evilution 0.27.0 → 0.29.0

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data/.rubocop_todo.yml

@@ -3,5 +3,4 @@
 
 Metrics/AbcSize:
   Exclude:
-    - "lib/evilution/config.rb"
     - "lib/evilution/runner.rb"

data/CHANGELOG.md

@@ -1,5 +1,44 @@
 # Changelog
 
+## [0.29.0] - 2026-05-06
+
+### Changed
+
+- **Internal codebase hygiene sweep — `Metrics/AbcSize` ceiling tightened from `25` → `17`** — every method exceeding the new threshold was refactored via pure extract-method (no behavior change). ~48 sites across `lib/evilution/{ast,cli,compare,config,disable_comment,integration,mcp,mutation,mutator,parallel,reporter,runner,session,spec_ast_cache}` plus supporting `scripts/` utilities. No public API, CLI flag, or output changes; mutation operators and report emission are bit-identical. The upper bound on per-method ABC is now strictly enforced repo-wide — only `lib/evilution/runner.rb` remains in `.rubocop_todo.yml` (#371, PR #1160 + per-file sub-PRs)
+- **Tuple-return methods across the runner pipeline migrated to named `Data.define` value objects** — internal-only refactor introducing typed return shapes for `Runner::MutationExecutor#call` (→`ExecutionResult`), `Runner::MutationPlanner#call` (→`Plan` plus internal `GenerationResult` / `DisabledFilterResult` / `SigFilterResult` / `EquivalentFilterResult`), `Parallel::WorkQueue` outputs, `Cache#partition` (→`Partition`), `Config.normalize_limit` (→`LimitResult`), `Mutation::Slicer.collect_chain` (→`Chain`), `slice_affected_lines` (→`AffectedSlices`), `CLI::Parser::FilesAndRanges` (→`ParsedPaths`), and assorted CLI command helpers. Improves call-site readability without affecting external behavior (#948, PR #1094; #949, PR #1095; #950, PR #1096; #951, PR #1097; #952, PR #1098; #953, PR #1099; #954, PR #1100; #955, PR #1101; #956, PR #1102)
+
+## [0.28.0] - 2026-05-03
+
+### Added
+
+- **Operator profiles: `default` (current 72-operator set) and `strict` (adds aggressive truthiness mutators)** — pre-merge audits can opt into a more sensitive operator mix. The `strict` profile registers `PredicateToNil`, which replaces every `x.predicate?` call with `nil` to surface tests that only assert truthiness rather than exact return values. Wired through CLI (`--profile=strict`, `--strict` shortcut), `.evilution.yml` (`profile: strict`), and a new `Evilution::Mutator::Registry.for_profile(:default | :strict)` factory. `default` is unchanged, so existing CI runs are not affected (#920, PR #926)
+- **Multi-file batch invocation documented** — `evilution path/a.rb path/b.rb path/c.rb` runs every file in a single Runner invocation so the framework (Rails, Sorbet, etc.) and the `preload` chain load **once** in the parent process. With `--isolation=fork` (default for Rails projects under `auto`), every per-mutation fork branches off the warmed parent — materially faster than `for f in ...; do bundle exec evilution run "$f"; done`. README now has a "5a. Multi-file batch scan" workflow section and an end-to-end runner spec covers two positional file paths; session save/load preserves per-file paths in `survived[].file` (#922, PR #927)
+
+### Fixed
+
+- **`Compare::Normalizer` mis-classified Mutant payload lines whose mutated source started with `--` or `++` as unified-diff headers** — pre-existing bug in `extract_from_mutant_diff` that would, for example, drop a removed line `--flag` (emitted as `---flag` in the diff). The new `DiffExtractor::Mutant` requires a trailing space after `---`/`+++` to match a header, preserving real payload. Equivalent Evilution/Mutant mutations on such lines now hash identically and `compare` no longer reports false additions/removals (#917, PR #934)
