evolvable 1.0.2 → 1.1.0

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Files changed (43) hide show
  1. checksums.yaml +4 -4
  2. data/.yardopts +4 -0
  3. data/CHANGELOG.md +37 -0
  4. data/Gemfile +3 -0
  5. data/Gemfile.lock +38 -2
  6. data/README.md +227 -290
  7. data/README_YARD.md +237 -0
  8. data/bin/console +18 -5
  9. data/evolvable.gemspec +2 -0
  10. data/examples/ascii_art.rb +62 -0
  11. data/examples/ascii_gene.rb +9 -0
  12. data/examples/hello_world.rb +91 -0
  13. data/examples/images/diagram.png +0 -0
  14. data/examples/stickman.rb +77 -0
  15. data/exe/hello +16 -0
  16. data/lib/evolvable/count_gene.rb +42 -0
  17. data/lib/evolvable/equalize_goal.rb +29 -0
  18. data/lib/evolvable/evaluation.rb +29 -6
  19. data/lib/evolvable/evolution.rb +38 -6
  20. data/lib/evolvable/gene.rb +47 -5
  21. data/lib/evolvable/gene_combination.rb +69 -0
  22. data/lib/evolvable/genome.rb +86 -0
  23. data/lib/evolvable/goal.rb +36 -3
  24. data/lib/evolvable/maximize_goal.rb +30 -0
  25. data/lib/evolvable/minimize_goal.rb +29 -0
  26. data/lib/evolvable/mutation.rb +66 -14
  27. data/lib/evolvable/point_crossover.rb +33 -19
  28. data/lib/evolvable/population.rb +171 -31
  29. data/lib/evolvable/rigid_count_gene.rb +17 -0
  30. data/lib/evolvable/search_space.rb +181 -0
  31. data/lib/evolvable/selection.rb +28 -1
  32. data/lib/evolvable/serializer.rb +21 -0
  33. data/lib/evolvable/uniform_crossover.rb +28 -8
  34. data/lib/evolvable/version.rb +1 -1
  35. data/lib/evolvable.rb +191 -31
  36. metadata +49 -10
  37. data/examples/evolvable_string/char_gene.rb +0 -9
  38. data/examples/evolvable_string.rb +0 -32
  39. data/lib/evolvable/gene_crossover.rb +0 -28
  40. data/lib/evolvable/gene_space.rb +0 -40
  41. data/lib/evolvable/goal/equalize.rb +0 -19
  42. data/lib/evolvable/goal/maximize.rb +0 -19
  43. data/lib/evolvable/goal/minimize.rb +0 -19
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data/.yardopts ADDED
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+ --plugin readme
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+ --markup markdown
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+
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+ lib/**/*.rb
data/CHANGELOG.md CHANGED
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  ## Unreleased
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+ Features
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+ * Updated documentation.
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+ * Genome abstraction for genes. [69afd7c](https://github.com/mattruzicka/evolvable/commit/69afd7c957cbf89cc03b4f3f0ba967bf571c34c5)
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+ * Built-in support for count genes. [69afd7c](https://github.com/mattruzicka/evolvable/commit/69afd7c957cbf89cc03b4f3f0ba967bf571c34c5)
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+ * Add serializer for dumping and loading for population and genogenome objects [9d2a42a](https://github.com/mattruzicka/evolvable/commit/9d2a42a29103e1525b3c5471578ee97baeb6e8c6)
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+ * Keep previous generation parents for generating evolvables for the current generation whenever [856ac3a](https://github.com/mattruzicka/evolvable/commit/856ac3a778106d34221ce8ce8ae14b963877dc76)
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+ * Add #new_evolvables methods to Evolvable Selection, Crossover, and Mutation for acting on evolvables [856ac3a](https://github.com/mattruzicka/evolvable/commit/856ac3a778106d34221ce8ce8ae14b963877dc76)
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+ * Add EvolvablePopulation#reset_evolvables [b61cccb](https://github.com/mattruzicka/evolvable/commit/b61cccbee8ac8cc9f00496e5461131bb796af974)
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+ * Improve gene class lookup. Suppose you have an evolvable Dog class with a Dog::TailGene class. Now you can just pass 'TailGene' as the 'type' in your gene space definition [079dcef](https://github.com/mattruzicka/evolvable/commit/079dcef000e57553db8c6e5b89207d2d8e5c9890)
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+ * Allow Evolvable.search_space to return a hash, array (when only one gene type), or array of arrays [be56c9c](https://github.com/mattruzicka/evolvable/commit/be56c9cc73c7202abc4588cb20c340d1e49498ed)
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+ * Add Evolvable.search_spaces method which can be defined instead of or in addition to Evolvable.search_space, as an array of search space definitions (configs or Evolvable::SearchSpace objects) [a3c3896](https://github.com/mattruzicka/evolvable/commit/a3c3896d8b1799b7fac6143812a5ef630f716d85)
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+ * Add ability to inititalize evaluation, selection, combination, and mutation objects with a hash of parameters or object. [7c8fd58](https://github.com/mattruzicka/evolvable/commit/7c8fd586ec882f35e5ce35c5bc6a28982e4d0640)
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+ * Add the following delegated methods to Evolvable::Population to change the default evolutionary parameters [ffb9998](https://github.com/mattruzicka/evolvable/commit/ffb9998b09f02fa6759322c324b2f448fd3af223)
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+
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+ ```
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+ selection_size
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+ selection_size=
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+ mutation_rate
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+ mutation_rate=
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+ mutation_probability
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+ mutation_probability=
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+ ```
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+
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+
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+ Changes
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+ * Renamed Goal classes. The old, namespaced goal classes will be removed in version 2.0 [a3fb191](https://github.com/mattruzicka/evolvable/commit/a3fb1915230cc297e545d873a80f0324bca5833d)
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+ * Renamed Evolvable#population_index to generation_index. The The population_index method will be removed in version 2.0 [e0251f7](https://github.com/mattruzicka/evolvable/commit/e0251f7c51818c30986d5a9a2b44f3834107ec55)
