elixir-toolkit-theme 4.0.0 → 4.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +6 -4
- data/_includes/breadcrumb.html +27 -0
- data/_includes/citation-page.html +19 -0
- data/_includes/contributor-carousel-selection.html +1 -1
- data/_includes/contributor-minitiles-page.html +1 -1
- data/_includes/contributor-tiles-all.html +1 -1
- data/_includes/github-buttons.html +24 -15
- data/_includes/head.html +3 -0
- data/_includes/resource-table-all.html +7 -5
- data/_includes/schemasorg.html +1 -1
- data/_includes/section-navigation-tiles.html +2 -1
- data/_includes/topnav.html +16 -1
- data/_includes/training-table-all.html +1 -1
- data/_layouts/page.html +6 -4
- data/assets/css/main.scss +5 -0
- metadata +6 -4
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 140b7c66e0c04dfbbe10dc5492792c43c88d6a871f74f73a48f317ba7bcb80d6
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data.tar.gz: 1dbd0f382dc4e151582c1bee5bbc596be339281a62b8d90fab3baf2ab79d1695
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 6d078fc983828cfd6744289648dd8f609d5364d8eb8eb80de04863879cb57840b73f988ed8500a9a0e14b3c3364b953552fe0182f396f2ffa75ac67af825f32b
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data.tar.gz: 2563b4a109f9682e11bc96e550dd7c13e4ee5c6ad3404739d0f3ccf871cd995520a6d1914526a87fbda26890c01011f7803c15905f1f701ee6374863fad0f395
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data/README.md
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@@ -37,7 +37,7 @@ remote_theme: ELIXIR-Belgium/elixir-toolkit-theme
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You can lock it onto a specific version using:
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```yaml
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@4.
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@4.1.0
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```
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### Using Ruby Gems (alternative)
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You can lock it onto a specific version like this:
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```ruby
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gem "elixir-toolkit-theme", "~> 4.
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gem "elixir-toolkit-theme", "~> 4.1.0"
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```
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And add this line to your Jekyll site's `_config.yml`:
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- [RDMkit](https://rdmkit.elixir-europe.org/) (CONVERGE)
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- [WorkflowHub](https://about.workflowhub.eu/) (EOSC-life project)
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- [RO-crate](https://www.researchobject.org/ro-crate
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- [RO-crate](https://www.researchobject.org/ro-crate/) (EOSC)
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- [Infectious Diseases Toolkit](https://www.infectious-diseases-toolkit.org/) (BY-COVID)
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- [FAIRDOM](https://fair-dom.org/) (FAIRDOM community)
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- [ABB intranet page at PSB](https://intranet.psb.ugent.be/abb/) (VIB department)
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- [How-to-Guides](https://australianbiocommons.github.io/how-to-guides/) (Australian BioCommons)
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- [SPLASH](https://elixir-europe-training.github.io/ELIXIR-Training-SPLASH/) (ELIXIR Training platform)
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- [1+MG Framework](https://framework.onemilliongenomes.eu/) (GDI)
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- [dHMp norge](https://dhp-stottepakke.github.io/pages/) (ELIXIR Norway)
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- [Learning-Library](https://patcapon39.github.io/Learning-Library/) (Australian BioCommons)
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- [ELIXIR-IT Training Platform](https://elixir-iib-training.github.io/site/training_courses) (ELIXIR IT)
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- [FAIRDOM-SEEK Documentation](https://docs.seek4science.org/) (SEEK community)
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- [FAIR Lesson Plan Handbook](https://elixir-europe-training.github.io/ELIXIR-TrP-FAIR-Converge/) (ELIXIR Training platform)
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- [Data Steward Handbook](https://elixir-uk.github.io/elixir-ds-handbook) (ELIXIR RDM Community)
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- Want your instance here? [Open an issue](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/issues)
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## Dependencies
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<nav id="breadcrumb" aria-label="breadcrumb">
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{% assign crumbs = page.url | remove:'/index.html' | split: '/' %}
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<ol class="breadcrumb">
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{% if crumbs.size > 0 %}
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<li class="breadcrumb-item mt-0">
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<a href="{{ site.baseurl }}/"><i class="fa-solid fa-house fa-xs"></i></a>
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</li>
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{% endif %}
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{% for crumb in crumbs offset: 1 %}
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{% if forloop.last %}
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<li class="breadcrumb-item last mt-0" aria-current="page">
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{{ page.title }}
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</li>
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{% else %}
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{% capture crumb_url %}{{ site.baseurl }}{% assign crumb_limit = forloop.index | plus: 1 %}{% for crumb in crumbs limit: crumb_limit %}{{ crumb | append: "/" }}{% endfor %}{% endcapture %}
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{% assign crumb_title = crumb | replace:'-',' ' | replace:'_',' ' | remove:'.html' | capitalize %}
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{% assign has_index = site.pages | where: "url", crumb_url | first %}
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<li class="breadcrumb-item mt-0">
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{% if has_index %}<a href="{{crumb_url}}">{% if has_index.title %}{{ has_index.title }}{% else %}{{ crumb_title }}{% endif %}</a>
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{% else %}
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{{ crumb_title }}
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{% endif %}
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</li>
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{% endif %}
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{% endfor %}
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</ol>
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</nav>
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{% if page.page_citation and page.title %}
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<h2>How to cite this page</h2>
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<p>
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{% if page.contributors %}
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{{ page.contributors | join: ", " }},
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{% endif %}
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"<em>{{ page.title }}</em>".