+
+### Changed
+
+- **Internal `Evilution::Compare::Fingerprint` SOLID refactor** — module-function form replaced with a class taking injectable `(extractor:, normalizer:)` collaborators and a `#call(diff:, file_path:, line:)` interface. Diff parsing extracted into `Evilution::Compare::DiffExtractor::{Evilution,Mutant}` strategy classes (one per format, common duck-typed interface), enabling open/closed extension for future tools without touching the orchestrator. `Compare::Normalizer` constructs both fingerprints once and reuses them across records (#917, PR #934)
+- **`Evilution::Mutation` migrated to value-object composition** — sources, slice, parse status now Data.define-backed value objects (#822, PR #907)
+- **`Evilution::Result::MutationResult` encapsulates memory and error state in dedicated Data.define value objects** — `MemoryStats` and `ErrorInfo` instead of flat positional fields (#823, PR #907)
+- **`Reporter::Suggestion` registry/templates and the RSpec/Minitest template builders unified** — single `build` entrypoint per format (#824, PR #908; #849, PR #905; #850, PR #904)
+- **`Reporter::HTML` namespace inlined into `report.rb`** — separate `namespace.rb` removed, autoload pattern adopted for sub-templates (#826, PR #909)
+- **`Compare::LineNormalizer` extracted into its own class** — whitespace collapse separated from fingerprint orchestration (#829, PR #832)
+- **`Evilution::Config` attribute assignment migrated to a transformation map** — single source of truth for type coercion across simple attributes (#830)
+- **`Runner` `require` chain consolidated** — sub-component loading now centralized; circular-require pitfalls in `MutationExecutor` resolved with `Module#autoload` for child strategy/neutralizer files (#831)
+- **Process cleanup helpers extracted into `Evilution::ProcessCleanup`** — `safe_kill(sig, pid)` and `safe_wait(pid)` shared by `Baseline`, `Isolation::Fork`, and `WorkQueue::Worker`, replacing scattered inline `rescue` modifiers swallowing `Errno::ESRCH`/`ECHILD` (#838)
+- **`ProgressStreamer` and `Loop` error handling tightened** — generic `StandardError` rescues replaced with specific `Errno::EPIPE`/`Errno::EBADF`/etc.; once-only warning suppression added so a flood of failures cannot drown stderr (#827, #840)
+- **Crash detector predicate methods renamed** — `has_*?` → `*?` per Ruby/RSpec conventions (`have_X` matcher calls `has_X?`; the renamed methods are still picked up by `be_X` matchers used in specs) (#839)
+- **Rubocop hygiene sweep across 6 sites** — `Style/RescueModifier`, `Lint/UnusedMethodArgument`, `Lint/SuppressedException` (3 instances), `Security/Eval`, and `Security/MarshalLoad` (3 instances) inline disable comments removed in favor of either narrowed code, explanatory rescue-body comments, or main-`.rubocop.yml` per-file Excludes documented with the underlying trust boundary (#832, #833, #834, #835, #836, #837)
+
+### Documentation
+
+- **README "Operator Profiles" subsection** — explains the `default` vs `strict` profiles, how to opt in (CLI, config, shortcut), and what `strict` adds today (#920, PR #926)
+- **README "5a. Multi-file batch scan" workflow** — documents Rails-loads-once amortisation and qualifies the speed claim by isolation mode (`fork` vs `in_process`) (#922, PR #927)
+- **`.evilution.yml` template gained a `profile:` block** — generated by `evilution init` (#920, PR #926)
+
 ## [0.27.0] - 2026-04-26
 
