experiment 0.2.0 → 0.3.0
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- data/Manifest.txt +5 -3
- data/{README.rdoc → README.md} +26 -57
- data/Rakefile +3 -1
- data/bin/experiment +28 -9
- data/lib/experiment/base.rb +165 -65
- data/lib/experiment/config.rb +140 -11
- data/lib/experiment/distributed.rb +51 -20
- data/lib/experiment/factorial.rb +227 -0
- data/lib/experiment/generator/{experiment_template.rb → experiment_template.rb.txt} +10 -10
- data/lib/experiment/generator/readme_template.txt +2 -2
- data/lib/experiment/notify.rb +150 -146
- data/lib/experiment/params.rb +18 -0
- data/lib/experiment/runner.rb +50 -8
- data/lib/experiment/stats/descriptive.rb +58 -0
- data/lib/experiment/work_server.rb +20 -5
- data/lib/experiment.rb +1 -1
- data/test/test_stats.rb +9 -3
- metadata +12 -9
- data/lib/experiment/stats.rb +0 -43
metadata
CHANGED
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@@ -4,9 +4,9 @@ version: !ruby/object:Gem::Version
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4
4
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prerelease: false
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5
5
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segments:
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6
6
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- 0
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7
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-
-
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7
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+
- 3
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8
8
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- 0
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9
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-
version: 0.
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9
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+
version: 0.3.0
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10
10
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platform: ruby
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11
11
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authors:
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12
12
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- Jakub Hampl
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@@ -14,7 +14,7 @@ autorequire:
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14
14
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bindir: bin
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15
15
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cert_chain: []
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16
16
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17
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-
date: 2010-
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17
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+
date: 2010-12-06 00:00:00 +00:00
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18
18
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default_executable:
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19
19
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dependencies:
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20
20
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- !ruby/object:Gem::Dependency
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@@ -47,7 +47,7 @@ dependencies:
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47
47
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version: 2.6.2
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48
48
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type: :development
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49
49
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version_requirements: *id002
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50
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-
description:
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50
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+
description: It provides basic command line tools for simply defining things like cross validations, factorial experimental design and basic statistics. All of this can be run in a distributed manner.
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51
51
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email:
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52
52
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- honitom@seznam.cz
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53
53
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executables:
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@@ -59,22 +59,25 @@ extra_rdoc_files:
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59
59
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- History.txt
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60
60
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- Manifest.txt
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61
61
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- lib/experiment/generator/readme_template.txt
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62
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+
- lib/experiment/generator/experiment_template.rb.txt
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62
63
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files:
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63
64
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- History.txt
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64
65
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- Manifest.txt
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65
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-
- README.
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66
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+
- README.md
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66
67
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- Rakefile
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67
68
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- lib/experiment.rb
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68
69
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- lib/experiment/config.rb
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69
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-
- lib/experiment/stats.rb
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70
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+
- lib/experiment/stats/descriptive.rb
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70
71
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- lib/experiment/runner.rb
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71
72
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- lib/experiment/generator/readme_template.txt
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72
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-
- lib/experiment/generator/experiment_template.rb
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73
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+
- lib/experiment/generator/experiment_template.rb.txt
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73
74
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- lib/experiment/generator/Rakefile
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74
75
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- lib/experiment/base.rb
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75
76
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- lib/experiment/notify.rb
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76
77
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- lib/experiment/work_server.rb
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77
78
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- lib/experiment/distributed.rb
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79
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+
- lib/experiment/factorial.rb
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80
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+
- lib/experiment/params.rb
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78
81
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- test/test_experiment.rb
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79
82
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- test/test_helper.rb
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80
83
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- bin/experiment
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@@ -83,7 +86,7 @@ files:
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83
86
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- test/test_config.rb
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84
87
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- test/test_stats.rb
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85
88
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has_rdoc: true
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86
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-
homepage:
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89
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+
homepage:
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87
90
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licenses: []
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88
91
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89
92
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post_install_message:
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@@ -114,7 +117,7 @@ rubyforge_project: experiment
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114
117
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rubygems_version: 1.3.7
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115
118
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signing_key:
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116
119
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specification_version: 3
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117
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-
summary:
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120
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+
summary: A framework for running Scientific experiments.
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118
121
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test_files:
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119
122
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- test/test_base.rb
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120
123
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- test/test_config.rb
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data/lib/experiment/stats.rb
DELETED
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@@ -1,43 +0,0 @@
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1
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-
class Stats
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2
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-
class << self
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3
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-
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4
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-
def sum(ar, &block)
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5
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ar.reduce(0.0) {|asum, a| (block_given? ? yield(a) : a) + asum}
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6
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-
end
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7
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-
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8
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-
def variance(ar)
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9
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-
v = sum(ar) {|x| (mean(ar) - x)**2.0 }
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10
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v/(ar.count - 1.0)
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11
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-
end
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12
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-
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13
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-
def standard_deviation(ar)
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14
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-
Math.sqrt(variance(ar))
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15
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-
end
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16
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-
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17
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-
def z_scores(ar)
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18
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ar.map {|x| z_score(ar, x)}
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19
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-
end
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20
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-
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-
def z_score(ar, x)
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22
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(x - mean(ar)) / standard_deviation(ar)
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23
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-
end
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24
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-
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25
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-
def range(ar)
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26
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-
ar.max - ar.min
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27
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-
end
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28
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-
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29
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-
def mean(ar)
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30
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-
sum(ar) / ar.count
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31
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-
end
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32
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-
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33
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-
def median(ar)
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34
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-
a = ar.sort
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35
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-
if ar.count.odd?
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36
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a[(ar.count-1)/2]
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37
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else
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38
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(a[ar.count/2 - 1] + a[ar.count/2]) / 2.0
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39
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-
end
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40
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-
end
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41
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-
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42
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-
end
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43
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-
end
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