emr_ohsp_interface 0.5.3 → 1.1.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/MIT-LICENSE

@@ -1,4 +1,4 @@
-Copyright 2021 petroskayange
+Copyright 2022 petroskayange, dominickasanga
 
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of this software and associated documentation files (the

data/app/controllers/emr_ohsp_interface/emr_ohsp_interface_controller.rb

@@ -18,6 +18,10 @@ class EmrOhspInterface::EmrOhspInterfaceController < ::ApplicationController
     def generate_hmis_15_report
         render json: service.generate_hmis_15_report(params[:start_date],params[:end_date]);
     end
+
+    def generate_hmis_17_report
+        render json: service.generate_hmis_17_report(params[:start_date],params[:end_date]);
+    end
    
     def service
         EmrOhspInterface::EmrOhspInterfaceService

data/app/services/emr_ohsp_interface/emr_ohsp_interface_service.rb

@@ -5,6 +5,7 @@ module EmrOhspInterface
     class << self
       require 'csv'
       require 'rest-client'
+      require 'json'
       def settings
         file = File.read(Rails.root.join("db","idsr_metadata","idsr_ohsp_settings.json"))
         config = JSON.parse(file)
@@ -93,10 +94,11 @@ module EmrOhspInterface
           if request == nil
            response = send_data(collection,"weekly")
           end
+          
         return collection
       end
-      #idsr monthly report
 
+      #idsr monthly report
       def generate_monthly_idsr_report(request=nil,start_date=nil,end_date=nil)
         diag_map = settings["monthly_idsr_map"]
         epi_month = months_generator.first.first.strip
@@ -265,7 +267,10 @@ module EmrOhspInterface
     
         special_indicators = ["Malaria - new cases (under 5)",
           "Malaria - new cases (5 & over)",
-          "HIV confirmed positive (15-49 years) new cases"
+          "HIV confirmed positive (15-49 years) new cases",
+          "Diarrhoea non - bloody -new cases (under5)",
+          "Malnutrition - new case (under 5)",
+          "Acute respiratory infections - new cases (U5)"
         ]
     
         diag_map.each do |key,value|
@@ -315,7 +320,6 @@ module EmrOhspInterface
               options["ids"] = under_five
     
               collection[key] = options
-    
             end
     
             if key.eql?("Malaria - new cases (5 & over)")
@@ -350,11 +354,266 @@ module EmrOhspInterface
     
               collection[key] = options
             end
+
+            if key.eql?("Diarrhoea non - bloody -new cases (under5)")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+    
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+                            collect{|record| record["person_id"]}
+    
+              options["ids"] = under_five
+
+              collection[key] = options
+            end
+
+            if key.eql?("Malnutrition - new case (under 5)")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+    
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+                            collect{|record| record["person_id"]}
+    
+              options["ids"] = under_five
+
+              collection[key] = options
+            end
+
+            if key.eql?("Acute respiratory infections - new cases (U5)")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+    
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+                            collect{|record| record["person_id"]}
+    
+              options["ids"] = under_five
+
+              collection[key] = options
+            end
+
         end
         end
          collection
       end
 