 ### Added

data/README.md

@@ -118,6 +118,17 @@ The shorter alias `evil` ships alongside `evilution` and accepts identical argum
 | `--fallback-full-suite`      | Boolean | false        | When no matching spec/test resolves for a mutation, run the whole test suite instead of marking it `:unresolved` and skipping. |
 | `--baseline-session PATH`    | String  | _(none)_     | Saved session file for HTML report comparison.     |
 | `-e CODE`, `--eval CODE`     | String  | _(none)_     | Inline Ruby code for `util mutation` command.      |
+| `--profile NAME`             | String  | `default`    | Operator profile: `default` or `strict`. `strict` adds aggressive truthiness mutators (e.g. replaces `x.predicate?` with `nil`) intended for pre-merge audits. |
+| `--strict`                   | Boolean | false        | Shortcut for `--profile=strict`.                    |
+
+### Operator Profiles
+
+Two profiles ship out of the box:
+
+- **`default`** — the 72 stable operators registered in `Mutator::Registry.default`. Suitable for everyday CI runs; balances coverage signal against survivor noise.
+- **`strict`** — adds extra truthiness mutators on top of `default`. Currently `PredicateToNil` (replaces every `x.predicate?` call with `nil` to surface tests that only assert truthiness rather than exact return values). Use for pre-merge audits where you want maximum sensitivity at the cost of more survivors.
+
+Set via `--profile=strict`, the `--strict` shortcut, or `profile: strict` in `.evilution.yml`.
 
 ### Exit Codes
 
@@ -484,6 +495,14 @@ bundle exec evilution run lib/specific_file.rb --format json
 
 Use when you know which file was modified and want to verify its test coverage.
 
+### 5a. Multi-file batch scan
+
+```bash
+bundle exec evilution run lib/models/user.rb lib/models/account.rb lib/models/order.rb
+```
+
+Pass multiple file paths on a single invocation to amortise startup cost. The framework (Rails, Sorbet, etc.) and the `preload` chain (`spec/rails_helper.rb` → `spec/spec_helper.rb` → `test/test_helper.rb`) load **once** in the parent process. When `--isolation=fork` is selected (the default `--isolation=auto` resolves to `fork` on Rails projects), every subsequent mutation across all files forks from that warmed parent — materially faster than scripting a `for f in ...; do bundle exec evilution run "$f"; done` loop, which pays the bootstrap per file. With `--isolation=in_process` (default for non-Rails projects under `auto`), there is no per-mutation fork, but the parent-process boot still runs once instead of N times. Per-file paths and line numbers are preserved in the report (`survived[].file`, HTML grouping by source file).
+
 ### 6. Fixing surviving mutants
 
 For each entry in `survived[]`:

data/lib/evilution/ast/constant_names.rb

@@ -17,18 +17,35 @@ class Evilution::AST::ConstantNames
   private
 
   def collect(node, nesting = [])
-    names = []
     case node
-    when Prism::ModuleNode, Prism::ClassNode
-      const = node.constant_path.full_name
-      qualified = nesting.any? && !const.include?("::") ? "#{nesting.join("::")}::#{const}" : const
-      names << qualified
-      names.concat(collect(node.body, nesting + [const])) if node.body
-    when Prism::ProgramNode
-      names.concat(collect(node.statements, nesting)) if node.statements
-    when Prism::StatementsNode
-      node.body.each { |child| names.concat(collect(child, nesting)) }
+    when Prism::ModuleNode, Prism::ClassNode then collect_class(node, nesting)
+    when Prism::ProgramNode then collect_program(node, nesting)
+    when Prism::StatementsNode then collect_statements(node, nesting)
+    else []
     end
-    names
+  end
+
+  def collect_class(node, nesting)
+    const = node.constant_path.full_name
+    qualified = qualify(const, nesting)
+    return [qualified] if node.body.nil?
+
+    [qualified] + collect(node.body, nesting + [const])
+  end
+
+  def collect_program(node, nesting)
+    return [] if node.statements.nil?
+
+    collect(node.statements, nesting)
+  end
+
+  def collect_statements(node, nesting)
+    node.body.flat_map { |child| collect(child, nesting) }
+  end
+
+  def qualify(const, nesting)
+    return const if nesting.empty? || const.include?("::")
+
+    "#{nesting.join("::")}::#{const}"
   end
 end

data/lib/evilution/ast/pattern/parser.rb

@@ -75,24 +75,36 @@ class Evilution::AST::Pattern::Parser
 
   def parse_value
     skip_whitespace
+    parse_negation || parse_deep_wildcard || parse_single_wildcard || parse_any_node || parse_value_or_nested
+  end
 
