emr_ohsp_interface 0.4.0 → 0.5.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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data/app/controllers/emr_ohsp_interface/emr_ohsp_interface_controller.rb

@@ -14,6 +14,10 @@ class EmrOhspInterface::EmrOhspInterfaceController < ::ApplicationController
     def generate_monthly_idsr_report
         render json: service.generate_monthly_idsr_report(params[:request],params[:start_date],params[:end_date]);
     end
+
+    def generate_hmis_15_report
+        render json: service.generate_hmis_15_report(params[:start_date],params[:end_date]);
+    end
    
     def service
         EmrOhspInterface::EmrOhspInterfaceService

data/app/services/emr_ohsp_interface/emr_lims_interface_service.rb

@@ -17,18 +17,23 @@ module EmrOhspInterface
       end
 
       def get_patient_number
-        query "SELECT COUNT(*) as 'patient_identify' FROM patients; "
+        get_patient_id = query "SELECT id FROM iblis.patients order by id desc limit 1;"
+
+        get_patient_id.each do |x|
+         return patient_number = x['id']
+        end
+        
+
+
       end
 
       def check_patient_number(patient_id)
-        patient_number = ''
           get_patient_id = query "SELECT patient_number FROM patients WHERE `external_patient_number` ='#{patient_id}'; "
 
           get_patient_id.each do |x|
-            patient_number = x['patient_number']
+            return patient_number = x['patient_number']
           end
 
-        patient_number
       end
 
       def filterpatient_number(data)
@@ -50,7 +55,7 @@ module EmrOhspInterface
         date = time.strftime('%Y-%m-%d %H:%M:%S')
         lab_details.map do |order_params|
           if patient_number.blank?
-            patient_number = filterpatient_number(get_patient_number) + 1
+            patient_number = get_patient_number() + 1
 
             person_data = Person.where('person_id= ?', order_params[:patient_id])[0]
             address_data = PersonAddress.where('person_id= ?', order_params[:patient_id])[0]

data/app/services/emr_ohsp_interface/emr_ohsp_interface_service.rb

@@ -105,7 +105,12 @@ module EmrOhspInterface
         type = EncounterType.find_by_name 'Outpatient diagnosis'
         collection = {}
 
-        special_indicators = ["Malaria in Pregnancy","HIV New Initiated on ART"]
+        special_indicators = ["Malaria in Pregnancy",
+                              "HIV New Initiated on ART",
+                              "Diarrhoea In Under 5",
+                              "Malnutrition In Under 5",
+                              "Underweight Newborns < 2500g in Under 5 Cases",
+                              "Severe Pneumonia in under 5 cases"]
 
         diag_map.each do |key,value|
           options = {"<5yrs"=>nil,">=5yrs"=>nil}
@@ -172,6 +177,76 @@ module EmrOhspInterface
 
               collection[key] = options
             end
+
+            if key.eql?("Diarrhoea In Under 5")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              #under_five
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                          collect{|record| record.person_id}
+              options["<5yrs"] = under_five
+              collection[key] = options
+            end
+
+
+            if key.eql?("Malnutrition In Under 5")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              #under_five
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                          collect{|record| record.person_id}
+              options["<5yrs"] = under_five
+              collection[key] = options
+            end
+
+
+            if key.eql?("Underweight Newborns < 2500g in Under 5 Cases")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              #under_five
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                          collect{|record| record.person_id}
+              options["<5yrs"] = under_five
+              collection[key] = options
+            end
+
+            if key.eql?("Severe Pneumonia in under 5 cases")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              #under_five
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                          collect{|record| record.person_id}
+              options["<5yrs"] = under_five
+              collection[key] = options
+            end
           end
         end
           if request == nil
@@ -180,6 +255,106 @@ module EmrOhspInterface
         return collection
       end
 
