elixir-toolkit-theme 1.5.0

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  1. checksums.yaml +7 -0
  2. data/LICENSE +21 -0
  3. data/README.md +64 -0
  4. data/_includes/affiliation-tiles-selection.html +15 -0
  5. data/_includes/callout.html +9 -0
  6. data/_includes/contributor-carousel-selection.html +82 -0
  7. data/_includes/contributor-minitiles-page.html +56 -0
  8. data/_includes/contributor-tiles-all.html +63 -0
  9. data/_includes/cookie-popup.html +19 -0
  10. data/_includes/events.html +30 -0
  11. data/_includes/footer.html +39 -0
  12. data/_includes/head.html +90 -0
  13. data/_includes/image.html +21 -0
  14. data/_includes/more-information-tiles.html +97 -0
  15. data/_includes/news.html +23 -0
  16. data/_includes/pageids-overview.html +32 -0
  17. data/_includes/related-pages.html +38 -0
  18. data/_includes/resource-table-all.html +140 -0
  19. data/_includes/resource-table-page.html +61 -0
  20. data/_includes/schemasorg.html +42 -0
  21. data/_includes/section-navigation-tiles-simple.html +10 -0
  22. data/_includes/section-navigation-tiles.html +210 -0
  23. data/_includes/sidebar.html +239 -0
  24. data/_includes/toc.html +8 -0
  25. data/_includes/topnav.html +66 -0
  26. data/_includes/training-table-all.html +30 -0
  27. data/_layouts/default.html +25 -0
  28. data/_layouts/none.html +3 -0
  29. data/_layouts/page.html +37 -0
  30. data/_sass/_bootstrap_variables.scss +10 -0
  31. data/_sass/_custom_classes.scss +0 -0
  32. data/_sass/_custom_variables.scss +71 -0
  33. data/_sass/bootstrap/_accordion.scss +118 -0
  34. data/_sass/bootstrap/_alert.scss +57 -0
  35. data/_sass/bootstrap/_badge.scss +29 -0
  36. data/_sass/bootstrap/_breadcrumb.scss +28 -0
  37. data/_sass/bootstrap/_button-group.scss +139 -0
  38. data/_sass/bootstrap/_buttons.scss +112 -0
  39. data/_sass/bootstrap/_card.scss +216 -0
  40. data/_sass/bootstrap/_carousel.scss +229 -0
  41. data/_sass/bootstrap/_close.scss +40 -0
  42. data/_sass/bootstrap/_containers.scss +41 -0
  43. data/_sass/bootstrap/_dropdown.scss +240 -0
  44. data/_sass/bootstrap/_forms.scss +9 -0
  45. data/_sass/bootstrap/_functions.scss +302 -0
  46. data/_sass/bootstrap/_grid.scss +33 -0
  47. data/_sass/bootstrap/_helpers.scss +9 -0
  48. data/_sass/bootstrap/_images.scss +42 -0
  49. data/_sass/bootstrap/_list-group.scss +174 -0
  50. data/_sass/bootstrap/_mixins.scss +43 -0
  51. data/_sass/bootstrap/_modal.scss +209 -0
  52. data/_sass/bootstrap/_nav.scss +139 -0
  53. data/_sass/bootstrap/_navbar.scss +335 -0
  54. data/_sass/bootstrap/_offcanvas.scss +83 -0
  55. data/_sass/bootstrap/_pagination.scss +64 -0
  56. data/_sass/bootstrap/_placeholders.scss +51 -0
  57. data/_sass/bootstrap/_popover.scss +158 -0
  58. data/_sass/bootstrap/_progress.scss +48 -0
  59. data/_sass/bootstrap/_reboot.scss +625 -0
  60. data/_sass/bootstrap/_root.scss +54 -0
  61. data/_sass/bootstrap/_spinners.scss +69 -0
  62. data/_sass/bootstrap/_tables.scss +155 -0
  63. data/_sass/bootstrap/_toasts.scss +51 -0
  64. data/_sass/bootstrap/_tooltip.scss +115 -0
  65. data/_sass/bootstrap/_transitions.scss +27 -0
  66. data/_sass/bootstrap/_type.scss +104 -0
  67. data/_sass/bootstrap/_utilities.scss +630 -0
  68. data/_sass/bootstrap/_variables.scss +1641 -0
  69. data/_sass/bootstrap/bootstrap-grid.scss +67 -0
  70. data/_sass/bootstrap/bootstrap-reboot.scss +13 -0
  71. data/_sass/bootstrap/bootstrap-utilities.scss +18 -0
  72. data/_sass/bootstrap/bootstrap.scss +53 -0
  73. data/_sass/bootstrap/forms/_floating-labels.scss +63 -0
  74. data/_sass/bootstrap/forms/_form-check.scss +152 -0
  75. data/_sass/bootstrap/forms/_form-control.scss +219 -0
  76. data/_sass/bootstrap/forms/_form-range.scss +91 -0
  77. data/_sass/bootstrap/forms/_form-select.scss +72 -0
  78. data/_sass/bootstrap/forms/_form-text.scss +11 -0
  79. data/_sass/bootstrap/forms/_input-group.scss +121 -0
  80. data/_sass/bootstrap/forms/_labels.scss +36 -0
  81. data/_sass/bootstrap/forms/_validation.scss +12 -0
  82. data/_sass/bootstrap/helpers/_clearfix.scss +3 -0
  83. data/_sass/bootstrap/helpers/_colored-links.scss +12 -0
  84. data/_sass/bootstrap/helpers/_position.scss +30 -0
  85. data/_sass/bootstrap/helpers/_ratio.scss +26 -0
  86. data/_sass/bootstrap/helpers/_stacks.scss +15 -0
  87. data/_sass/bootstrap/helpers/_stretched-link.scss +15 -0
  88. data/_sass/bootstrap/helpers/_text-truncation.scss +7 -0
  89. data/_sass/bootstrap/helpers/_visually-hidden.scss +8 -0
  90. data/_sass/bootstrap/helpers/_vr.scss +8 -0
  91. data/_sass/bootstrap/mixins/_alert.scss +11 -0
  92. data/_sass/bootstrap/mixins/_backdrop.scss +14 -0
  93. data/_sass/bootstrap/mixins/_border-radius.scss +78 -0
  94. data/_sass/bootstrap/mixins/_box-shadow.scss +18 -0
  95. data/_sass/bootstrap/mixins/_breakpoints.scss +127 -0
  96. data/_sass/bootstrap/mixins/_buttons.scss +133 -0
  97. data/_sass/bootstrap/mixins/_caret.scss +64 -0
  98. data/_sass/bootstrap/mixins/_clearfix.scss +9 -0
  99. data/_sass/bootstrap/mixins/_color-scheme.scss +7 -0
  100. data/_sass/bootstrap/mixins/_container.scss +9 -0
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  102. data/_sass/bootstrap/mixins/_forms.scss +144 -0
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  104. data/_sass/bootstrap/mixins/_grid.scss +151 -0
  105. data/_sass/bootstrap/mixins/_image.scss +16 -0
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  110. data/_sass/bootstrap/mixins/_resize.scss +6 -0
  111. data/_sass/bootstrap/mixins/_table-variants.scss +21 -0
  112. data/_sass/bootstrap/mixins/_text-truncate.scss +8 -0
  113. data/_sass/bootstrap/mixins/_transition.scss +26 -0
  114. data/_sass/bootstrap/mixins/_utilities.scss +89 -0
  115. data/_sass/bootstrap/mixins/_visually-hidden.scss +29 -0
  116. data/_sass/bootstrap/utilities/_api.scss +47 -0
  117. data/_sass/bootstrap/vendor/_rfs.scss +354 -0
  118. data/assets/css/all.min.css +5 -0
  119. data/assets/css/dataTables.bootstrap5.min.css +5 -0
  120. data/assets/css/flag-icon.min.css +1 -0
  121. data/assets/css/main.scss +678 -0
  122. data/assets/css/syntax.css +60 -0
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+ SHA256:
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data/LICENSE ADDED
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2021 ELIXIR Belgium
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
data/README.md ADDED
@@ -0,0 +1,64 @@
1
+ # ELIXIR toolkit theme
2
+
3
+ This repository is used to build a flexible Jekyll theme using bootstrap 5 as CSS framework.
4
+
5
+ ## Used packages:
6
+
7
+ - [Bootstrap5](https://github.com/twbs/bootstrap)
8
+ - [DataTables](https://datatables.net/examples/styling/bootstrap5.html)
9
+ - [AnchorJS](https://www.bryanbraun.com/anchorjs/)
10
+ - [lunr.js](https://lunrjs.com/)
11
+ - [jQuery](https://jquery.com/)
12
+ - [jekyll-table-of-contents](https://github.com/ghiculescu/jekyll-table-of-contents)
13
+ - [jQuery Navgoco Menus](https://github.com/tefra/navgoco)
14
+
15
+
16
+ ## Using Jekyll
17
+
18
+ The website is build on GitHub using Jekyll, a simple, static site generator based on ruby. When you have a local copy cloned onto your computer, it is possible to generate the website based on this repo. This makes it possible to preview changes live, every time you save a file from within the GitHub jekyll-bootstrap-theme repo. Follow these steps to deploy the website based on your local clone (copy) of the jekyll-bootstrap-theme repo:
19
+
20
+ Make sure you have cloned the jekyll-bootstrap-theme repo:
21
+
22
+ git clone git@github.com:USERNAME/jekyll-bootstrap-theme.git
23
+ cd jekyll-bootstrap-theme
24
+
25
+
26
+ To run the website locally, you can either use [Docker](https://www.docker.com/) or use Jekyll directly after installing various dependencies.
27
+
28
+ ### Run using Docker
29
+
30
+ If not already installed on your machine, install Docker. From the root of the ``jekyll-bootstrap-theme`` directory, run:
31
+ ```
32
+ docker run -it --rm -p 4000:4000 -v $PWD:/srv/jekyll jekyll/jekyll:latest /bin/bash -c "chmod a+w /srv/jekyll/Gemfile.lock && chmod 777 /srv/jekyll && jekyll serve -w"
33
+ ```
34
+ This will start the docker container and serve the website locally.