-    if current_char == "!"
-      advance(1)
-      skip_whitespace
-      inner = parse_value
-      Evilution::AST::Pattern::NegationMatcher.new(inner)
-    elsif current_char == "*" && !peek_string("**")
-      advance(1)
-      Evilution::AST::Pattern::WildcardValueMatcher.new
-    elsif peek_string("**")
-      advance(2)
-      Evilution::AST::Pattern::DeepWildcardMatcher.new
-    elsif current_char == "_" && !identifier_continues?(1)
-      advance(1)
-      Evilution::AST::Pattern::AnyNodeMatcher.new
-    else
-      parse_value_or_nested
-    end
+  def parse_negation
+    return nil unless current_char == "!"
+
+    advance(1)
+    skip_whitespace
+    Evilution::AST::Pattern::NegationMatcher.new(parse_value)
+  end
+
+  def parse_deep_wildcard
+    return nil unless peek_string("**")
+
+    advance(2)
+    Evilution::AST::Pattern::DeepWildcardMatcher.new
+  end
+
+  def parse_single_wildcard
+    return nil unless current_char == "*"
+
+    advance(1)
+    Evilution::AST::Pattern::WildcardValueMatcher.new
+  end
+
+  def parse_any_node
+    return nil unless current_char == "_" && !identifier_continues?(1)
+
+    advance(1)
+    Evilution::AST::Pattern::AnyNodeMatcher.new
   end
 
   def parse_value_or_nested

data/lib/evilution/baseline.rb

@@ -1,6 +1,7 @@
 # frozen_string_literal: true
 
 require_relative "spec_resolver"
+require_relative "process_cleanup"
 
 class Evilution::Baseline
   Result = Struct.new(:failed_spec_files, :duration) do
@@ -72,7 +73,7 @@ class Evilution::Baseline
       Process.wait(pid)
       return false if data.empty?
 
-      result = Marshal.load(data) # rubocop:disable Security/MarshalLoad
+      result = Marshal.load(data)
       result[:passed]
     else
       terminate_child(pid)
@@ -81,7 +82,7 @@ class Evilution::Baseline
   end
 
   def terminate_child(pid)
-    Process.kill("TERM", pid) rescue nil # rubocop:disable Style/RescueModifier
+    Evilution::ProcessCleanup.safe_kill("TERM", pid)
     _, status = Process.waitpid2(pid, Process::WNOHANG)
     return if status
 
@@ -89,8 +90,8 @@ class Evilution::Baseline
     _, status = Process.waitpid2(pid, Process::WNOHANG)
     return if status
 
-    Process.kill("KILL", pid) rescue nil # rubocop:disable Style/RescueModifier
-    Process.wait(pid) rescue nil # rubocop:disable Style/RescueModifier
+    Evilution::ProcessCleanup.safe_kill("KILL", pid)
+    Evilution::ProcessCleanup.safe_wait(pid)
   end
 
   private

data/lib/evilution/cli/commands/session_diff.rb

@@ -14,10 +14,7 @@ class Evilution::CLI::Commands::SessionDiff < Evilution::CLI::Command
   def perform
     raise Evilution::ConfigError, "two session file paths required" unless @files.length == 2
 