+      def disaggregate(disaggregate_key, concept_ids, start_date, end_date, type)
+        options = {"ids"=>nil}
+        data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+        AND encounter_type = ? AND value_coded IN (?)
+        AND concept_id IN(6543, 6542)',
+        start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+        end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+        joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+        INNER JOIN person p ON p.person_id = encounter.patient_id').\
+        select('encounter.encounter_type, obs.value_coded, p.*')
+
+        if disaggregate_key == "less"
+        options["ids"] = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+        collect{|record| record["person_id"]}
+        else 
+          if disaggregate_key == "greater"
+            options["ids"] = data.select{|record| calculate_age(record["birthdate"]) >= 5 }.\
+            collect{|record| record["person_id"]}
+          end
+        end
+
+        options
+      end
+
+      def generate_hmis_17_report(start_date=nil,end_date=nil)
+
+        diag_map = settings["hmis_17_map"]
+    
+        #pull the data
+        type = EncounterType.find_by_name 'Outpatient diagnosis'
+        collection = {}
+    
+        special_indicators = [
+          "Referals from other institutions",
+          "OPD total attendance",
+          "Referal to other institutions",
+          "Malaria 5 years and older - new"
+        ]
+
+        special_under_five_indicators = [
+          "Measles under five years - new",
+          "Pneumonia under 5 years- new",
+          "Dysentery under 5 years - new",
+          "Diarrhoea non - bloody -new cases (under5)",
+          "Malaria under 5 years - new"
+        ]
+
+        diag_map.each do |key,value|
+          options = {"ids"=>nil}
+          concept_ids = ConceptName.where(name: value).collect{|cn| cn.concept_id}
+    
+          if !special_indicators.include?(key) && !special_under_five_indicators.include?(key)
+            data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+            AND encounter_type = ? AND value_coded IN (?)
+            AND concept_id IN(6543, 6542)',
+            start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+            end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+            joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+            INNER JOIN person p ON p.person_id = encounter.patient_id').\
+            select('encounter.encounter_type, obs.value_coded, p.*')
+    
+            all = data.collect{|record| record.person_id}
+    
+    
+            options["ids"] = all
+    
+            collection[key] = options
+          else
+            if key.eql?("Referals from other institutions") 
+              _type = EncounterType.find_by_name 'PATIENT REGISTRATION'
+              visit_type = ConceptName.find_by_name 'Type of visit'
+      
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IS NOT NULL
+              AND obs.concept_id = ?', start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),_type.id, visit_type.concept_id).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id
+              INNER JOIN concept_name c ON c.concept_id = 6541').\
+              select('encounter.encounter_type, obs.value_coded, obs.obs_datetime, p.*, c.name visit_type').\
+              group('p.person_id, encounter.encounter_id')
+
+              all = data.collect{|record| record.person_id}
+    
+              options["ids"] = all
+      
+              collection[key] = options
+            end
+
+            if key.eql?("OPD total attendance")
+              _type = EncounterType.find_by_name 'PATIENT REGISTRATION'
+              visit_type = ConceptName.find_by_name 'Type of visit'
+       
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IS NOT NULL
+              AND obs.concept_id = ?', start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),_type.id, visit_type.concept_id).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id
+              INNER JOIN concept_name c ON c.concept_id = obs.value_coded
+              LEFT JOIN person_name n ON n.person_id = encounter.patient_id AND n.voided = 0
+              RIGHT JOIN person_address a ON a.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, n.family_name, n.given_name,
+              obs.value_coded, obs.obs_datetime, p.*, c.name visit_type,
+              a.state_province district, a.township_division ta, a.city_village village').\
+              order('n.date_created DESC').group('n.person_id, encounter.encounter_id')
+
+              all = data.collect{|record| record.person_id}
+    
+              options["ids"] = all
+      
+              collection[key] = options
+            end
+
+            if key.eql?("Referal to other institutions")
+              data = Observation.where("obs_datetime BETWEEN ? AND ?
+              AND concept_id = ?",start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),'7414').\
+              joins('LEFT JOIN location l ON l.location_id = obs.value_text').\
+              select('obs.person_id').order('obs_datetime DESC')
+
+              all = data.collect{|record| record.person_id}
+
+              options["ids"] = all
+      
+              collection[key] = options
+            end
+
+            if key.eql?("Measles under five years - new")
+              collection[key] = disaggregate('less',concept_ids, start_date, end_date, type)
+            end
+
+            if key.eql?("Pneumonia under 5 years- new")
+              collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
+            end
+
+            if key.eql?("Malaria under 5 years - new")
+              collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
+            end
+
+            if key.eql?("Malaria 5 years and older - new")
+              collection[key] = disaggregate('greater',concept_ids, start_date, end_date, type)
+            end
+
+            if key.eql?("Dysentery under 5 years - new")
+              collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
+            end
+
+            if key.eql?("Diarrhoea non - bloody -new cases (under5)")
+              collection[key] = disaggregate('less', concept_ids, start_date, end_date, type)
+            end
+
+          end
+        end
+
+        collection
+
+      end
+
+      def generate_notifiable_disease_conditions_report(start_date=nil,end_date=nil)
+        diag_map = settings["notifiable_disease_conditions"]
+
+        start_date = Date.today.strftime("%Y-%m-%d") if start_date.nil?
+        end_date = Date.today.strftime("%Y-%m-%d") if end_date.nil?
+
+        type = EncounterType.find_by_name 'Outpatient diagnosis'
+        collection = {}
+        concept_name_for_sms_portal = {}
+
+        diag_map.each do |key,value|
+          options = {"<5yrs"=>nil,">=5yrs"=>nil}
+          concept_ids = ConceptName.where(name: value).collect{|cn| cn.concept_id}
+
+          data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+          AND encounter_type = ? AND value_coded IN (?)
+          AND concept_id IN(6543, 6542)',
+          start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+          end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+          joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+          INNER JOIN person p ON p.person_id = encounter.patient_id').\
+          select('encounter.encounter_type, obs.value_coded, p.*')
+
+          #under_five
+          under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                      collect{|record| record.person_id}
+          options["<5yrs"] = under_five
+          #above 5 years
+          over_five = data.select{|record| calculate_age(record["birthdate"]) >=5 }.\
+                      collect{|record| record.person_id}
+
+          options[">=5yrs"] =  over_five
+
+          collection[key] = options
+
+          concept_name_for_sms_portal[key] = concept_ids
+        end
+        send_data_to_sms_portal(collection, concept_name_for_sms_portal)
+        return collection
+      end
+
       # helper menthod
       def months_generator
           months = Hash.new
@@ -426,11 +685,11 @@ module EmrOhspInterface
           if !special.include?(key)
               option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                           "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
-                          "value"=>value["<5yrs"].size }
+                          "value"=>value["<5yrs"].size } rescue {}
 
               option2 = {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                           "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[3],
-                          "value"=>value[">=5yrs"].size}
+                          "value"=>value[">=5yrs"].size} rescue {}
 
