elixir-toolkit-theme 1.26.0 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +60 -25
- data/_includes/affiliation-tiles-page.html +1 -1
- data/_includes/contributor-carousel-selection.html +33 -10
- data/_includes/contributor-minitiles-page.html +8 -4
- data/_includes/contributor-tiles-all.html +24 -7
- data/_includes/footer.html +1 -1
- data/_includes/resource-table-all.html +25 -11
- data/_includes/resource-table-page.html +20 -9
- data/_includes/section-navigation-tiles-simple.html +1 -1
- data/_includes/section-navigation-tiles.html +1 -1
- data/_includes/sidebar.html +1 -1
- data/_includes/toc.html +7 -4
- data/_includes/topnav.html +6 -6
- data/_layouts/default.html +6 -10
- data/_layouts/page.html +37 -32
- data/_sass/_bootstrap_variables.scss +1 -3
- data/_sass/_variables.scss +0 -3
- data/assets/css/main.scss +164 -45
- data/assets/js/main.js +12 -1
- data/assets/js/toc.js +50 -47
- metadata +18 -4
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 50a883750f43ede5fd36322883070d37f2412df14e49a8f33f583a22db9754e5
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data.tar.gz: 3f1b7a3e937a1e8ca8d9cd0a5574091123f79683cb62754331a962f257465383
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 137897f2f78de213f470e7cc70b7b48919445bb7272566e73dfe43e0dc30b1dd7e43ede5b3d7d836a89dfb4cd955611bec4836a563ad6fba350cca16436a4f5f
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data.tar.gz: 667a09391c125561515a0dc32cd0ce558a5615b6f47052769b70fbd088bada7303f70a1dc13e2a7d7d00623d2be0f21daa1551a79077f1a19542b6c07968c04a
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data/README.md
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---
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permalink: /
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---
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[](https://badge.fury.io/rb/elixir-toolkit-theme) [](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/actions/workflows/jekyll.yml) [](https://zenodo.org/badge/latestdoi/421495867)
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@@ -19,30 +23,35 @@ Its key features:
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- Easy side navigation, top navigation and footer management
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- Mobile friendly
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- Create website sections with each section having its own sidebar
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- Out of the box search engine optimizations including schema.org attributes and many other
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- Support for Google Analytics and Plausible
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## Installation
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- Out of the box search engine optimizations including schema.org attributes and many other metadata attributes
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- Support for Google Analytics, Matomo and Plausible
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-
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## Enabling the theme on your Jekyll project
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The quickest way to use the elixir-toolkit-theme is
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The quickest way to use the elixir-toolkit-theme is setting it as a [remote theme](https://blog.github.com/2017-11-29-use-any-theme-with-github-pages/) in your `config.yml` file:
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```yaml
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme
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```
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You can lock it onto a specific version like using:
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```yaml
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@1.25.0
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```
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### Using Ruby Gems (alternative)
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Alternatively you can use the Ruby Gem of the theme (needed when using GitLab) by adding this line to your Jekyll site's Gemfile:
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```ruby
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gem "elixir-toolkit-theme"
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```
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You can lock it onto a specific version like this:
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```ruby
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gem "elixir-toolkit-theme", "~> 1.25.0"
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```
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And add this line to your Jekyll site's `_config.yml`:
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theme: elixir-toolkit-theme
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```
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##
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## Deployment
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### Via GitHub Actions
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1. Make sure you have a GitHub workflow file setup similar to the one in this repo at [.github/workflows/jekyll.yml](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/blob/main/.github/workflows/jekyll.yml).
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2. Go to Settings > Pages and enable GitHub Actions as a source
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3. Go to Environments > github-pages and remove the rule under Deployment branches if you want to deploy other branches than master or main via Workflow Dispatch (manually triggered action)
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### Via GitHub Pages
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This is the quickest way to deploy the elixir-toolkit-theme, but gives less flexibility and does not allow you to make use of the new way of tagging tools. Visit the [GitHub documentation](https://docs.github.com/en/pages/setting-up-a-github-pages-site-with-jekyll/) to find out more about how to setup GitHub pages.
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NOTE: This way of deploying does not support the tool-tag in the text of the markdown file to tag tools and resources.
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### Via GitLab Pages
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Add an extra `.gitlab-ci.yml` file in the root of the repo with:
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```yml
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image: ruby:2.7
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variables:
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JEKYLL_ENV: production
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before_script:
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- bundle install
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pages:
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stage: deploy
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script:
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- bundle exec jekyll build -d public
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artifacts:
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paths:
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- public
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only:
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- master
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```
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### Locally using Jekyll
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1. If not already present on your machine, install **ruby**.
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1. Install Jekyll
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If you have never installed or run a Jekyll site locally on your computer, follow these instructions to install Jekyll: [https://jekyllrb.com/docs/installation/](https://jekyllrb.com/docs/installation/)
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```
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gem install jekyll bundler
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Additional information can be found at the following link: [https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll](https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll)
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###
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### Locally using Docker
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If not already installed on your machine, install Docker. From the root of the `elixir-toolkit-theme` directory, run:
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```
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```sh
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docker run -it --rm -p [::1]:4000:4000 -v $PWD:/srv/jekyll jekyll/jekyll:latest /bin/bash -c "chmod a+w /srv/jekyll/Gemfile.lock && chmod 777 /srv/jekyll && bundle install && bundle exec jekyll serve --host 0.0.0.0"
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```
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- [ERIM Research Toolbox](https://eur-nl.github.io/erim-research-toolbox/)
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- [ELIXIR-UK Fellowship](https://elixir-uk-dash.github.io/rdmkit/)
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##
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## Dependencies
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This theme would not be possible without following open source projects:
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## License
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The theme is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
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{%- if page.affiliations and page.affiliations.size != 0 %}
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<span class="d-block h2-like fs-2">Affiliations</span>
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<div class="
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<div class="mt-4 d-flex flex-wrap gap-2">
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{%- assign affiliations = site.data.affiliations %}
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{%- assign page_affiliations = page.affiliations | sort %}
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{%- assign allcountries = site.data.countries %}
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{%- assign contributors = site.data.CONTRIBUTORS %}
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{%- assign nr = include.
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{%- assign nr = include.col | default: 5 %}
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{%- if include.custom %}
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{%- assign
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{%- assign allcontrstr = include.custom %}
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{%- elsif include.role %}
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{%- assign rolefilter = include.role | downcase %}
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{%- for contr in contributors %}
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{%- assign contrrole = contr[1]['role'] | downcase %}
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{%- if include.role == contrrole %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
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{%- else %}
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{%- assign allcontrstr = allcontrstr | append: contr[0] %}
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{%- endif %}
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{%- endif %}
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{%- endfor %}
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{%- else %}
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{%- for page in site.pages %}
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{%- if page.contributors and page.search_exclude != true %}
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{%- if page.contributors and page.search_exclude != true and page.contributors.size != 0 %}
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{%- assign pagecontr = page.contributors | join: ", " %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %}
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{%- endif %}
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{%- endfor %}
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{%- for contr in contributors %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
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{%- else %}
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{%- assign allcontrstr = allcontrstr | append: contr[0] %}
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{%- endif %}
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{%- endfor %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
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{%- endif %}
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{%- unless include.sort == false %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
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{%- else %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq %}
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{%- endunless %}
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<div id="contributors-carousel" class="carousel carousel-dark slide my-4" data-ride="carousel" data-bs-interval="7000">
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<div class="carousel-inner">
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{%- assign counter = 0 %}
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</div>
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{%- endif %}
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<div class="carousel-item {% if counter == 0 %}active{% endif %}">
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<div class="row row-cols-
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<div class="row row-cols-{{nr}} contributor-cards g-1 g-xl-4 ">
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{%- endif %}
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<div class="col">
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<div class="card h-100">
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{%- assign id = contributors[contributor].git | default: 'no_github' %}
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<div>
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<div class="position-relative">
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{%- if contributors[contributor].image_url %}
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<div class="p-3">
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<div class="ratio ratio-1x1">
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</div>