-    store = Evilution::Session::Store.new
-    base_data = store.load(@files[0])
-    head_data = store.load(@files[1])
-    result = Evilution::Session::Diff.new.call(base_data, head_data)
+    result = compute_diff(@files)
     Evilution::CLI::Printers::SessionDiff.new(result, format: @options[:format]).render(@stdout)
     0
   rescue ::JSON::ParserError => e
@@ -25,6 +22,11 @@ class Evilution::CLI::Commands::SessionDiff < Evilution::CLI::Command
   rescue SystemCallError => e
     raise Evilution::Error, e.message
   end
+
+  def compute_diff(files)
+    store = Evilution::Session::Store.new
+    Evilution::Session::Diff.new.call(store.load(files[0]), store.load(files[1]))
+  end
 end
 
 Evilution::CLI::Dispatcher.register(:session_diff, Evilution::CLI::Commands::SessionDiff)

data/lib/evilution/cli/commands/subjects.rb

@@ -9,6 +9,9 @@ require_relative "../../runner"
 require_relative "../../mutator"
 
 class Evilution::CLI::Commands::Subjects < Evilution::CLI::Command
+  EntriesResult = Data.define(:entries, :total)
+  private_constant :EntriesResult
+
   private
 
   def perform
@@ -23,8 +26,8 @@ class Evilution::CLI::Commands::Subjects < Evilution::CLI::Command
       return 0
     end
 
-    entries, total = collect_entries(subjects, config)
-    Evilution::CLI::Printers::Subjects.new(entries, total_mutations: total).render(@stdout)
+    result = collect_entries(subjects, config)
+    Evilution::CLI::Printers::Subjects.new(result.entries, total_mutations: result.total).render(@stdout)
     0
   end
 
@@ -43,7 +46,7 @@ class Evilution::CLI::Commands::Subjects < Evilution::CLI::Command
       subj.release_node!
     end
 
-    [entries, total]
+    EntriesResult.new(entries: entries, total: total)
   end
 end
 

data/lib/evilution/cli/commands/util_mutation.rb

@@ -11,11 +11,14 @@ require_relative "../../mutator/registry"
 require_relative "../../ast/parser"
 
 class Evilution::CLI::Commands::UtilMutation < Evilution::CLI::Command
+  SourceInput = Data.define(:source, :file_path)
+  private_constant :SourceInput
+
   private
 
   def perform
-    source, file_path = resolve_util_mutation_source
-    subjects = parse_source_to_subjects(source, file_path)
+    input = resolve_util_mutation_source
+    subjects = parse_source_to_subjects(input.source, input.file_path)
     config = Evilution::Config.new(**@options)
     registry = Evilution::Mutator::Registry.default
     operator_options = build_operator_options(config)
@@ -33,24 +36,26 @@ class Evilution::CLI::Commands::UtilMutation < Evilution::CLI::Command
   end
 
   def resolve_util_mutation_source
-    if @options[:eval]
-      tmpfile = Tempfile.new(["evilution_eval", ".rb"])
-      tmpfile.write(@options[:eval])
-      tmpfile.flush
-      @util_tmpfile = tmpfile
-      [@options[:eval], tmpfile.path]
-    elsif @files.first
-      path = @files.first
-      raise Evilution::Error, "file not found: #{path}" unless File.exist?(path)
+    return build_eval_source(@options[:eval]) if @options[:eval]
+    return build_file_source(@files.first) if @files.first
 
-      begin
-        [File.read(path), path]
-      rescue SystemCallError => e
-        raise Evilution::Error, e.message
-      end
-    else
-      raise Evilution::Error, "source required: use -e 'code' or provide a file path"
-    end
+    raise Evilution::Error, "source required: use -e 'code' or provide a file path"
+  end
+
+  def build_eval_source(code)
+    tmpfile = Tempfile.new(["evilution_eval", ".rb"])
+    tmpfile.write(code)
+    tmpfile.flush
+    @util_tmpfile = tmpfile
+    SourceInput.new(source: code, file_path: tmpfile.path)
+  end
+
+  def build_file_source(path)
+    raise Evilution::Error, "file not found: #{path}" unless File.exist?(path)
+
+    SourceInput.new(source: File.read(path), file_path: path)
+  rescue SystemCallError => e
+    raise Evilution::Error, e.message
   end
 
   def parse_source_to_subjects(source, file_label)

data/lib/evilution/cli/parser/command_extractor.rb

@@ -20,6 +20,13 @@ class Evilution::CLI::Parser::CommandExtractor
   ENVIRONMENT_SUBCOMMANDS = { "show" => :environment_show }.freeze
   UTIL_SUBCOMMANDS = { "mutation" => :util_mutation }.freeze
 