             #fill data values array
               payload["dataValues"] << option1
@@ -440,25 +699,25 @@ module EmrOhspInterface
                 when special[0]
                   option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                               "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
-                              "value"=>value["<5yrs"].size }
+                              "value"=>value["<5yrs"].size } rescue {}
 
                   payload["dataValues"] << option1
                 when special[1]
                   option2 = {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                               "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[3],
-                              "value"=>value[">=5yrs"].size }
+                              "value"=>value[">=5yrs"].size } rescue {}
 
                   payload["dataValues"] << option2
                 when special[2]
                   option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                               "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
-                              "value"=>value["<5yrs"].size }
+                              "value"=>value["<5yrs"].size } rescue {}
 
                   payload["dataValues"] << option1
                 when special[3]
                   option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
                               "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
-                              "value"=>value["<5yrs"].size}
+                              "value"=>value["<5yrs"].size} rescue {}
 
                   payload["dataValues"] << option1
               end
@@ -480,8 +739,41 @@ module EmrOhspInterface
         puts send
       end
 
+      def send_data_to_sms_portal(data, concept_name_collection)
+        conn2 = settings["sms_server"]
+        data = data.select {|k,v| v.select {|kk,vv| vv.length > 0}.length > 0}
+        payload = {
+          "email"=> conn2["user"],
+          "password" => conn2["pass"],
+          "emr_facility_id" => Location.current_health_center.id,
+          "emr_facility_name" => Location.current_health_center.name,
+          "payload" => data,
+          "concept_name_collection" => concept_name_collection
+        }
+      
+     
+      
+        begin
+          response = RestClient::Request.execute(method: :post,
+            url: conn2["url"],
+            headers:{'Content-Type'=> 'application/json'},
+            payload: payload.to_json
+          )
+        rescue RestClient::ExceptionWithResponse => res
+          if res.class == RestClient::Forbidden
+            puts "error: #{res.class}"
+          end
+        end
+      
+        if response.class != NilClass
+          if response.code == 200
+            puts "success: #{response}"
+          end
+        end
+        
+        end
+
     end
   end
 
-
 end

data/config/routes.rb

@@ -6,4 +6,14 @@ EmrOhspInterface::Engine.routes.draw do
     get '/generate_weekly_idsr_report', to: 'emr_ohsp_interface#generate_weekly_idsr_report'
     get '/generate_monthly_idsr_report', to: 'emr_ohsp_interface#generate_monthly_idsr_report'
     get '/generate_hmis_15_report', to: 'emr_ohsp_interface#generate_hmis_15_report'
+    get '/generate_hmis_17_report', to: 'emr_ohsp_interface#generate_hmis_17_report'
+
+    # for the new crossplatform OPD system
+    get 'api/v1/get_lims_user', to: 'emr_lims_interface#get_user_info'
+    get 'api/v1/get_weeks', to: 'emr_ohsp_interface#weeks_generator'
+    get 'api/v1/get_months', to: 'emr_ohsp_interface#months_generator'
+    get 'api/v1/generate_weekly_idsr_report', to: 'emr_ohsp_interface#generate_weekly_idsr_report'
+    get 'api/v1/generate_monthly_idsr_report', to: 'emr_ohsp_interface#generate_monthly_idsr_report'
+    get 'api/v1/generate_hmis_15_report', to: 'emr_ohsp_interface#generate_hmis_15_report'
+    get 'api/v1/generate_hmis_17_report', to: 'emr_ohsp_interface#generate_hmis_17_report'
 end

data/lib/emr_ohsp_interface/version.rb

@@ -1,3 +1,3 @@
 module EmrOhspInterface
-  VERSION = '0.5.3'
+  VERSION = '1.1.0'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: emr_ohsp_interface
 version: !ruby/object:Gem::Version
-  version: 0.5.3
+  version: 1.1.0
 platform: ruby
 authors:
-- Justin Manda and Petros Kayange
+- Justin Manda, Petros Kayange, and Dominic Kasanga
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-01-20 00:00:00.000000000 Z
+date: 2022-06-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails
@@ -74,7 +74,7 @@ dependencies:
         version: '0'
 description: 
 email:
-- justinmandah@gmail.com, kayangepetros@gmail.com
+- justinmandah@gmail.com, kayangepetros@gmail.com, dominickasanga@gmail.com
 executables: []
 extensions: []
 extra_rdoc_files: []
@@ -120,7 +120,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.2.32
+rubygems_version: 3.0.9
 signing_key: 
 specification_version: 4
 summary: This in a gem that facilitates interfacing of EMR, One Health Surveillance