35
+
36
+ ### Run using Jekyll directly
37
+
38
+ 1. If not already present on your machine, install ruby. Note that incompatibility issues may arise with ruby 3.0.0 (released 25.12.20) or newer versions.
39
+
40
+
41
+ 1. Install Jekyll
42
+ If you have never installed or run a Jekyll site locally on your computer, follow these instructions to install Jekyll:
43
+ * Install Jekyll on MacOS/Ubuntu/Other_Linux/Windows: [https://jekyllrb.com/docs/installation/](https://jekyllrb.com/docs/installation/)
44
+
45
+ 1. Install Bundler and Jekyll
46
+
47
+ ```
48
+ gem install jekyll bundler
49
+ ```
50
+
51
+ 1. Install dependencies
52
+
53
+ ```
54
+ bundle install
55
+ ```
56
+
57
+ 1. deploy website
58
+
59
+ ```
60
+ bundle exec jekyll serve
61
+ ```
62
+
63
+ Additional information can be found at the following link: [https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll](https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll)
64
+
@@ -0,0 +1,15 @@
1
+ {%- assign alllogos = site.data.affiliations %}
2
+ <div class="row row-cols-2 row-cols-sm-3 row-cols-md-4 g-5 my-3">
3
+ {%- assign filtered_logos = alllogos | where: "type", include.type %}
4
+ {%- for affiliation in filtered_logos %}
5
+ {%- if affiliation.image_url and affiliation.expose == true %}
6
+ <div class="col">
7
+ <div class="card h-100 border-0">
8
+ <div class="my-auto">
9
+ {% if affiliation.url %}<a href="{{ affiliation.url }}">{% endif %}<img class="card-img-top" src="{{ affiliation.image_url | relative_url }}" alt="{{ affiliation.name }}">{%- if affiliation.url %}</a>{% endif %}
10
+ </div>
11
+ </div>
12
+ </div>
13
+ {%- endif %}
14
+ {%- endfor %}
15
+ </div>
@@ -0,0 +1,9 @@
1
+ {%- if include.type == "tip" %}
2
+ <div markdown="span" class="alert alert-success" role="alert"><i class="fas fa-check-square"></i> <b>Tip:</b> {{include.content}}</div>
3
+ {%- elsif include.type == "important" %}
4
+ <div markdown="span" class="alert alert-warning" role="alert"><i class="fas fa-exclamation-triangle"></i> <b>Important:</b> {{include.content}}</div>
5
+ {%- elsif include.type == "note" %}
6
+ <div markdown="span" class="alert alert-info" role="alert"><i class="fas fa-info-circle"></i> <b>Note:</b> {{include.content}}</div>
7
+ {%- elsif include.type == "warning" %}
8
+ <div markdown="span" class="alert alert-danger" role="alert"><i class="fas fa-exclamation-circle"></i> <b>Warning:</b> {{include.content}}</div>
9
+ {%- endif %}
@@ -0,0 +1,82 @@
1
+ {%- assign contributors = site.data.CONTRIBUTORS %}
2
+ {%- assign nr = include.nr | default: 5 %}
3
+ {%- if include.custom %}
4
+ {%- assign allcontributors = include.custom | split: ", " | sort %}
5
+ {%- else %}
6
+ {%- for page in site.pages %}
7
+ {%- if page.contributors and page.search_exclude != true %}
8
+ {%- assign pagecontr = page.contributors | join: ", " %}
9
+ {%- if allcontrstr %}
10
+ {%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %}
11
+ {%- else %}
12
+ {%- assign allcontrstr = allcontrstr | append: pagecontr %}
13
+ {%- endif %}
14
+ {%- endif %}
15
+ {%- endfor %}
16
+ {%- for contr in contributors %}
17
+ {%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
18
+ {%- endfor %}
19
+ {%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
20
+ {%- endif %}
21
+ <div id="contributors-carousel" class="carousel carousel-dark slide my-4" data-ride="carousel" data-bs-interval="7000">
22
+ <div class="carousel-inner">
23
+ {%- assign counter = 0 %}
24
+ {%- for contributor in allcontributors %}
25
+ {%- capture modulo %}{{ counter | modulo:nr }}{% endcapture %}
26
+ {%- if modulo == '0' or counter == 0 %}
27
+ {%- if counter != 0 %}
28
+ </div>
29
+ </div>
30
+ {%- endif %}
31
+ <div class="carousel-item {% if counter == 0 %}active{% endif %}">
32
+ <div class="row row-cols-5 contributor-cards g-1 g-sm-4 ">
33
+ {%- endif %}
34
+ <div class="col">
35
+ <div class="card h-100">
36
+ {%- assign id = contributors[contributor].git | default: 'no_github' %}
37
+ <div>
38
+ {%- if contributors[contributor].image_url %}
39
+ <img src="{{ contributors[contributor].image_url }}" class="card-img-top p-3 rounded-circle" alt="{{ contributor }}">
40
+ {%- else %}
41
