etna 0.1.18 → 0.1.23

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: b1e3987a14cd4cb5eb805c4573eb09a8a64a50c2e34e1c5ae011c8efb946ab3d
-  data.tar.gz: 611e0df9d6f931adc14442c99adad44ebf899c16695d033618c094704e538126
+  metadata.gz: 6ae7868eeaa6de2a8701602929e642d381ccab2115c71cb18c216a362217645c
+  data.tar.gz: 9183c39484f21c330f1c0e14f4c9e355e8302805f71dbdbb5889f1e3eeb58bb4
 SHA512:
-  metadata.gz: 93deb61017df46773b3449424589f7db51c65b4543c3203bf1a35fc2815bd6140bd04981e55413e0e91e47110b58d9f0a4d8f4566ab1bad99cd111e96d44bc76
-  data.tar.gz: bda7d6c202366ddb2c5805091758aa2e978ab9bffb9fd364fdd12235567169453a7dfd97fddaf2e9a468b1ce025effa9ae79c8c0e97d46a7cf7315482ba9872c
+  metadata.gz: 20ae9fdf11e4da6e000be9308e5c3f8b5309d219aa5820b4a855ee43b80d2f4c6bc7f33e52e1844ab3bfe02ee67968cbb91f53737a0a6515ba870b08dffe854e
+  data.tar.gz: a43573a1a801e9d4be0aee3390997b68507b6bdcb626fc185264eb8cb884b7e14d92a4485df5ec494527bd8609d761a7f7e1ca5c9064181789506e756f8d4157

data/bin/etna

@@ -9,55 +9,10 @@ require 'yaml'
 require_relative '../lib/etna'
 require_relative '../lib/commands'
 
-config = (
-         if File.exists?(EtnaApp.config_file_path)
-           YAML.load(File.read(EtnaApp.config_file_path))
-         else
-           {}
-         end).update({
-    production: {
-        docker: {
-            default_tag: 'latest',
-        },
-        magma: {
-            host: 'https://magma.ucsf.edu'
-        },
-        metis: {
-            host: 'https://metis.ucsf.edu',
-        },
-        janus: {
-            host: 'https://janus.ucsf.edu',
-        },
-        timur: {},
-        polyphemus: {},
-        auth_redirect: 'https://janus.ucsf.edu',
-        ignore_ssl: false,
-    },
-    stage: {
-        docker: {
-            default_tag: 'latest',
-        },
-        magma: {
-            host: 'https://magma-stage.ucsf.edu'
-        },
-        metis: {
-            host: 'https://metis-stage.ucsf.edu',
-        },
-        janus: {
-            host: 'https://janus-stage.ucsf.edu',
-        },
-        timur: {},
-        polyphemus: {},
-        auth_redirect: 'https://janus-stage.ucsf.edu',
-        ignore_ssl: true,
-    },
-})
-
-EtnaApp.instance.run_command(config, *ARGV) do |cmd, args|
-  if cmd.class.included_modules.include?(RequireConfirmation)
-    puts "Attempting to run #{cmd.program_name} in environment #{EtnaApp.instance.environment} with args #{args}"
-    StrongConfirmation.confirm
-  else
-    true
-  end
+config = if File.exists?(EtnaApp.config_file_path)
+  YAML.load(File.read(EtnaApp.config_file_path))
+else
+  {}
 end
+
+EtnaApp.instance.run_command(config, *ARGV)

data/etna.completion

@@ -23,30 +23,26 @@ return
 fi
 COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
-elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
-return
-elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
-all_flag_completion_names="${all_flag_completion_names//$1\ /}"
-a=$1
+elif [[ "$1" == "administrate" ]]; then
 shift
-if [[ "$string_flag_completion_names" =~ $a\  ]]; then
+all_flag_completion_names="$all_flag_completion_names  "
+string_flag_completion_names="$string_flag_completion_names  "
+while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
-a="${a//--/}"
-a="${a//-/_}"
-i="_completions_for_$a"
-all_completion_names="${!i}"
-COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+all_completion_names="help models project"
+all_completion_names="$all_completion_names $all_flag_completion_names"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
 fi
-shift
-fi
-elif [[ "$1" == "administrate" ]]; then
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+elif [[ "$1" == "help" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
-all_completion_names="help models project"
+all_completion_names=""
 all_completion_names="$all_completion_names $all_flag_completion_names"
 if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
@@ -70,12 +66,41 @@ return
 fi
 shift
 fi
-elif [[ "$1" == "help" ]]; then
+else
+return
+fi
+done
+return
+elif [[ "$1" == "models" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
+all_completion_names="apply_template attributes copy_template help"
+all_completion_names="$all_completion_names $all_flag_completion_names"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+elif [[ "$1" == "apply_template" ]]; then
+shift
+if [[ "$#" == "1" ]];  then
+all_completion_names="__project_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+all_flag_completion_names="$all_flag_completion_names --file --target-model "
+string_flag_completion_names="$string_flag_completion_names --file --target-model "
+declare _completions_for_file="__file__"
+declare _completions_for_target_model="__target_model__"
+while [[ "$#" != "0" ]]; do
+if [[ "$#" == "1" ]];  then
 all_completion_names=""
 all_completion_names="$all_completion_names $all_flag_completion_names"
 if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
@@ -105,40 +130,50 @@ return
 fi
 done
 return
-elif [[ "$1" == "models" ]]; then
+elif [[ "$1" == "attributes" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
-all_completion_names="apply_template attributes copy_template help"
+all_completion_names="create_file_linking_csv help load_table_from_csv update_from_csv"
 all_completion_names="$all_completion_names $all_flag_completion_names"
 if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
 fi
 COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
-elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
+elif [[ "$1" == "create_file_linking_csv" ]]; then
+shift
+if [[ "$#" == "1" ]];  then
+all_completion_names="__project_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
-elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
-all_flag_completion_names="${all_flag_completion_names//$1\ /}"
-a=$1
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
 shift
-if [[ "$string_flag_completion_names" =~ $a\  ]]; then
 if [[ "$#" == "1" ]];  then
-a="${a//--/}"
-a="${a//-/_}"
-i="_completions_for_$a"
-all_completion_names="${!i}"
+all_completion_names="__bucket_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
 COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
 fi
 shift
+if [[ "$#" == "1" ]];  then
+all_completion_names="__attribute_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
 fi
-elif [[ "$1" == "apply_template" ]]; then
 shift
 if [[ "$#" == "1" ]];  then
-all_completion_names="__project_name__"
+all_completion_names="__extension__"
 if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
 fi
@@ -146,10 +181,11 @@ COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
 fi
 shift
-all_flag_completion_names="$all_flag_completion_names --file --target-model "
-string_flag_completion_names="$string_flag_completion_names --file --target-model "
+all_flag_completion_names="$all_flag_completion_names --collection --file --regex --folder "
+string_flag_completion_names="$string_flag_completion_names --file --regex --folder "
 declare _completions_for_file="__file__"
-declare _completions_for_target_model="__target_model__"
+declare _completions_for_regex="__regex__"
+declare _completions_for_folder="__folder__"
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
 all_completion_names=""
@@ -181,13 +217,13 @@ return
 fi
 done
 return
-elif [[ "$1" == "attributes" ]]; then
+elif [[ "$1" == "help" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
-all_completion_names="help update_from_csv"
+all_completion_names=""
 all_completion_names="$all_completion_names $all_flag_completion_names"
 if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
 return
@@ -211,9 +247,41 @@ return
 fi
 shift
 fi
-elif [[ "$1" == "help" ]]; then
+else
+return
+fi
+done
+return
+elif [[ "$1" == "load_table_from_csv" ]]; then
 shift
-all_flag_completion_names="$all_flag_completion_names  "
+if [[ "$#" == "1" ]];  then
+all_completion_names="__project_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+if [[ "$#" == "1" ]];  then
+all_completion_names="__model_name__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+if [[ "$#" == "1" ]];  then
+all_completion_names="__file_path__"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+all_flag_completion_names="$all_flag_completion_names --execute "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
@@ -275,8 +343,9 @@ COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
 fi
 shift
-all_flag_completion_names="$all_flag_completion_names  "
-string_flag_completion_names="$string_flag_completion_names  "
+all_flag_completion_names="$all_flag_completion_names --json-values --hole-value "