+      def generate_hmis_15_report(start_date=nil,end_date=nil)
+
+        diag_map = settings["hmis_15_map"]
+    
+        #pull the data
+        type = EncounterType.find_by_name 'Outpatient diagnosis'
+        collection = {}
+    
+        special_indicators = ["Malaria - new cases (under 5)",
+          "Malaria - new cases (5 & over)",
+          "HIV confirmed positive (15-49 years) new cases"
+        ]
+    
+        diag_map.each do |key,value|
+          options = {"ids"=>nil}
+          concept_ids = ConceptName.where(name: value).collect{|cn| cn.concept_id}
+    
+          if !special_indicators.include?(key)
+            data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+            AND encounter_type = ? AND value_coded IN (?)
+            AND concept_id IN(6543, 6542)',
+            start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+            end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+            joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+            INNER JOIN person p ON p.person_id = encounter.patient_id').\
+            select('encounter.encounter_type, obs.value_coded, p.*')
+    
+            # #under_five
+            # under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+            #             collect{|record| record.person_id}
+            # options["<5yrs"] = under_five
+            # #above 5 years
+            # over_five = data.select{|record| calculate_age(record["birthdate"]) >=5 }.\
+            #             collect{|record| record.person_id}
+    
+            # options[">=5yrs"] =  over_five
+    
+            all = data.collect{|record| record.person_id}
+    
+    
+            options["ids"] = all
+    
+            collection[key] = options
+          else
+            if key.eql?("Malaria - new cases (under 5)")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+    
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+                            collect{|record| record["person_id"]}
+    
+              options["ids"] = under_five
+    
+              collection[key] = options
+    
+            end
+    
+            if key.eql?("Malaria - new cases (5 & over)")
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+    
+              over_and_five = data.select{|record| calculate_age(record["birthdate"])  >= 5 }.\
+                            collect{|record| record["person_id"]}
+    
+              options["ids"] = over_and_five
+    
+              collection[key] = options
+            end
+    
+            if key.eql?("HIV confirmed positive (15-49 years) new cases")
+              data =  ActiveRecord::Base.connection.select_all(
+                "SELECT * FROM temp_earliest_start_date
+                  WHERE date_enrolled BETWEEN '#{start_date}' AND '#{end_date}'
+                  AND date_enrolled = earliest_start_date
+                  GROUP BY patient_id" ).to_hash
+    
+              over_and_15_49 = data.select{|record| calculate_age(record["birthdate"])  >= 15 && calculate_age(record["birthdate"]) <=49 }.\
+                     collect{|record| record["patient_id"]}
+    
+              options["ids"] = over_and_15_49
+    
+              collection[key] = options
+            end
+        end
+        end
+         collection
+      end
+
       # helper menthod
       def months_generator
           months = Hash.new

data/config/routes.rb

@@ -5,4 +5,5 @@ EmrOhspInterface::Engine.routes.draw do
     get '/get_months', to: 'emr_ohsp_interface#months_generator'
     get '/generate_weekly_idsr_report', to: 'emr_ohsp_interface#generate_weekly_idsr_report'
     get '/generate_monthly_idsr_report', to: 'emr_ohsp_interface#generate_monthly_idsr_report'
+    get '/generate_hmis_15_report', to: 'emr_ohsp_interface#generate_hmis_15_report'
 end

data/lib/emr_ohsp_interface/version.rb

@@ -1,3 +1,3 @@
 module EmrOhspInterface
-  VERSION = '0.4.0'
+  VERSION = '0.5.3'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: emr_ohsp_interface
 version: !ruby/object:Gem::Version
-  version: 0.4.0
+  version: 0.5.3
 platform: ruby
 authors:
 - Justin Manda and Petros Kayange
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-11-29 00:00:00.000000000 Z
+date: 2022-01-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails
@@ -120,7 +120,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.8
+rubygems_version: 3.2.32
 signing_key: 
 specification_version: 4
 summary: This in a gem that facilitates interfacing of EMR, One Health Surveillance