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{%- endif %}
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{%- endif %}
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{%- if contributors[contributor].role %}
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<span class="badge position-absolute top-0 end-0">{{ contributors[contributor].role | capitalize }}</span>
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{%- endif %}
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</div>
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<div class="card-body text-center py-0">
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<p class="card-title">{{ contributor }}</p>
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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<div class="card-footer">
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<div class="d-flex justify-content-center">
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<div class="d-flex justify-content-center gap-1 gap-md-2">
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{%- if contributors[contributor].git %}
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
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{%- endif %}
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{%- if contributors[contributor].email %}
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
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{%- endif %}
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{%- if contributors[contributor].orcid %}
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
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{%- endif %}
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</div>
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</div>
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<span class="d-block h2-like fs-2">Contributors</span>
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<div class="p-4 rounded mt-4 page-contributors d-flex flex-wrap gap-2">
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{%- assign contributors = site.data.CONTRIBUTORS %}
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{%- unless include.sort == false %}
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{%- assign page_contributors = page.contributors | sort %}
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{%- else %}
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{%- assign page_contributors = page.contributors %}
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{%- endunless %}
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{%- for contributor in page_contributors %}
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{%- assign id = contributors[contributor].git | default: 'no_github' %}
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<div class="dropup-center dropup d-inline-block">
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</div>
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<div class="card-footer">
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<div class="d-flex justify-content-center">
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<div class="d-flex justify-content-center gap-2">
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
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{%- if contributors[contributor].email %}
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
|
|
98
102
|
{%- endif %}
|
|
99
103
|
{%- if contributors[contributor].orcid %}
|
|
100
|
-
<
|
|
104
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
|
|
101
105
|
{%- endif %}
|
|
102
106
|
</div>
|
|
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107
|
</div>
|
|
@@ -1,6 +1,19 @@
|
|
|
1
1
|
{%- assign contributors = site.data.CONTRIBUTORS %}
|
|
2
|
+
{%- assign nr = include.col | default: 5 %}
|
|
2
3
|
{%- if include.custom %}
|
|
3
|
-
{%- assign
|
|
4
|
+
{%- assign allcontrstr = include.custom %}
|
|
5
|
+
{%- elsif include.role %}
|
|
6
|
+
{%- assign rolefilter = include.role | downcase %}
|
|
7
|
+
{%- for contr in contributors %}
|
|
8
|
+
{%- assign contrrole = contr[1]['role'] | downcase %}
|
|
9
|
+
{%- if include.role == contrrole %}
|
|
10
|
+
{%- if allcontrstr %}
|
|
11
|
+
{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
|
|
12
|
+
{%- else %}
|
|
13
|
+
{%- assign allcontrstr = allcontrstr | append: contr[0] %}
|
|
14
|
+
{%- endif %}
|
|
15
|
+
{%- endif %}
|
|
16
|
+
{%- endfor %}
|
|
4
17
|
{%- else %}
|
|
5
18
|
{%- for page in site.pages %}
|
|
6
19
|
{%- if page.contributors and page.search_exclude != true and page.contributors.size != 0 %}
|
|
@@ -19,9 +32,13 @@
|
|
|
19
32
|
{%- assign allcontrstr = allcontrstr | append: contr[0] %}
|
|
20
33
|
{%- endif %}
|
|
21
34
|
{%- endfor %}
|
|
22
|
-
{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
|
|
23
35
|
{%- endif %}
|
|
24
|
-
|
|
36
|
+
{%- unless include.sort == false %}
|
|
37
|
+
{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
|
|
38
|
+
{%- else %}
|
|
39
|
+
{%- assign allcontributors = allcontrstr | split: ", " | uniq %}
|
|
40
|
+
{%- endunless %}
|
|
41
|
+
<div class="row row-cols-2 row-cols-sm-3 row-cols-md-4 row-cols-xl-{{nr}} g-4 contributor-cards">
|
|
25
42
|
{%- for contributor in allcontributors %}
|
|
26
43
|
<div class="col">
|
|
27
44
|
<div class="card h-100">
|
|
@@ -65,15 +82,15 @@
|
|
|
65
82
|
</div>
|
|
66
83
|
{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
|
|
67
84
|
<div class="card-footer">
|
|
68
|
-
<div class="d-flex justify-content-center">
|
|
85
|
+
<div class="d-flex justify-content-center gap-2">
|
|
69
86
|
{%- if contributors[contributor].git %}
|
|
70
|
-
<
|
|
87
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
|
|
71
88
|
{%- endif %}
|
|
72
89
|
{%- if contributors[contributor].email %}
|
|
73
|
-
<
|
|
90
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
|
|
74
91
|
{%- endif %}
|
|
75
92
|
{%- if contributors[contributor].orcid %}
|
|
76
|
-
<
|
|
93
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
|
|
77
94
|
{%- endif %}
|
|
78
95
|
</div>
|
|
79
96
|
</div>
|
data/_includes/footer.html
CHANGED
|
@@ -11,7 +11,7 @@
|
|
|
11
11
|
{%- if column.title != nil %}
|
|
12
12
|
<span class="footer-title">{{column.title}}</span>
|
|
13
13
|
{%- endif %}
|
|
14
|
-
<ul class="mb-0">
|
|
14
|
+
<ul class="mb-0 list-unstyled">
|
|
15
15
|
{%- for link in column.children %}
|
|
16
16
|
{%- if link.url != nil and link.external_url == nil%}
|
|
17
17
|
<li><a href="{{ link.url | relative_url }}">{{link.url_text}}</a></li>
|
|
@@ -1,4 +1,8 @@
|
|
|
1
|
-
{%-
|
|
1
|
+
{%- if include.tag %}
|
|
2
|
+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
|
|
3
|
+
{%- else %}
|
|
4
|
+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
|
|
5
|
+
{%- endif %}
|
|
2
6
|
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
|
|
3
7
|
{%- unless tools.size == 0 or tools == nil %}
|
|
4
8
|
{%- if include.tag %}
|
|
@@ -24,13 +28,13 @@
|
|
|
24
28
|
</tr>
|
|
25
29
|
</thead>
|
|
26
30
|
<tbody>
|
|
27
|
-
{%- for tool in tools
|
|
31
|
+
{%- for tool in tools %}
|
|
28
32
|
<tr>
|
|
29
33
|
{%- assign instances_tool = 0 %}
|
|
30
34
|
{%- assign total_county_tools = 0 %}
|
|
31
35
|
{%- assign query = "related_pages." | append: page.type %}
|
|
32
36
|
{%- for country_page in country_pages %}
|
|
33
|
-
{%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.