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+ * Renamed evolvable_class keyword arg in Evolvable::Population#initialize to evolvable_type and suport strings and classes as arguments. Passing evolvable_class is deprecated and will be removed in version 2.0 and at that time the evolvable_tyoe keyword arg will be required [1491f4b](https://github.com/mattruzicka/evolvable/commit/1491f4b6f5bb615ae17e749922a852edce48072b)
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+ * Renamed Evolvable::Population#new_instance to #new_evolvable + use the previous generation's parents to generate a new instance, if there is one. Otherwise, it continues to randomly intitialize the instances from the defined gene space.
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+ * Renamed Evolvable#new_instance to #new_evolvable, .initialize_instance to .initialize_evolvable, and #initialize_instance to #after_initialize.
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+ * Renamed "instance" and "instances" to "evolvable" and "evolvables" across the code base and API.
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+ * Renamed Evolvable::GeneSpace to Evolvable::SearchSpace. Using Evolvable::GeneSpace and Evolvable.gene_space is deprecated and support will be removed in version 2.0 [837322a](https://github.com/mattruzicka/evolvable/commit/837322a66c87d6b3fdf992c1b6c7e1b2fb920fe7)
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+ * Renamed Evolution#crossover to Evolution#combination. Using Evolution#crossover is deprecated and support will be removed in version 2.0 [7fad505](https://github.com/mattruzicka/evolvable/commit/7fad505a6dbc679412d5c0565d64791a6edad6b7)
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+ * Renamed Population#crossover, crossover= to combination [d2190c5](https://github.com/mattruzicka/evolvable/commit/d2190c5b32584a95e25c40a30b685e634a1b6b7f)
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+ * Renamed Gene.crossover to Gene.combine. Gene.crossover is deprecated and support will be removedin version 2.0 [ed2190c5](https://github.com/mattruzicka/evolvable/commit/ed2190c5b32584a95e25c40a30b685e634a1b6b7f)
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+
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+
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  ## 1.0.2 - 2021-04-04
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  Features
data/Gemfile CHANGED
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  source 'https://rubygems.org'
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  gemspec
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+
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+ gem 'byebug'
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+ gem 'readme_yard', path: '/Users/matt/Code/readme_yard'
data/Gemfile.lock CHANGED
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  PATH
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  remote: .
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  specs:
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- evolvable (1.0.1)
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+ evolvable (1.1.0)
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+
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+ PATH
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+ remote: /Users/matt/Code/readme_yard
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+ specs:
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+ readme_yard (0.2.0)
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+ tty-markdown (~> 0.7)
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+ yard-readme (~> 0.3)
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  GEM
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  remote: https://rubygems.org/
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  specs:
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+ byebug (11.1.3)
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+ kramdown (2.3.1)
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+ rexml
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+ pastel (0.8.0)
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+ tty-color (~> 0.5)
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+ rexml (3.2.5)
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+ rouge (3.26.0)
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+ strings (0.2.1)
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+ strings-ansi (~> 0.2)
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+ unicode-display_width (>= 1.5, < 3.0)
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+ unicode_utils (~> 1.4)
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+ strings-ansi (0.2.0)
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+ tty-color (0.6.0)
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+ tty-markdown (0.7.0)
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+ kramdown (>= 1.16.2, < 3.0)
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+ pastel (~> 0.8)
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+ rouge (~> 3.14)
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+ strings (~> 0.2.0)
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+ tty-color (~> 0.5)
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+ tty-screen (~> 0.8)
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+ tty-screen (0.8.1)
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+ unicode-display_width (2.0.0)
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+ unicode_utils (1.4.0)
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+ yard (0.9.26)
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+ yard-readme (0.3.0)
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+ yard (~> 0.9.26)
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  PLATFORMS
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  ruby
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  DEPENDENCIES
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  bundler (~> 2.0)
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+ byebug
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  evolvable!
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+ readme_yard!
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+ yard
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  BUNDLED WITH
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- 2.2.0
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+ 2.2.15