+ <img src="https://avatars.githubusercontent.com/{{id}}" class="card-img-top p-3 rounded-circle" alt="{{ contributor }}">
42
+ {%- endif %}
43
+ </div>
44
+ <div class="card-body text-center py-0">
45
+ <p class="card-title">{{ contributor }}</p>
46
+ {%- if contributors[contributor].affiliation %}
47
+ <p class="card-affiliation">{{ contributors[contributor].affiliation }}</p>
48
+ {%- endif %}
49
+ </div>
50
+ {%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
51
+ <div class="card-footer">
52
+ <div class="d-flex justify-content-center">
53
+ {%- if contributors[contributor].git %}
54
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
55
+ {%- endif %}
56
+ {%- if contributors[contributor].email %}
57
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
58
+ {%- endif %}
59
+ {%- if contributors[contributor].orcid %}
60
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
61
+ {%- endif %}
62
+ </div>
63
+ </div>
64
+ {%- endif %}
65
+ </div>
66
+ </div>
67
+ {%- assign counter = counter | plus:1 %}
68
+ {%- if forloop.last %}
69
+ </div>
70
+ {%- endif %}
71
+ {%- endfor %}
72
+ </div>
73
+ <button class="carousel-control-prev" type="button" data-bs-target="#contributors-carousel" data-bs-slide="prev">
74
+ <span class="carousel-control-prev-icon" aria-hidden="true"></span>
75
+ <span class="visually-hidden">Previous</span>
76
+ </button>
77
+ <button class="carousel-control-next" type="button" data-bs-target="#contributors-carousel" data-bs-slide="next">
78
+ <span class="carousel-control-next-icon" aria-hidden="true"></span>
79
+ <span class="visually-hidden">Next</span>
80
+ </button>
81
+ </div>
82
+ </div>
@@ -0,0 +1,56 @@
1
+ {%- if page.contributors and page.contributors.size != 0 %}
2
+ <span class="d-block h2-like fs-2 text-dark">Contributors</span>
3
+ <div class="p-4 rounded mt-4 page-contributors">
4
+ {%- assign contributors = site.data.CONTRIBUTORS %}
5
+ {%- assign page_contributors = page.contributors | sort %}
6
+ {%- for contributor in page_contributors %}
7
+ {%- assign id = contributors[contributor].git | default: 'no_github' %}
8
+ {%- capture html_code %}
9
+ {%- assign stripped_name = contributor | replace: "'", " " %}
10
+ <div class="d-flex justify-content-center">
11
+ {%- if contributors[contributor].image_url %}
12
+ <img class="img-fluid rounded-circle contributor-img" src="{{ contributors[contributor].image_url }}" alt="Avatar of the contributor {{ stripped_name }}">
13
+ {%- else %}
14
+ <img class="img-fluid rounded-circle contributor-img" src="https://avatars.githubusercontent.com/{{ id }}" alt="Avatar of the contributor {{ stripped_name }}">
15
+ {%- endif %}
16
+ </div>
17
+ <div class="d-flex mt-3 justify-content-center">
18
+ {%- if contributors[contributor].git %}
19
+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
20
+ {%- endif %}
21
+ {%- if contributors[contributor].email %}
22
+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
23
+ {%- endif %}
24
+ {%- if contributors[contributor].orcid %}
25
+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
26
+ {%- endif %}
27
+ </div>
28
+ {%- endcapture %}
29
+ <a tabindex="0" role="button" class="btn contributor-link hover-primary m-1 position-relative" data-bs-trigger="focus" data-bs-html="true" data-bs-container="body" data-bs-toggle="popover" data-bs-placement="top" data-bs-content='{{html_code}}' title="{{contributor}}">
30
+ <div class="d-flex align-items-center">
31
+ <div class="flex-shrink-0">
32
+ {%- if contributors[contributor].image_url %}
33
+ <img class="img-fluid rounded-circle contributor-img-sm" src="{{ contributors[contributor].image_url }}" alt="Avatar of the contributor {{ stripped_name }}">
34
+ {%- else %}
35
+ <img class="img-fluid rounded-circle contributor-img-sm" src="https://avatars.githubusercontent.com/{{ id }}" alt="Avatar of the contributor {{ stripped_name }}">
36
+ {%- endif %}
37
+ </div>
38
+ <div class="flex-grow-1 ms-2">
39
+ {{ contributor }}
40
+ </div>
41
+ </div>
42
+ <div class="position-absolute top-0 start-100 translate-middle">
43
+ {%- if page.coordinators %}
44
+ {%- for coordinator in page.coordinators %}
45
+ {%- if coordinator == contributor %}
46
+ <div class="rounded-circle coordinator-crown">
47
+ <i class="fa fa-crown"></i>
48
+ </div>
49
+ {%- endif %}