|
|
37
|
+
{%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.id | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
34
38
|
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
35
39
|
{%- unless tool_matches.size == 0 %}
|
|
36
40
|
{%- assign total_county_tools = total_county_tools | plus: tool_matches.size %}
|
|
@@ -45,10 +49,11 @@
|
|
|
45
49
|
<td>{{tool.name}}</td>
|
|
46
50
|
{%- endif %}
|
|
47
51
|
<td>{{tool.description}}
|
|
48
|
-
{%- if instances_tool != 0 and total_county_tools != 0 and include.tag != nil
|
|
52
|
+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
|
|
53
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
49
54
|
<div class="d-block mt-1">
|
|
50
|
-
{%- if
|
|
51
|
-
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{
|
|
55
|
+
{%- if linked_tool %}
|
|
56
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
52
57
|
{%- endif %}
|
|
53
58
|
{%- if tool.how_to_access %}
|
|
54
59
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
@@ -65,7 +70,7 @@
|
|
|
65
70
|
{%- for tag in tool.related_pages %}
|
|
66
71
|
{%- unless tag == page.page_id %}
|
|
67
72
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
68
|
-
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
73
|
+
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
69
74
|
{%- endunless %}
|
|
70
75
|
{%- endfor %}
|
|
71
76
|
{%- endcapture %}
|
|
@@ -83,6 +88,9 @@
|
|
|
83
88
|
{%- if tool.registry.tess %}
|
|
84
89
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
85
90
|
{%- endif %}
|
|
91
|
+
{%- if tool.registry.europmc %}
|
|
92
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
93
|
+
{%- endif %}
|
|
86
94
|
</td>
|
|
87
95
|
</tr>
|
|
88
96
|
{%- endfor %}
|
|
@@ -94,9 +102,9 @@
|
|
|
94
102
|
{%- assign hide_ids = "resource_title" %}
|
|
95
103
|
{%- for country_page in country_pages %}
|
|
96
104
|
{%- if include.tag %}
|
|
97
|
-
{%- assign tool_matches = country_page.national_resources| where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
105
|
+
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag | sort_natural: "name" %}
|
|
98
106
|
{%- else %}
|
|
99
|
-
{%- assign tool_matches = country_page.national_resources %}
|
|
107
|
+
{%- assign tool_matches = country_page.national_resources | sort_natural: "name" %}
|
|
100
108
|
{%- endif %}
|
|
101
109
|
{%- for tool in tool_matches %}
|
|
102
110
|
{%- assign tool_id = tool.name | slugify %}
|
|
@@ -109,8 +117,11 @@
|
|
|
109
117
|
{%- endif %}
|
|
110
118
|
<td>{{tool.description | markdownify }}
|
|
111
119
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
120
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
112
121
|
<div class="d-block mt-1">
|
|
113
|
-
|
|
122
|
+
{%- if linked_tool %}
|
|
123
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
124
|
+
{%- endif %}
|
|
114
125
|
{%- if tool.how_to_access %}
|
|
115
126
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
116
127
|
{%- endif %}
|
|
@@ -124,7 +135,7 @@
|
|
|
124
135
|
{%- for tag in section[1] %}
|
|
125
136
|
{%- unless tag == page.page_id %}
|
|
126
137
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
127
|
-
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
138
|
+
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
128
139
|
{%- endunless %}
|
|
129
140
|
{%- endfor %}
|
|
130
141
|
{%- endunless %}
|
|
@@ -147,6 +158,9 @@
|
|
|
147
158
|
{%- if tool.registry.tess %}
|
|
148
159
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
149
160
|
{%- endif %}
|
|
161
|
+
{%- if tool.registry.europmc %}
|
|
162
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
163
|
+
{%- endif %}
|
|
150
164
|
</td>
|
|
151
165
|
</tr>
|
|
152
166
|
{%- endfor %}
|
|
@@ -29,8 +29,11 @@
|
|
|
29
29
|
{%- endif %}
|
|
30