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{% if site.url %}
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{{ site.url | remove: "https://www." | remove: "http://www." | remove: "https://" | remove: "http://" }}.
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{% endif %}
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{% assign page_url = page.url | absolute_url %}
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<a href="{{ page_url }}">{{ page_url }}</a> <span id="current_date"></span>.
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</p>
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<script>
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var current_date = new Date().toLocaleDateString('en-uk', { year:"numeric", month:"long", day:"numeric"})
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document.getElementById("current_date").textContent = "(accessed " + current_date + ")";
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</script>
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{% endif %}
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<div class="card-body text-center py-0">
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<p class="card-title">{{ contributor }}</p>
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{%- if contributors[contributor].affiliation %}
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<p class="card-affiliation">{{ contributors[contributor].affiliation }}</p>
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<p class="card-affiliation">{{ contributors[contributor].affiliation | join: " / " }}</p>
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{%- endif %}
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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<div class="card-body text-center py-0">
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<p class="card-title">{{ stripped_name }}</p>
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{%- if contributors[contributor].affiliation %}
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<p class="card-affiliation">{{ contributors[contributor].affiliation }}</p>
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<p class="card-affiliation">{{ contributors[contributor].affiliation | join: " / " }}</p>
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{%- endif %}
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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<div class="card-body text-center py-0">
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<p class="card-title">{{ contributor }}</p>
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{%- if contributors[contributor].affiliation %}
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<p class="card-affiliation">{{ contributors[contributor].affiliation }}</p>
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<p class="card-affiliation">{{ contributors[contributor].affiliation | join: " / " }}</p>
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{%- endif %}
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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{%-
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{%- assign show_github_edit_button = site.theme_variables.github_buttons.edit_me | default: true %}
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{%- assign show_github_history_button = site.theme_variables.github_buttons.history | default: true %}
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{%- assign show_github_open_issue_button = site.theme_variables.github_buttons.open_issue | default: true %}
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{%- if show_github_edit_button or show_github_history_button or show_github_open_issue_button %}
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<div id="edit-me" class="btn-group">
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{
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{
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{
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{% if show_github_edit_button %}
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{% assign repo_url = page.custom_repo_url | default: site.github.repository_url %}
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{% if page.custom_editme %}
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{% assign file_path = page.custom_editme %}
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{% else %}
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{% assign file_path = page.custom_file_path | default: page.path %}
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{% endif %}
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<a role="button" data-bs-toggle="tooltip"
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title="Propose changes to the content of this page on {{site.theme_variables.git_host | default: 'GitHub' }}"
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href="{{repo_url}}/blob/{{site.github.source.branch}}/{{file_path}}"
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class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-pencil-alt"></i></a>
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{%- endif %}
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{%- if show_github_open_issue_button %}
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<a role="button" data-bs-toggle="tooltip" title="Report an issue"
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href="{{repo_url}}/issues/new?title={{'Issue on page: ' | url_encode }}{{page.title | url_encode }}&body={{'I would like to report an issue on the ' | url_encode }}{{page.title | url_encode }}{{' page at `'| url_encode }}{{page.url | url_encode }}{{'`. Description of the issue:' | url_encode }}"
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class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-exclamation"></i></a>
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{%- endif %}
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{%- if
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<a role="button" data-bs-toggle="tooltip" title="
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{%- if page.custom_editme %}
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<a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.custom_editme}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-history"></i></a>
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{%- else %}
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<a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-history"></i></a>
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{%- endif %}
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{%- if show_github_history_button %}
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<a role="button" data-bs-toggle="tooltip" title="Check out the history of this page"
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href="{{repo_url}}/commits/{{site.github.source.branch}}/{{file_path}}"
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class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-history"></i></a>
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{%- endif %}
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</div>
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{%- endif %}
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data/_includes/head.html
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<script>
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var _paq = window._paq = window._paq || [];
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/* tracker methods like "setCustomDimension" should be called before "trackPageView" */
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{%- if site.matomo_cookies == false %}
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_paq.push(['disableCookies']);
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{%- endif %}
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_paq.push(['trackPageView']);
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_paq.push(['enableLinkTracking']);
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(function() {
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{%- else %}
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{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
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{%- endif %}
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{%- assign tool_matches_total = 0 %}
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{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
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{%- unless country_pages.size == 0 %}
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{%- assign tool_matches_total = 0 %}
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{%- assign query = "related_pages." | append: page.type %}
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{%- for country_page in country_pages %}
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{%- if include.tag %}
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{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
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{%- unless tool_matches.size == 0
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{%- unless tool_matches.size == 0 %}
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{%- assign tool_matches_total = tool_matches_total | plus: tool_matches.size %}
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{%- endunless %}
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{%- else %}
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<thead>
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<tr class="text-nowrap">
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<th>Tool or resource
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{%- if include.tag %}
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<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated subset of (and not a comprehensive list of all) tools and resources on this topic - you'll typically find only the tools or resources referenced on this page.">
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<i class="fa-solid fa-info-circle"></i>
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</a>
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{%- endif %}
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</th>
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<th>Description</th>
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<th>Related pages</th>
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<thead>
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<tr class="text-nowrap">
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<th>Tool or resource
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<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
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<i class="fa-solid fa-info-circle"></i>
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</a>
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</th>
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<th>Description</th>
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<th>Related pages</th>
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data/_includes/schemasorg.html
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{%- if contributors[people].affiliation %}
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"affiliation": {
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"@type": "Organization",
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"name": "{{contributors[people].affiliation}}"
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"name": "{{contributors[people].affiliation | join: " / "}}"
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},
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{%- endif %}
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{%- if contributors[people].email %}
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<p class="card-text h-100">{{ current_page.description}}</p>
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{%- endif %}
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{%- if current_page.affiliations %}
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{%- assign pageaffil = current_page.affiliations | sort %}
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{%- assign alllogos = site.data.affiliations %}
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{%- assign allcountries = site.data.countries %}
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<div class="d-flex align-items-center flex-wrap gap-2">
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<span><b><small>Affiliations:</small></b></span>
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{%- for affiliation in
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{%- for affiliation in pageaffil %}
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{%- assign filter_affiliation = alllogos | where: "name", affiliation | first %}
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{%- assign country = affiliation | upcase %}
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{%- if affiliation.size == 2 %}
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data/_includes/topnav.html
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{%- endif %}
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54
54
|
{%- if site.theme_variables.topnav.twitter %}
|
|
55
55
|
<li class="nav-item">
|
|
56
|
-
<a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fa-brands fa-x-twitter me-2"></i>Twitter</a>
|
|
56
|
+
<a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fa-brands fa-x-twitter me-2"></i>X-Twitter</a>
|
|
57
|
+
</li>
|
|
58
|
+
{%- endif %}
|
|
59
|
+
{%- if site.theme_variables.topnav.bluesky %}
|
|
60
|
+
<li class="nav-item">
|
|
61
|
+
<a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.bluesky}}"><i class="fa-brands fa-bluesky me-2"></i>Bluesky</a>
|
|
62
|
+
</li>
|
|
63
|
+
{%- endif %}
|
|
64
|
+
{%- if site.theme_variables.topnav.fosstodon %}
|
|
65
|
+
<li class="nav-item">
|
|
66
|
+
<a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.fosstodon}}"><i class="fa-brands fa-mastodon me-2"></i>FOSStodon</a>
|
|
67
|
+
</li>
|
|
68
|
+
{%- endif %}
|
|
69
|
+
{%- if site.theme_variables.topnav.linkedin %}
|
|
70
|
+
<li class="nav-item">
|
|
71
|
+
<a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.linkedin}}"><i class="fa-brands fa-linkedin me-2"></i>LinkedIn</a>
|
|
57
72
|
</li>
|
|
58
73
|
{%- endif %}
|
|
59
74
|
{%- if site.theme_variables.topnav.github or site.theme_variables.topnav.github == nil %}
|
|
@@ -4,7 +4,7 @@
|
|
|
4
4
|
<thead>
|
|
5
5
|
<tr class="text-nowrap">
|
|
6
6
|
<th>Name
|
|
7
|
-
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated
|
|
7
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="This is a curated subset of (and not a comprehensive list of all) training resources on relevant topics - you'll typically find only training resources referenced in pages of this website.">
|
|
8
8
|
<i class="fa-solid fa-info-circle"></i>
|
|
9
9
|
</a>
|
|
10
10
|
</th>
|
data/_layouts/page.html
CHANGED
|
@@ -3,8 +3,11 @@ layout: default
|
|
|
3
3
|
---
|
|
4
4
|
<main id="main" class="order-1{%- if page.toc or page.toc == nil or page.page_img %} add-grid{% endif %}">
|
|
5
5
|
<div id="intro">
|
|
6
|
+
{%- if site.theme_variables.breadcrumb %}
|
|
7
|
+
{% include breadcrumb.html %}
|
|
8
|
+
{%- endif %}
|
|
6
9
|
{%- if page.title %}
|
|
7
|
-
{%- if page.type %}
|
|
10
|
+
{%- if page.type and site.theme_variables.breadcrumb != true %}
|
|
8
11
|
{%- assign subtitle = page.type | replace: "_", " " | capitalize %}
|
|
9
12
|
<h1 class="has-subtitle order-1 order-md-0"><span class="d-block text-secondary fs-4 ff-body">{{subtitle}}</span><span class="visually-hidden">:</span> {{ page.title }}
|
|
10
13
|
{%- else %}
|
|
@@ -34,12 +37,11 @@ layout: default
|
|
|
34
37
|
{%- endif %}
|
|
35
38
|
{% include affiliation-tiles-page.html %}
|
|
36
39
|
{% include contributor-minitiles-page.html %}
|
|
40
|
+
{% include citation-page.html %}
|
|
37
41
|
{%- if site.theme_variables.github_buttons.position == "bottom" %}
|
|
38
42
|
<div id="github-buttons-wrapper" class="d-flex mt-5">
|
|
39
|
-
|
|
43
|
+
{% include github-buttons.html %}
|
|
40
44
|
</div>
|
|
41
45
|
{%- endif %}
|
|
42
46
|
</div>
|
|
43
47
|
</main>
|
|
44
|
-
|
|
45
|
-
|
data/assets/css/main.scss
CHANGED
|
@@ -10,9 +10,14 @@ permalink: assets/css/main
|
|
|
10
10
|
@import "bootstrap/functions";
|
|
11
11
|
$popover-max-width: 12em;
|
|
12
12
|
$enable-caret: false;
|
|
13
|
+
$breadcrumb-font-size: 0.85rem;
|
|
14
|
+
$breadcrumb-divider: '>';
|
|
15
|
+
$breadcrumb-margin-bottom: 0;
|
|
13
16
|
$h3-font-size: 1rem * 1.6 !default;
|
|
14
17
|
$h2-font-size: 1rem * 2.1 !default;
|
|
15
18
|
$h1-font-size: 1rem * 3.3 !default;
|
|
19
|
+
$navbar-light-toggler-border-color: transparent;
|
|
20
|
+
$navbar-dark-toggler-border-color: transparent;
|
|
16
21
|
$card-border-width: 0;
|
|
17
22
|
$custom-container-max-widths: (
|
|
18
23
|
xxxl: 1700px
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: elixir-toolkit-theme
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 4.
|
|
4
|
+
version: 4.2.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- bedroesb
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date:
|
|
11
|
+
date: 2025-03-18 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: jekyll
|
|
@@ -30,14 +30,14 @@ dependencies:
|
|
|
30
30
|
requirements:
|
|
31
31
|
- - ">="
|
|
32
32
|
- !ruby/object:Gem::Version
|
|
33
|
-
version: 0.1.
|
|
33
|
+
version: 0.1.10
|
|
34
34
|
type: :runtime
|
|
35
35
|
prerelease: false
|
|
36
36
|
version_requirements: !ruby/object:Gem::Requirement
|
|
37
37
|
requirements:
|
|
38
38
|
- - ">="
|
|
39
39
|
- !ruby/object:Gem::Version
|
|
40
|
-
version: 0.1.
|
|
40
|
+
version: 0.1.10
|
|
41
41
|
- !ruby/object:Gem::Dependency
|
|
42
42
|
name: bundler
|
|
43
43
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -79,7 +79,9 @@ files:
|
|
|
79
79
|
- _includes/affiliation-tiles-page.html
|
|
80
80
|
- _includes/affiliation-tiles-selection.html
|
|
81
81
|
- _includes/banner.html
|
|
82
|
+
- _includes/breadcrumb.html
|
|
82
83
|
- _includes/callout.html
|
|
84
|
+
- _includes/citation-page.html
|
|
83
85
|
- _includes/contributor-carousel-selection.html
|
|
84
86
|
- _includes/contributor-minitiles-page.html
|
|
85
87
|
- _includes/contributor-tiles-all.html
|