50
+ {%- endfor %}
51
+ {%- endif %}
52
+ </div>
53
+ </a>
54
+ {%- endfor %}
55
+ </div>
56
+ {%- endif %}
@@ -0,0 +1,63 @@
1
+ {%- assign contributors = site.data.CONTRIBUTORS %}
2
+ {%- if include.custom %}
3
+ {%- assign allcontributors = include.custom | split: ", " | sort %}
4
+ {%- else %}
5
+ {%- for page in site.pages %}
6
+ {%- if page.contributors and page.search_exclude != true %}
7
+ {%- assign pagecontr = page.contributors | join: ", " %}
8
+ {%- if allcontrstr %}
9
+ {%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %}
10
+ {%- else %}
11
+ {%- assign allcontrstr = allcontrstr | append: pagecontr %}
12
+ {%- endif %}
13
+ {%- endif %}
14
+ {%- endfor %}
15
+ {%- for contr in contributors %}
16
+ {%- if allcontrstr %}
17
+ {%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
18
+ {%- else %}
19
+ {%- assign allcontrstr = allcontrstr | append: contr[0] %}
20
+ {%- endif %}
21
+ {%- endfor %}
22
+ {%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
23
+ {%- endif %}
24
+ <div class="row row-cols-2 row-cols-sm-3 row-cols-md-4 row-cols-xl-5 g-4 contributor-cards">
25
+ {%- for contributor in allcontributors %}
26
+ <div class="col">
27
+ <div class="card h-100">
28
+ {%- assign id = contributors[contributor].git | default: 'no_github' %}
29
+ <div class="position-relative">
30
+ {%- if contributors[contributor].image_url %}
31
+ <img src="{{ contributors[contributor].image_url }}" class="card-img-top p-3 rounded-circle" alt="{{ contributor }}">
32
+ {%- else %}
33
+ <img src="https://avatars.githubusercontent.com/{{id}}" class="card-img-top p-3 rounded-circle" alt="{{ contributor }}">
34
+ {%- endif %}
35
+ {%- if contributors[contributor].role %}
36
+ <span class="badge position-absolute top-0 end-0">{{ contributors[contributor].role | capitalize }}</span>
37
+ {%- endif %}
38
+ </div>
39
+ <div class="card-body text-center py-0">
40
+ <p class="card-title">{{ contributor }}</p>
41
+ {%- if contributors[contributor].affiliation %}
42
+ <p class="card-affiliation">{{ contributors[contributor].affiliation }}</p>
43
+ {%- endif %}
44
+ </div>
45
+ {%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
46
+ <div class="card-footer">
47
+ <div class="d-flex justify-content-center">
48
+ {%- if contributors[contributor].git %}
49
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
50
+ {%- endif %}
51
+ {%- if contributors[contributor].email %}
52
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
53
+ {%- endif %}
54
+ {%- if contributors[contributor].orcid %}
55
+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
56
+ {%- endif %}
57
+ </div>
58
+ </div>
59
+ {%- endif %}
60
+ </div>
61
+ </div>
62
+ {%- endfor %}
63
+ </div>
@@ -0,0 +1,19 @@
1
+ {%- if site.gtag %}
2
+ <!-- START Bootstrap-Cookie-Alert -->
3
+ <div class="alert text-center cookiealert rounded-0" role="alert">
4
+ We use cookies to ensure you get the best experience on our website. Read our
5
+ <a class="fw-bold" href="{{ '/privacy.html' | relative_url}}">privacy policy</a> to find out more.
6
+ <button type="button" id="acceptcookies" class="btn btn-primary ms-2">
7
+ Got it!
8
+ </button>
9
+ </div>
10
+ <script>
11
+ /*
12
+ * Bootstrap Cookie Alert by Wruczek
13
+ * https://github.com/Wruczek/Bootstrap-Cookie-Alert
14
+ * Released under MIT license
15
+ */
16
+ !function () { "use strict"; var n = document.querySelector(".cookiealert"), e = document.querySelector("#acceptcookies"); n && (n.offsetHeight, function (e) { for (var t = e + "=", o = decodeURIComponent(document.cookie).split(";"), c = 0; c < o.length; c++) { for (var n = o[c]; " " === n.charAt(0);)n = n.substring(1); if (0 === n.indexOf(t)) return n.substring(t.length, n.length) } return "" }("acceptCookies") || n.classList.add("show"), e.addEventListener("click", function () { var e, t, o, c; e = "acceptCookies", t = !0, o = 365, (c = new Date).setTime(c.getTime() + 24 * o * 60 * 60 * 1e3), c = "expires=" + c.toUTCString(), document.cookie = e + "=" + t + ";" + c + ";path=/", n.classList.remove("show"), window.dispatchEvent(new Event("cookieAlertAccept")) })) }();
17
+ </script>
18
+ <!-- END Bootstrap-Cookie-Alert -->
19
+ {%- endif %}
@@ -0,0 +1,30 @@
1
+ <div class="events {{include.event_type}}s">
2
+ {%- if include.title == "true" %}
3
+ <h2 class="mt-5 text-dark">{{include.event_type | replace: "_", " " | capitalize}}s</h2>
4
+ {%- endif %}
5
+ {%- assign events = site.data.events %}
6
+ <ul class="list-unstyled mt-3">
7
+ {%- for event in events %}
8
+ <li class='{{include.event_type}}' data-start='{{ event.startDate}}'>
9
+ <span class="title mb-1">{{ event.name | escape }}</span>
10
+ <p class="text-muted mb-0"><i class="far fa-calendar me-2"></i><time datetime="{{ event.startDate | date: '%e %B, %Y %H:%M' }}">{{ event.startDate | date_to_long_string }} {{event.startTime}}</time>
11
+ {% if event.endDate or event.endTime %} - <time datetime="{{ event.endDate | date: '%e %B, %Y %H:%M %Z' }}">{{ event.endDate | date_to_long_string }} {{event.endTime}}</time>{% endif %}</p>
12
+ {%- if event.location %}
13
+ <i class="fas fa-map-marker-alt me-2 text-muted"></i>
14
+ <div class="d-inline-block text-muted">{{ event.location | markdownify }}</div>
15
+ {%- endif %}
16
+ {%- if event.description %}
17
+ {{ event.description | markdownify }}
18
+ {%- endif %}
19
+ </li>
20
+ {%- endfor %}
21
+ </ul>
22
+ {%- if include.caption == "true" %}
23
+ <small>An overview of all our events can be fount on the <a href="/events.html">events page</a>.</small>
24
+ {%- endif %}
25
+ </div>
26
+ <script>
27
+ $(function () {
28
+ show_{ { include.event_type } } s();
29
+ });
30
+ </script>
@@ -0,0 +1,39 @@
1
+ <footer id="footer">
2
+ <div class="container py-1 py-4">
3
+ <div class="row g-4 d-flex justify-content-between">
4
+ {%- for column in site.data.footer.columns %}
5
+ {%- if column.type == "image" %}
6
+ <div class="col-lg-{{column.width}} col-sm-6 d-flex justify-content-center">
7
+ <img class="my-auto" width="{{column.image_width}}" src="{{ column.src | relative_url }}" alt="{{column.alt}}" />
8
+ </div>
9
+ {%- elsif column.type == "links" %}
10
+ <div class="col-lg-{{column.width}} col-sm-6">
11
+ <ul class="mb-0">
12
+ {%- for link in column.children %}
13
+ {%- if link.url != nil and link.external_url == nil%}
14
+ <li><a href="{{ link.url | relative_url }}">{{link.url_text}}</a></li>
15
+ {%- elsif link.external_url != nil and link.url == nil %}
16
+ <li><a href="{{link.external_url}}">{{link.url_text}}</a></li>
17
+ {%- else %}
18
+ <li>{{link.url_text}}</li>
19
+ {%- endif %}
20
+ {%- endfor %}
21
+ </ul>
22
+ </div>
23
+ {%- endif %}
24
+ {%- endfor %}
25
+ </div>
26
+ {%- unless site.data.footer.extra_line == nil %}
27
+ <div class="row">
28
+ <div class="text-center pt-4 mb-0">
29
+ {{site.data.footer.extra_line | markdownify }}
30
+ </div>
31
+ </div>
32
+ {%- endunless %}
33
+ </div>
34
+ {%- unless site.data.footer.copyright == nil %}
35
+ <div class="copyright text-center p-4">
36
+ {{ site.data.footer.copyright | markdownify }}
37
+ </div>
38
+ {%- endunless %}
39
+ </footer>
@@ -0,0 +1,90 @@
1
+ <head>
2
+ <meta charset="utf-8">
3
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
4
+ <meta name="viewport" content="width=device-width, initial-scale=1">
5
+ <meta name="description" content="{% if page.description %}{{ page.description | strip_html | strip_newlines | truncate: 160 }}{% else %}{{ site.description }}{% endif %}">
6
+ {%- capture keywords %}
7
+ {%- if page.related_pages %}
8
+ {%- for section in page.related_pages %}
9
+ {%- unless section[1] == nil %}{{ section[1] | join: ', ' }}
10
+ {%- endunless %}
11
+ {%- endfor %}
12
+ {%- endif %}
13
+ {%- endcapture %}
14
+ <meta name="keywords" content="{{keywords}}">
15
+ <meta property="og:title" content="{{ site.title }}" />
16
+ <meta property="og:description" content="{{ site.description }}" />
17
+ <meta property="og:image" content="//{{site.github.url | remove: 'https://' | remove: 'http://'}}/assets/img/apple-touch-icon.png" />
18
+ <meta name="apple-mobile-web-app-title" content="{{site.title}}">
19
+ <meta name="msapplication-TileColor" content="#{{site.theme_variables.theme_color}}">
20
+ <meta name="theme-color" content="#{{site.theme_variables.theme_color}}">
21
+ {%- if page.search_exclude == true and page.url != "/index.html" %}
22
+ <meta name="robots" content="noindex" />
23
+ {%- endif %}
24
+ {%- if page.type %}
25
+ {%- assign subtitle = page.type | replace: "_", " " | capitalize %}
26
+ {%- endif %}
27
+ <title>{% if page.title %}{% if subtitle %}{{subtitle}}: {% endif %}{{ page.title }} | {{ site.title }}{%- else %}{{ site.title }}{% endif %}</title>
28
+ <!-- Syntax highlighting -->
29
+ <link rel="stylesheet" href="{{ 'assets/css/syntax.css' | relative_url }}">
30
+ <!-- Country flags -->
31
+ <link rel="stylesheet" href="{{ 'assets/css/flag-icon.min.css' | relative_url }}">
32
+ <!-- Font Awesome 5 Icons -->
33
+ <link rel="stylesheet" type="text/css" href="{{ 'assets/css/all.min.css' | relative_url }}">
34
+ <!-- Main css file -->
35
+ <link rel="stylesheet" href="{{ 'assets/css/main.css' | relative_url }}">
36
+ {%- if site.theme_variables.fonts.size != 0 %}
37
+ <!-- Main font(s) -->
38
+ {%- for font in site.theme_variables.fonts %}
39
+ <link href="{{font}}" rel="stylesheet">
40
+ {%- endfor %}
41
+ {%- endif %}
42
+ <!-- JavaScript -->
43
+ <script src="{{ 'assets/js/jquery-3.5.1.min.js' | relative_url }}"></script>
44
+ <script src="{{ 'assets/js/lunr.min.js' | relative_url }}"></script>
45
+ <script src="{{ 'assets/js/bootstrap.bundle.min.js' | relative_url }}"></script>
46
+ <script src="{{ 'assets/js/anchor.min.js' | relative_url }}"></script>
47
+ <script src="{{ 'assets/js/toc.js' | relative_url }}"></script>
48
+ <script src="{{ 'assets/js/jquery.navgoco.js' | relative_url }}"></script>
49
+ <script src="{{ 'assets/js/jquery.cookie.min.js' | relative_url }}"></script>
50
+ <script src="{{ 'assets/js/main.js' | relative_url }}"></script>
51
+ <script src="{{ 'assets/js/search.js' | relative_url }}"></script>
52
+ {%- if page.datatable == true %}
53
+ <!-- Include the standard DataTables bits -->
54
+ <link rel="stylesheet" type="text/css" href="{{ 'assets/css/dataTables.bootstrap5.min.css' | relative_url }}">
55
+ <script type="text/javascript" charset="utf8" src="{{ 'assets/js/jquery.dataTables.min.js' | relative_url }}"></script>
56
+ <script type="text/javascript" charset="utf8" src="{{ 'assets/js/dataTables.bootstrap5.min.js' | relative_url }}"></script>
57
+ <script type="text/javascript">
58
+ $.fn.DataTable.ext.pager.numbers_length = 5;
59
+ $(document).ready(function () {
60
+ $('div.datatable-begin').nextUntil('div.datatable-end', 'table').addClass('display');
61
+ $('table.display').DataTable({
62
+ lengthMenu: [[25, 50, 100, -1], [25, 50, 100, "All"]],
63
+ stateSave: true,
64
+ searching: true,
65
+ language: {
66
+ searchPlaceholder: "Type here..."
67
+ }
68
+ });
69
+ });
70
+ </script>
71
+ {%- endif %}
72
+ <!-- favicon -->
73
+ <link rel="apple-touch-icon" sizes="180x180" href="{{ 'assets/img/apple-touch-icon.png' | relative_url }}">
74
+ <link rel="icon" type="image/png" sizes="32x32" href="{{ 'assets/img/favicon-32x32.png' | relative_url }}">
75
+ <link rel="icon" type="image/png" sizes="16x16" href="{{ 'assets/img/favicon-16x16.png' | relative_url }}">
76
+ <link rel="manifest" href="{{ 'assets/img/site.webmanifest' | relative_url }}">
77
+ <link rel="mask-icon" href="{{ 'assets/img/safari-pinned-tab.svg' | relative_url }}" color="#{{site.theme_variables.theme_color}}">
78
+ <link rel="shortcut icon" href="{{ 'assets/img/favicon.ico' | relative_url }}">
79
+ <!-- Schema.org metadata -->
80
+ {% include schemasorg.html %}
81
+ {%- if site.gtag and jekyll.environment == "production"%}
82
+ <!-- Google analytics -->
83
+ <script async src="https://www.googletagmanager.com/gtag/js?id={{ site.gtag }}"></script>
84
+ <script> window.dataLayer = window.dataLayer || []; function gtag() { dataLayer.push(arguments); } gtag('js', new Date()); gtag('config', '{{ site.gtag }}');</script>
85
+ {%- endif %}
86
+ {%- if site.plausible and jekyll.environment == "production"%}
87
+ <!-- Plausible -->
88
+ <script defer data-domain="{{site.plausible}}" src="{{site.plausible_src | default: 'https://plausible.io/js/plausible.js'}}"></script>
89
+ {%- endif %}
90
+ </head>
@@ -0,0 +1,21 @@
1
+ <figure class="{% if {{include.inline}} == true %}my-0{% else %}my-4{%- endif %} {% if {{include.class}} %}{{include.class}}{%- endif %}"{% if {{include.max-width}} %}width={{include.max-width}}{%- endif %}>
2
+ {%- capture file_url -%}
3
+ {{ "/images/" | append:include.file | relative_url }}
4
+ {%- endcapture -%}
5
+ {%- if {{include.url}} %}
6
+ <a target="_blank" rel="noopener" href="{{include.url}}">
7
+ {%- elsif {{include.click}} == true %}
8
+ <a target="_blank" rel="noopener noreferrer" href="{{file_url}}">
9
+ {%- endif %}
10
+ <img src="{{file_url}}" alt="{{include.alt}}" class="figure-img img-fluid rounded"/>
11
+ {%- if {{include.url}} or {{include.click}} == true %}
12
+ </a>
13
+ {%- endif %}
14
+ {%- if {{include.caption}} %}
15
+ <figcaption class="figure-caption">
16
+ {{include.caption}}
17
+ </figcaption>
18
+ {%- endif %}
19
+ {%- if {{include.inline}} != true %}
20
+ </figure>
21
+ {%- endif %}
@@ -0,0 +1,97 @@
1
+ {%- if page.faircookbook or page.fairsharing or page.training or page.dsw %}
2
+ <!-- More information -->
3
+ <h2>More information</h2>
4
+
5
+ <div class="row row-cols-1 row-cols-md-2 g-4 mt-2">
6
+ {%- if page.training %}
7
+ <!-- Training -->
8
+ <div class="col">
9
+ <div class="card h-100 info-card">
10
+ <div class="card-header fw-bold">Training</div>
11
+ <div class="card-body">
12
+ <ul class="list-unstyled">
13
+ {%- for training in page.training %}
14
+ <li class="d-grid">
15
+ <a class="btn bg-white hover-primary text-start" href="{{ training.url }}">
16
+ <div class="row g-1">
17
+ <div class="col-2 d-flex align-items-center justify-content-center">
18
+ {%- if training.registry == "TeSS" %}
19
+ <img alt="TeSS logo" class="img-fluid h-40px" src="assets/img/tess_logo.svg">
20
+ {%- else %}
21
+ <i class="fas fa-external-link-alt text-primary fs-5"></i>
22
+ {%- endif %}
23
+ </div>
24
+ <div class="col-10 d-flex align-items-center">
25
+ <span class="text-start">{{training.name}}</span>
26
+ </div>
27
+ </div>
28
+ </a>
29
+ </li>
30
+ {%- endfor %}
31
+ </ul>
32
+ </div>
33
+ </div>
34
+ </div>
35
+ {%- endif %}
36
+ {%- if page.faircookbook or page.fairsharing or page.dsw %}
37
+ <!-- FAIR Cookbook and FAIRsharing -->
38
+ <div class="col">
39
+ <div class="card h-100 info-card">
40
+ <div class="card-header fw-bold">Links to other ELIXIR resources</div>
41
+ <div class="card-body">
42
+ <ul class="list-unstyled">
43
+ {%- if page.faircookbook %}
44
+ {%- for recipe in page.faircookbook %}
45
+ <li class="d-grid">
46
+ <a class="btn bg-white hover-primary text-start" data-bs-toggle="tooltip" data-bs-placement="right" title="FAIRCookbook" href="{{ recipe.url }}">
47
+ <div class="row g-1">
48
+ <div class="col-2 d-flex align-items-center justify-content-center">
49
+ <img alt="FAIRCookbook logo" class="img-fluid h-40px" src="assets/img/fairplus.svg">
50
+ </div>
51
+ <div class="col-10 d-flex align-items-center">
52
+ <span class="text-start">Step-by-step process for: {{recipe.name}}</span>
53
+ </div>
54
+ </div>
55
+ </a>
56
+ </li>
57
+ {%- endfor %}
58
+ {%- endif %}
59
+ {%- if page.dsw %}
60
+ {%- for question in page.dsw %}
61
+ <li class="d-grid">
62
+ <a class="btn bg-white hover-primary text-start" data-bs-toggle="tooltip" data-bs-placement="right" title="DSW" href="{{ site.dsw_deep_link_prefix | append: question.uuid }}">
63
+ <div class="row g-1">
64
+ <div class="col-2 d-flex align-items-center justify-content-center">
65
+ <img alt="DSW logo" class="img-fluid h-40px" src="assets/img/dsw-compact.svg">
66
+ </div>
67
+ <div class="col-10 d-flex align-items-center">
68
+ <span class="text-start">Support for DMP on: {{question.name}}</span>
69
+ </div>
70
+ </div>
71
+ </a>
72
+ </li>
73
+ {%- endfor %}
74
+ {%- endif %}
75
+ {%- if page.fairsharing %}
76
+ {%- for standard in page.fairsharing %}
77
+ <li class="d-grid">
78
+ <a class="btn bg-white hover-primary text-start" data-bs-toggle="tooltip" data-bs-placement="right" title="FAIRsharing" href="{{ standard.fairsharing }}">
79
+ <div class="row g-1">
80
+ <div class="col-2 d-flex align-items-center justify-content-center">
81
+ <img alt="fairsharing logo" class="img-fluid h-40px" src="assets/img/FAIRsharing-small.svg">
82
+ </div>
83
+ <div class="col-10 d-flex align-items-center">
84
+ <span class="text-start">FAIRsharing collection about: {{standard.title}}</span>
85
+ </div>
86
+ </div>
87
+ </a>
88
+ </li>
89
+ {%- endfor %}
90
+ {%- endif %}
91
+ </ul>
92
+ </div>
93
+ </div>
94
+ </div>
95
+ {%- endif %}
96
+ </div>
97
+ {%- endif %}