdoi.length == 1
+                  ids = wpsdoi.text
                 else
-                  ids = nil
+                  # try pdfx:WPS-ARTICLEDOI node
+                  pdfxwpsdoi = xml.xpath('//rdf:Description//pdfx:WPS-ARTICLEDOI')
+                  if pdfxwpsdoi.length == 1
+                    ids = pdfxwpsdoi.text
+                  else
+                    ids = nil
+                  end
                 end
               end
             end
+          rescue
+            ids = nil
           end
-        rescue
-          ids = nil
         end
       end
 
@@ -295,7 +302,15 @@ module Extcite
 
   def self.extract_text_one(x)
     rr = PDF::Reader.new(x)
-    return rr.pages.map { |page| page.text }.join("\n")
+    return rr.pages.map { |page|
+      begin
+        Timeout.timeout(1) do 
+          page.text
+        end
+      rescue Timeout::Error
+        next
+      end
+    }.join("\n")
   end
 
 end

data/lib/extcite/version.rb

@@ -1,3 +1,3 @@
 module Extcite
-  VERSION = "0.3.0"
+  VERSION = "0.4.0"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: extcite
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.4.0
 platform: ruby
 authors:
 - Scott Chamberlain
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-04-07 00:00:00.000000000 Z
+date: 2020-04-15 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -98,6 +98,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 0.1.16
+- !ruby/object:Gem::Dependency
+  name: timeout
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.1.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.1.0
 - !ruby/object:Gem::Dependency
   name: faraday
   requirement: !ruby/object:Gem::Requirement
@@ -127,7 +141,7 @@ dependencies:
         version: 0.12.2
     - - "<"
       - !ruby/object:Gem::Version
-        version: 0.14.0
+        version: 1.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
@@ -137,21 +151,27 @@ dependencies:
         version: 0.12.2
     - - "<"
       - !ruby/object:Gem::Version
-        version: 0.14.0
+        version: 1.1.0
 - !ruby/object:Gem::Dependency
   name: thor
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.20.3
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: 1.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.20.3
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: 1.1.0
 - !ruby/object:Gem::Dependency
   name: parallel
   requirement: !ruby/object:Gem::Requirement
@@ -190,16 +210,22 @@ dependencies:
   name: serrano
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.5.2
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: 0.7.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: 0.5.2
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: 0.7.0
 - !ruby/object:Gem::Dependency
   name: bibtex-ruby
   requirement: !ruby/object:Gem::Requirement
@@ -250,6 +276,31 @@ files:
 - README.md
 - Rakefile
 - bin/extcite
+- doc/Array.html
+- doc/Configuration.html
+- doc/Extcite.html
+- doc/Hash.html
+- doc/String.html
+- doc/Textminer.html
+- doc/Textminer/Fetch.html
+- doc/Textminer/Mined.html
+- doc/Textminer/Miner.html
+- doc/Textminer/Request.html
+- doc/Textminer/Response.html
+- doc/_index.html
+- doc/class_list.html
+- doc/css/common.css
+- doc/css/full_list.css
+- doc/css/style.css
+- doc/file.README.html
+- doc/file_list.html
+- doc/frames.html
+- doc/index.html
+- doc/js/app.js
+- doc/js/full_list.js
+- doc/js/jquery.js
+- doc/method_list.html
+- doc/top-level-namespace.html
 - extcite.gemspec
 - extra/fetch.rb
 - extra/fetch_method.rb
@@ -261,7 +312,12 @@ files:
 homepage: https://github.com/sckott/extcite
 licenses:
 - MIT
-metadata: {}
+metadata:
+  homepage_uri: https://github.com/sckott/extcite
+  changelog_uri: https://github.com/sckott/extcite/releases/tag/v0.4.0
+  source_code_uri: https://github.com/sckott/extcite
+  bug_tracker_uri: https://github.com/sckott/extcite/issues
+  documentation_uri: https://xenodochial-stonebraker-ad2732.netlify.app
 post_install_message: 
 rdoc_options: []
 require_paths: