emr_ohsp_interface 0.2.0 → 0.3.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 83c80ec468458588f59780732a3f9cfd5edddeb9f1a6d3b4bec35b6ba3c6e68e
-  data.tar.gz: 3685b4e374487f02b7dee2326a099f982610d111c0c554852dd392e05b05c3f5
+  metadata.gz: 6f6553499e58adb8f290bfa2ff597f0c57ca58412b1b7430d2ab8d33494c89b0
+  data.tar.gz: c603ea2729e987c6a85a091f0bd9eaf63b2671e20b9218ebac5edfb706c42ad5
 SHA512:
-  metadata.gz: 76cd0bd019b31b6a3312aa95632ef776c52e00d0693a4f8ee8c2eb7c8abba52a9cdc4dd7efa99ed029afb24b1930dc664fbcaa8283a9dce960397594558711b8
-  data.tar.gz: 9f16e3206cffd4c5e09f3ae0f517d2ecc132efa65fde6933ae57bd46d00139f235bd8d7cc2b89bd0a8596f0831b123ad833ba7ee2be86afddb75d93933982100
+  metadata.gz: 837e42141f3d58d61da5780a4693f834edfbcb40715717ffa858ee20feac78a4e762f2d2265f1b0b7f0c588222d95e2ddaf392cb06c0cdd9555c69fc43227551
+  data.tar.gz: 3e15c6d814d1277208b96ee5084562016cad88ce995f6434c0644a42925dc7620ffec7dfc0e8db285d479b0e97670a8fc0f6f1e54cf66f537eb659e308004b11

data/app/controllers/emr_ohsp_interface/emr_ohsp_interface_controller.rb

@@ -2,8 +2,17 @@ class EmrOhspInterface::EmrOhspInterfaceController < ::ApplicationController
     def weeks_generator
         render json: service.weeks_generator();
     end   
+
     def months_generator
         render json: service.months_generator();
+    end  
+
+    def generate_weekly_idsr_report
+        render json: service.generate_weekly_idsr_report(params[:request],params[:start_date],params[:end_date]);
+    end 
+    
+    def generate_monthly_idsr_report
+        render json: service.generate_monthly_idsr_report(params[:request],params[:start_date],params[:end_date]);
     end
    
     def service

data/app/services/emr_ohsp_interface/emr_ohsp_interface_service.rb

@@ -23,13 +23,14 @@ module EmrOhspInterface
         result = []
         #["waoQ016uOz1", "r1AT49VBKqg", "FPN4D0s6K3m", "zE8k2BtValu"]
         #  ds,              de_id     ,  <5yrs       ,  >=5yrs
+        puts de
         if type == "weekly"
         file = File.open(Rails.root.join("db","idsr_metadata","idsr_weekly_ohsp_ids.csv"))
         else
         file = File.open(Rails.root.join("db","idsr_metadata","idsr_monthly_ohsp_ids.csv"))
         end
         data = CSV.parse(file,headers: true)
-        row = data.select{|row| row["Data Element Name"].strip.downcase.eql?(de.downcase)}
+        row = data.select{|row| row["Data Element Name"].strip.downcase.eql?(de.downcase.strip)}
         ohsp_ds_id = row[0]["Data Set ID"]
         result << ohsp_ds_id
         ohsp_de_id = row[0]["UID"]
@@ -52,13 +53,13 @@ module EmrOhspInterface
         data_set_id = data.first["Data Set ID"]
       end
 
-      def generate_weekly_idsr_report()
+      def generate_weekly_idsr_report(request=nil,start_date=nil,end_date=nil)
 
         diag_map = settings["weekly_idsr_map"]
 
         epi_week = weeks_generator.last.first.strip
-        start_date = weeks_generator.last.last.split("to")[0].strip
-        end_date = weeks_generator.last.last.split("to")[1].strip
+        start_date = weeks_generator.last.last.split("to")[0].strip if start_date.nil?
+        end_date = weeks_generator.last.last.split("to")[1].strip if end_date.nil?
 
         #pull the data
         type = EncounterType.find_by_name 'Outpatient diagnosis'
@@ -89,11 +90,94 @@ module EmrOhspInterface
 
           collection[key] = options
         end
-
-        response = send_data(collection,"weekly")
+          if request == nil
+           response = send_data(collection,"weekly")
+          end
+        return collection
       end
+      #idsr monthly report
+
+      def generate_monthly_idsr_report(request=nil,start_date=nil,end_date=nil)
+        diag_map = settings["monthly_idsr_map"]
+        epi_month = months_generator.first.first.strip
+        start_date = months_generator.first.last[1].split("to").first.strip if start_date.nil?
+        end_date =  months_generator.first.last[1].split("to").last.strip if end_date.nil?
+        type = EncounterType.find_by_name 'Outpatient diagnosis'
+        collection = {}
+
+        special_indicators = ["Malaria in Pregnancy","HIV New Initiated on ART"]
 
-      def generate_monthly_idsr_report()
+        diag_map.each do |key,value|
+          options = {"<5yrs"=>nil,">=5yrs"=>nil}
+          concept_ids = ConceptName.where(name: value).collect{|cn| cn.concept_id}
+          if !special_indicators.include?(key)
+              data = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              #under_five
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5}.\
+                          collect{|record| record.person_id}
+              options["<5yrs"] = under_five
+              #above 5 years
+              over_five = data.select{|record| calculate_age(record["birthdate"]) >=5 }.\
+                          collect{|record| record.person_id}
+
+              options[">=5yrs"] =  over_five
+
+              collection[key] = options
+          else
+            if key.eql?("Malaria in Pregnancy")
+              mal_patient_id = Encounter.where('encounter_datetime BETWEEN ? AND ?
+              AND encounter_type = ? AND value_coded IN (?)
+              AND concept_id IN(6543, 6542)',
+              start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+              end_date.to_date.strftime('%Y-%m-%d 23:59:59'),type.id,concept_ids).\
+              joins('INNER JOIN obs ON obs.encounter_id = encounter.encounter_id
+              INNER JOIN person p ON p.person_id = encounter.patient_id').\
+              select('encounter.encounter_type, obs.value_coded, p.*')
+
+              mal_patient_id=   mal_patient_id.collect{|record| record.person_id}
+              #find those that are pregnant
+              preg = Observation.where(["concept_id = 6131 AND obs_datetime
+                                         BETWEEN ? AND ? AND person_id IN(?)
+                                          AND value_coded =1065",
+                                          start_date.to_date.strftime('%Y-%m-%d 00:00:00'),
+                                          end_date.to_date.strftime('%Y-%m-%d 23:59:59'),mal_patient_id ])
+
+               options[">=5yrs"] =   preg.collect{|record| record.person_id} rescue 0
+               collection[key] = options
+            end
+
+            if key.eql?("HIV New Initiated on ART")
+             data =  ActiveRecord::Base.connection.select_all(
+                        "SELECT * FROM temp_earliest_start_date
+                            WHERE date_enrolled BETWEEN '#{start_date}' AND '#{end_date}'
+                            AND date_enrolled = earliest_start_date
+                             GROUP BY patient_id" ).to_hash
+
+              under_five = data.select{|record| calculate_age(record["birthdate"]) < 5 }.\
+                             collect{|record| record["patient_id"]}
+
+              over_five = data.select{|record| calculate_age(record["birthdate"]) >=5 }.\
+                             collect{|record| record["patient_id"]}
+
+              options["<5yrs"] = under_five
+              options[">=5yrs"] =  over_five
+
+              collection[key] = options
+            end
+          end
+        end
+          if request == nil
+           response = send_data(collection,"monthly")
+          end
+        return collection
       end
 
       # helper menthod
@@ -160,24 +244,56 @@ module EmrOhspInterface
           "orgUnit"=> get_ohsp_facility_id,
           "dataValues"=> []
         }
+         special = ["Severe Pneumonia in under 5 cases","Malaria in Pregnancy",
+                   "Underweight Newborns < 2500g in Under 5 Cases","Diarrhoea In Under 5"]
 
         data.each do |key,value|
-            option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
-                        "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
-                        "value"=>value["<5yrs"].size }
-
-            option2 = {"dataElement"=>get_ohsp_de_ids(key,type)[1],
-                        "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[3],
-                        "value"=>value[">=5yrs"].size}
-
-        #fill data values array
-          payload["dataValues"] << option1
-          payload["dataValues"] << option2
+          if !special.include?(key)
+              option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                          "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
+                          "value"=>value["<5yrs"].size }
+
+              option2 = {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                          "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[3],
+                          "value"=>value[">=5yrs"].size}
+
+            #fill data values array
+              payload["dataValues"] << option1
+              payload["dataValues"] << option2
+          else
+              case key
+                when special[0]
+                  option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                              "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
+                              "value"=>value["<5yrs"].size }
+
+                  payload["dataValues"] << option1
+                when special[1]
+                  option2 = {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                              "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[3],
+                              "value"=>value[">=5yrs"].size }
+
+                  payload["dataValues"] << option2
+                when special[2]
+                  option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                              "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
+                              "value"=>value["<5yrs"].size }
+
+                  payload["dataValues"] << option1
+                when special[3]
+                  option1 =  {"dataElement"=>get_ohsp_de_ids(key,type)[1],
+                              "categoryOptionCombo"=> get_ohsp_de_ids(key,type)[2],
+                              "value"=>value["<5yrs"].size}
+
+                  payload["dataValues"] << option1
+              end
+          end
         end
 
-        puts "now sending these values: #{payload.to_s}"
+        puts "now sending these values: #{payload.to_json}"
         url = "#{conn["url"]}/api/dataValueSets"
         puts url
+        puts "pushing #{type} IDSR Reports"
         send = RestClient::Request.execute(method: :post,
                                             url: url,
                                             headers:{'Content-Type'=> 'application/json'},

data/config/routes.rb

@@ -2,4 +2,6 @@ EmrOhspInterface::Engine.routes.draw do
     resources :radiology, path: 'api/v1/emr_ohsp_interface'      
     get '/get_weeks', to: 'emr_ohsp_interface#weeks_generator'
     get '/get_months', to: 'emr_ohsp_interface#months_generator'
+    get '/generate_weekly_idsr_report', to: 'emr_ohsp_interface#generate_weekly_idsr_report'
+    get '/generate_monthly_idsr_report', to: 'emr_ohsp_interface#generate_monthly_idsr_report'
 end

data/lib/emr_ohsp_interface/version.rb

@@ -1,3 +1,3 @@
 module EmrOhspInterface
-  VERSION = '0.2.0'
+  VERSION = '0.3.0'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: emr_ohsp_interface
 version: !ruby/object:Gem::Version
-  version: 0.2.0
+  version: 0.3.0
 platform: ruby
 authors:
 - Justin Manda
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-09-14 00:00:00.000000000 Z
+date: 2021-09-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails