emr_ohsp_interface 1.2.2 → 2.2.0
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- checksums.yaml +4 -4
- data/app/services/emr_ohsp_interface/emr_ohsp_interface_service.rb +111 -50
- data/lib/emr_ohsp_interface/version.rb +1 -1
- metadata +28 -14
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 1c906580f753b4ecd4247310a6e86515ba23ac8f34a022d17c2d133eb8e35ce8
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data.tar.gz: 0343e303c83d845d8e6764797157e056fdc4a34d3060e28d0978b80c32ed292a
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 363dcd8068deb4bab8a6ce38463a173e7e32ea958eb0699fae6c9f8a9685ade0d5248227fd7584a3d562462941e6c270a40585aab5621faa7efee3b04191a8df
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data.tar.gz: 447c8cbb8205eac3365d78b7105674829888ae55c8de36dbf4e4fdb917735ec0263db733d601ec5c10f55237b92b45c52f8f2fee5a956355ddca7473d7baea17
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@@ -443,8 +443,13 @@ module EmrOhspInterface
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end
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def generate_hmis_17_report(start_date=nil,end_date=nil)
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diag_map = settings["hmis_17_map"]
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#pull the data
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type = EncounterType.find_by_name 'Outpatient diagnosis'
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collection = {}
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special_indicators = [
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"Referals from other institutions",
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"OPD total attendance",
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@@ -452,68 +457,124 @@ module EmrOhspInterface
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"Malaria 5 years and older - new",
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"HIV/AIDS - new"
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]
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special_under_five_indicators = [
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"Measles under five years - new",
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"Pneumonia under 5 years- new",
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"Dysentery under 5 years - new",
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"Diarrhoea non - bloody -new cases (under5)",
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"Malaria under 5 years - new"
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"Acute respiratory infections U5 - new"
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"Malaria under 5 years - new"
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]
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diag_map.each do |key,value|
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options = {"ids"=>nil}
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concept_ids = ConceptName.where(name: value).collect{|cn| cn.concept_id}
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if !special_indicators.include?(key) && !special_under_five_indicators.include?(key)
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data = Encounter.where('encounter_datetime BETWEEN ? AND ?
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AND encounter_type = ? AND value_coded IN (?)
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AND concept_id IN(6543, 6542)',
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start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
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end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
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joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
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INNER JOIN person p ON p.person_id = encounter.patient_id').\
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select('encounter.encounter_type, obs.value_coded, p.*')
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all = data.collect{|record| record.person_id}
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options["ids"] = all
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collection[key] = options
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else
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if key.eql?("Referals from other institutions")
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_type = EncounterType.find_by_name 'PATIENT REGISTRATION'
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visit_type = ConceptName.find_by_name 'Type of visit'
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data = Encounter.where('encounter_datetime BETWEEN ? AND ?
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AND encounter_type = ? AND value_coded IS NOT NULL
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AND obs.concept_id = ?', start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
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end_date.to_date.strftime('%Y-%m-%d 23:59:59'),_type.id, visit_type.concept_id).\
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joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
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INNER JOIN person p ON p.person_id = encounter.patient_id
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INNER JOIN concept_name c ON c.concept_id = 6541').\
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select('encounter.encounter_type, obs.value_coded, obs.obs_datetime, p.*, c.name visit_type').\
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group('p.person_id, encounter.encounter_id')
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all = data.collect{|record| record.person_id}
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options["ids"] = all
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collection[key] = options
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end
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if key.eql?("OPD total attendance")
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programID = Program.find_by_name 'OPD Program'
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data = Encounter.find_by_sql(
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"SELECT patient_id, DATE_FORMAT(encounter_datetime,'%Y-%m-%d') enc_date
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FROM encounter e
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LEFT OUTER JOIN person p ON p.person_id = e.patient_id
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WHERE e.voided = 0 AND encounter_datetime BETWEEN '" + start_date.to_date.strftime('%Y-%m-%d 00:00:00') +"'
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AND '" + end_date.to_date.strftime('%Y-%m-%d 23:59:59') + "'
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AND program_id ='" + programID.program_id.to_s + "'
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GROUP BY enc_date"
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).map{|e| e. patient_id}
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options["ids"] = data
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collection[key] = options
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end
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if key.eql?("Referal to other institutions")
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data = Observation.where("obs_datetime BETWEEN ? AND ?
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AND concept_id = ?",start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
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end_date.to_date.strftime('%Y-%m-%d 23:59:59'),'7414').\
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joins('LEFT JOIN location l ON l.location_id = obs.value_text').\
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select('obs.person_id').order('obs_datetime DESC')
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all = data.collect{|record| record.person_id}
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options["ids"] = all
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collection[key] = options
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end
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if key.eql?("HIV/AIDS - new")
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data = ActiveRecord::Base.connection.select_all(
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"SELECT * FROM temp_earliest_start_date
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WHERE date_enrolled BETWEEN '#{start_date}' AND '#{end_date}'
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AND date_enrolled = earliest_start_date
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GROUP BY patient_id" ).to_hash
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all = data.collect{|record| record["patient_id"]}
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options["ids"] = all
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collection[key] = options
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end
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if key.eql?("Measles under five years - new")
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collection[key] = disaggregate('less',concept_ids, start_date, end_date, type)
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end
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if key.eql?("Pneumonia under 5 years- new")
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collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
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end
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if key.eql?("Malaria under 5 years - new")
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collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
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end
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if key.eql?("Malaria 5 years and older - new")
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collection[key] = disaggregate('greater',concept_ids, start_date, end_date, type)
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end
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if key.eql?("Dysentery under 5 years - new")
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collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
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end
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if key.eql?("Diarrhoea non - bloody -new cases (under5)")
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collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
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end
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end
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end
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collection
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-
def registration_report(start_date=nil,end_date=nil)
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ActiveRecord::Base.connection.select_all <<~SQL
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SELECT
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MIN(IFNULL(c.name, 'Unidentified')) AS visit_type,
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obs.person_id
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FROM `encounter`
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LEFT JOIN obs ON obs.encounter_id = encounter.encounter_id AND obs.voided = 0
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LEFT JOIN concept_name c ON c.concept_id = obs.value_coded
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AND c.name IN ('New patient','Revisiting','Referral') AND c.voided = 0
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WHERE
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encounter.voided = 0
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AND DATE(encounter_datetime) BETWEEN '#{start_date}' AND '#{end_date}'
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AND encounter.program_id = 14 -- OPD program
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GROUP BY encounter.patient_id, DATE(encounter_datetime);
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SQL
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end
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def generate_notifiable_disease_conditions_report(start_date=nil,end_date=nil)
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metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: emr_ohsp_interface
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version: !ruby/object:Gem::Version
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version:
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version: 2.2.0
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platform: ruby
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authors:
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- Justin Manda, Petros Kayange,
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- Justin Manda, Petros Kayange, Dominic Kasanga
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2023-
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date: 2023-07-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rails
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@@ -16,20 +16,14 @@ dependencies:
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version:
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- - ">="
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- !ruby/object:Gem::Version
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version: 5.2.4.3
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version: 7.0.6
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version:
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- - ">="
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- !ruby/object:Gem::Version
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version: 5.2.4.3
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version: 7.0.6
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- !ruby/object:Gem::Dependency
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name: rspec
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requirement: !ruby/object:Gem::Requirement
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@@ -50,14 +44,14 @@ dependencies:
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1'
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version: '2.1'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1'
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version: '2.1'
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- !ruby/object:Gem::Dependency
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name: mysql2
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requirement: !ruby/object:Gem::Requirement
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@@ -72,6 +66,26 @@ dependencies:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: sqlite3
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.3.6
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.3.6
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.3'
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description:
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email:
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- justinmandah@gmail.com, kayangepetros@gmail.com, dominickasanga@gmail.com
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@@ -120,7 +134,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubygems_version: 3.
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rubygems_version: 3.4.10
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signing_key:
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specification_version: 4
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summary: This in a gem that facilitates interfacing of EMR, One Health Surveillance
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