+string_flag_completion_names="$string_flag_completion_names --hole-value "
+declare _completions_for_hole_value="__hole_value__"
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
 all_completion_names=""
@@ -308,6 +377,23 @@ return
 fi
 done
 return
+elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
+return
+elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
+all_flag_completion_names="${all_flag_completion_names//$1\ /}"
+a=$1
+shift
+if [[ "$string_flag_completion_names" =~ $a\  ]]; then
+if [[ "$#" == "1" ]];  then
+a="${a//--/}"
+a="${a//-/_}"
+i="_completions_for_$a"
+all_completion_names="${!i}"
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+fi
 else
 return
 fi
@@ -393,23 +479,6 @@ return
 fi
 done
 return
-else
-return
-fi
-done
-elif [[ "$1" == "project" ]]; then
-shift
-all_flag_completion_names="$all_flag_completion_names  "
-string_flag_completion_names="$string_flag_completion_names  "
-while [[ "$#" != "0" ]]; do
-if [[ "$#" == "1" ]];  then
-all_completion_names="create help"
-all_completion_names="$all_completion_names $all_flag_completion_names"
-if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
-return
-fi
-COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
-return
 elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
 return
 elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
@@ -427,6 +496,23 @@ return
 fi
 shift
 fi
+else
+return
+fi
+done
+elif [[ "$1" == "project" ]]; then
+shift
+all_flag_completion_names="$all_flag_completion_names  "
+string_flag_completion_names="$string_flag_completion_names  "
+while [[ "$#" != "0" ]]; do
+if [[ "$#" == "1" ]];  then
+all_completion_names="create help"
+all_completion_names="$all_completion_names $all_flag_completion_names"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
 elif [[ "$1" == "create" ]]; then
 shift
 if [[ "$#" == "1" ]];  then
@@ -515,27 +601,27 @@ return
 fi
 done
 return
-else
-return
-fi
-done
-else
+elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
 return
-fi
-done
-elif [[ "$1" == "config" ]]; then
+elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
+all_flag_completion_names="${all_flag_completion_names//$1\ /}"
+a=$1
 shift
-all_flag_completion_names="$all_flag_completion_names  "
-string_flag_completion_names="$string_flag_completion_names  "
-while [[ "$#" != "0" ]]; do
+if [[ "$string_flag_completion_names" =~ $a\  ]]; then
 if [[ "$#" == "1" ]];  then
-all_completion_names="help set show"
-all_completion_names="$all_completion_names $all_flag_completion_names"
-if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+a="${a//--/}"
+a="${a//-/_}"
+i="_completions_for_$a"
+all_completion_names="${!i}"
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
 fi
-COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+shift
+fi
+else
 return
+fi
+done
 elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
 return
 elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
@@ -553,6 +639,23 @@ return
 fi
 shift
 fi
+else
+return
+fi
+done
+elif [[ "$1" == "config" ]]; then
+shift
+all_flag_completion_names="$all_flag_completion_names  "
+string_flag_completion_names="$string_flag_completion_names  "
+while [[ "$#" != "0" ]]; do
+if [[ "$#" == "1" ]];  then
+all_completion_names="help set show"
+all_completion_names="$all_completion_names $all_flag_completion_names"
+if [[ -z "$(echo $all_completion_names | xargs)" ]]; then
+return
+fi
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
 elif [[ "$1" == "help" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
@@ -634,7 +737,7 @@ done
 return
 elif [[ "$1" == "show" ]]; then
 shift
-all_flag_completion_names="$all_flag_completion_names --all "
+all_flag_completion_names="$all_flag_completion_names  "
 string_flag_completion_names="$string_flag_completion_names  "
 while [[ "$#" != "0" ]]; do
 if [[ "$#" == "1" ]];  then
@@ -667,6 +770,23 @@ return
 fi
 done
 return
+elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
+return
+elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
+all_flag_completion_names="${all_flag_completion_names//$1\ /}"
+a=$1
+shift
+if [[ "$string_flag_completion_names" =~ $a\  ]]; then
+if [[ "$#" == "1" ]];  then
+a="${a//--/}"
+a="${a//-/_}"
+i="_completions_for_$a"
+all_completion_names="${!i}"
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+fi
 else
 return
 fi
@@ -719,23 +839,6 @@ return
 fi
 COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
 return
-elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
-return
-elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
-all_flag_completion_names="${all_flag_completion_names//$1\ /}"
-a=$1
-shift
-if [[ "$string_flag_completion_names" =~ $a\  ]]; then
-if [[ "$#" == "1" ]];  then
-a="${a//--/}"
-a="${a//-/_}"
-i="_completions_for_$a"
-all_completion_names="${!i}"
-COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
-return
-fi
-shift
-fi
 elif [[ "$1" == "attribute_actions" ]]; then
 shift
 all_flag_completion_names="$all_flag_completion_names  "
@@ -806,6 +909,23 @@ return
 fi
 done
 return
+elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
+return
+elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
+all_flag_completion_names="${all_flag_completion_names//$1\ /}"
+a=$1
+shift
+if [[ "$string_flag_completion_names" =~ $a\  ]]; then
+if [[ "$#" == "1" ]];  then
+a="${a//--/}"
+a="${a//-/_}"
+i="_completions_for_$a"
+all_completion_names="${!i}"
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+fi
 else
 return
 fi
@@ -916,6 +1036,23 @@ return
 fi
 done
 return
+elif [[ -z "$(echo $all_flag_completion_names | xargs)" ]]; then
+return
+elif [[ "$all_flag_completion_names" =~ $1\  ]]; then
+all_flag_completion_names="${all_flag_completion_names//$1\ /}"
+a=$1
+shift
+if [[ "$string_flag_completion_names" =~ $a\  ]]; then
+if [[ "$#" == "1" ]];  then
+a="${a//--/}"
+a="${a//-/_}"
+i="_completions_for_$a"
+all_completion_names="${!i}"
+COMPREPLY=($(compgen -W "$all_completion_names" -- "$1"))
+return
+fi
+shift
+fi
 else
 return
 fi