+  SUBCOMMAND_FAMILIES = {
+    "session" => [SESSION_SUBCOMMANDS, "session", "list, show, diff, gc"],
+    "tests" => [TESTS_SUBCOMMANDS, "tests", "list"],
+    "environment" => [ENVIRONMENT_SUBCOMMANDS, "environment", "show"],
+    "util" => [UTIL_SUBCOMMANDS, "util", "mutation"]
+  }.freeze
+
   Result = Struct.new(:command, :remaining_argv, :parse_error)
 
   def self.call(argv)
@@ -46,18 +53,9 @@ class Evilution::CLI::Parser::CommandExtractor
       @argv.shift
     elsif first == "run"
       @argv.shift
-    elsif first == "session"
-      @argv.shift
-      extract_subcommand(SESSION_SUBCOMMANDS, "session", "list, show, diff, gc")
-    elsif first == "tests"
-      @argv.shift
-      extract_subcommand(TESTS_SUBCOMMANDS, "tests", "list")
-    elsif first == "environment"
-      @argv.shift
-      extract_subcommand(ENVIRONMENT_SUBCOMMANDS, "environment", "show")
-    elsif first == "util"
+    elsif SUBCOMMAND_FAMILIES.key?(first)
       @argv.shift
-      extract_subcommand(UTIL_SUBCOMMANDS, "util", "mutation")
+      extract_subcommand(*SUBCOMMAND_FAMILIES[first])
     end
   end
 

data/lib/evilution/cli/parser/file_args.rb

@@ -1,6 +1,8 @@
 # frozen_string_literal: true
 
 module Evilution::CLI::Parser::FileArgs
+  ParsedPaths = Data.define(:files, :ranges)
+
   module_function
 
   def parse(raw_args)
@@ -15,7 +17,7 @@ module Evilution::CLI::Parser::FileArgs
       ranges[file] = parse_line_range(range_str)
     end
 
-    [files, ranges]
+    ParsedPaths.new(files: files, ranges: ranges)
   end
 
   def expand_spec_dir(dir)

data/lib/evilution/cli/parser/options_builder.rb

@@ -21,6 +21,9 @@ class Evilution::CLI::Parser::OptionsBuilder
       add_core_options(opts)
       add_filter_options(opts)
       add_flag_options(opts)
+      add_runner_mode_options(opts)
+      add_output_options(opts)
+      add_profile_options(opts)
       add_extra_flag_options(opts)
       add_session_options(opts)
       add_compare_options(opts)
@@ -46,11 +49,19 @@ class Evilution::CLI::Parser::OptionsBuilder
   end
 
   def add_filter_options(opts)
+    add_spec_filter_options(opts)
+    add_targeting_options(opts)
+  end
+
+  def add_spec_filter_options(opts)
     opts.on("--min-score FLOAT", Float, "Minimum mutation score to pass") { |s| @options[:min_score] = s }
     opts.on("--spec FILES", Array, "Spec files to run (comma-separated)") { |f| @options[:spec_files] = f }
     opts.on("--spec-dir DIR", "Include all specs in DIR") { |d| expand_spec_dir(d) }
     opts.on("--spec-pattern GLOB",
             "Restrict resolved spec candidates to files matching GLOB") { |p| @options[:spec_pattern] = p }
+  end
+
+  def add_targeting_options(opts)
     opts.on("--no-example-targeting",
             "Disable per-mutation example targeting (run all examples in resolved spec files)") do
       @options[:example_targeting] = false
@@ -75,13 +86,19 @@ class Evilution::CLI::Parser::OptionsBuilder
             "Use --no-incremental to override `incremental: true` from the config file for one run.") do |v|
       @options[:incremental] = v
     end
+    opts.on("--stdin", "Read target file paths from stdin (one per line)") { @options[:stdin] = true }
+  end
+
+  def add_runner_mode_options(opts)
     opts.on("--integration NAME", "Test integration: rspec, minitest (default: rspec)") { |i| @options[:integration] = i }
     opts.on("--isolation STRATEGY", "Isolation: auto, fork, in_process (default: auto)") { |s| @options[:isolation] = s }
     opts.on("--preload FILE", "Preload FILE in the parent process before forking " \
                               "(default: auto-detect spec/rails_helper.rb -> spec/spec_helper.rb -> " \
                               "test/test_helper.rb for Rails projects)") { |f| @options[:preload] = f }
     opts.on("--no-preload", "Disable parent-process preload even for Rails projects") { @options[:preload] = false }
-    opts.on("--stdin", "Read target file paths from stdin (one per line)") { @options[:stdin] = true }
+  end
+
+  def add_output_options(opts)
     opts.on("--suggest-tests", "Generate concrete test code in suggestions (RSpec or Minitest)") { @options[:suggest_tests] = true }
     opts.on("--no-progress", "Disable progress bar") { @options[:progress] = false }
     opts.on("--quiet-children",
@@ -95,7 +112,19 @@ class Evilution::CLI::Parser::OptionsBuilder
     end
   end
 
+  def add_profile_options(opts)
+    opts.on("--profile NAME", "Operator profile: default, strict (default: default). " \
+                              "strict adds aggressive truthiness mutators for pre-merge audits.") { |p| @options[:profile] = p }
+    opts.on("--strict", "Shortcut for --profile=strict") { @options[:profile] = "strict" }
+  end
+
   def add_extra_flag_options(opts)
+    add_mutation_behavior_options(opts)
+    add_session_persistence_options(opts)
+    add_misc_extra_options(opts)
+  end
+
+  def add_mutation_behavior_options(opts)
     opts.on("--skip-heredoc-literals", "Skip all string literal mutations inside heredocs") { @options[:skip_heredoc_literals] = true }
     opts.on("--related-specs-heuristic", "Append related request/integration/feature/system specs for includes() mutations") do
       @options[:related_specs_heuristic] = true
@@ -105,8 +134,14 @@ class Evilution::CLI::Parser::OptionsBuilder
       @options[:fallback_to_full_suite] = true
     end
     opts.on("--show-disabled", "Report mutations skipped by # evilution:disable") { @options[:show_disabled] = true }
+  end
+
+  def add_session_persistence_options(opts)
     opts.on("--baseline-session PATH", "Compare against a baseline session in HTML report") { |p| @options[:baseline_session] = p }
     opts.on("--save-session", "Save session results to .evilution/results/") { @options[:save_session] = true }
+  end
+
+  def add_misc_extra_options(opts)
     opts.on("-e", "--eval CODE", "Evaluate code snippet (for util mutation)") { |c| @options[:eval] = c }
     opts.on("-v", "--verbose", "Verbose output") { @options[:verbose] = true }
     opts.on("-q", "--quiet", "Suppress output") { @options[:quiet] = true }

data/lib/evilution/cli/parser/stdin_reader.rb

@@ -22,7 +22,7 @@ class Evilution::CLI::Parser::StdinReader
       line = line.strip
       lines << line unless line.empty?
     end
-    files, ranges = Evilution::CLI::Parser::FileArgs.parse(lines)
-    Result.new(files, ranges, nil)
+    parsed_paths = Evilution::CLI::Parser::FileArgs.parse(lines)
+    Result.new(parsed_paths.files, parsed_paths.ranges, nil)
   end
 end