30
|
<td>{{tool.description | markdownify }}
|
|
31
31
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
32
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
32
33
|
<div class="d-block mt-1">
|
|
33
|
-
|
|
34
|
+
{%- if linked_tool %}
|
|
35
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
36
|
+
{%- endif %}
|
|
34
37
|
{%- if tool.how_to_access %}
|
|
35
38
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
36
39
|
{%- endif %}
|
|
@@ -44,7 +47,7 @@
|
|
|
44
47
|
{%- for tag in section[1] %}
|
|
45
48
|
{%- unless tag == page.page_id %}
|
|
46
49
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
47
|
-
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
50
|
+
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
48
51
|
{%- endunless %}
|
|
49
52
|
{%- endfor %}
|
|
50
53
|
{%- endunless %}
|
|
@@ -67,6 +70,9 @@
|
|
|
67
70
|
{%- if tool.registry.tess %}
|
|
68
71
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
69
72
|
{%- endif %}
|
|
73
|
+
{%- if tool.registry.europmc %}
|
|
74
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
75
|
+
{%- endif %}
|
|
70
76
|
</td>
|
|
71
77
|
</tr>
|
|
72
78
|
{%- endfor %}
|
|
@@ -76,7 +82,7 @@
|
|
|
76
82
|
<div id="skip-tool-table-1"></div>
|
|
77
83
|
{%- endif %}
|
|
78
84
|
{%- if page.ref_to_main_resources %}
|
|
79
|
-
{%- assign
|
|
85
|
+
{%- assign tool_ids = page.ref_to_main_resources %}
|
|
80
86
|
<h3>{{page.title}} contributes to</h3>
|
|
81
87
|
<p>Institutions and organisations in {{page.title}} are actively involved in the development of the following tools and resources.</p>
|
|
82
88
|
<a class="visually-hidden-focusable" href='#skip-tool-table-2'>Skip tool table</a>
|
|
@@ -95,8 +101,8 @@
|
|
|
95
101
|
</tr>
|
|
96
102
|
</thead>
|
|
97
103
|
<tbody>
|
|
98
|
-
{%- for
|
|
99
|
-
{%- assign tool = site.data.tool_and_resource_list | where:"
|
|
104
|
+
{%- for tool_id in tool_ids | sort %}
|
|
105
|
+
{%- assign tool = site.data.tool_and_resource_list | where:"id", tool_id | first %}
|
|
100
106
|
<tr>
|
|
101
107
|
{% if tool.url %}
|
|
102
108
|
<td><a href="{{tool.url}}">{{tool.name}}</a>
|
|
@@ -106,9 +112,11 @@
|
|
|
106
112
|
{%- endif %}
|
|
107
113
|
<td>{{tool.description | markdownify }}
|
|
108
114
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
115
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
109
116
|
<div class="d-block mt-1">
|
|
110
|
-
|
|
111
|
-
{
|
|
117
|
+
{%- if linked_tool %}
|
|
118
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
119
|
+
{%- endif %} {%- if tool.how_to_access %}
|
|
112
120
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
113
121
|
{%- endif %}
|
|
114
122
|
</div>
|
|
@@ -118,7 +126,7 @@
|
|
|
118
126
|
{%- for tag in tool.related_pages %}
|
|
119
127
|
{%- unless tag == page.page_id %}
|
|
120
128
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
121
|
-
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
129
|
+
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
122
130
|
{%- endunless %}
|
|
123
131
|
{%- endfor %}
|
|
124
132
|
{%- endcapture %}
|
|
@@ -136,6 +144,9 @@
|
|
|
136
144
|
{%- if tool.registry.tess %}
|
|
137
145
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
138
146
|
{%- endif %}
|
|
147
|
+
{%- if tool.registry.europmc %}
|
|
148
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
149
|
+
{%- endif %}
|
|
139
150
|
</td>
|
|
140
151
|
</tr>
|
|
141
152
|
{%- endfor %}
|
|
@@ -143,4 +154,4 @@
|
|
|
143
154
|
</table>
|
|
144
155
|
</div>
|
|
145
156
|
<div id="skip-tool-table-2"></div>
|
|
146
|
-
{%- endif %}
|
|
157
|
+
{%- endif %}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{%- assign allcountries = site.data.countries %}
|
|
2
2
|
{%- assign except = include.except | split: ", " %}
|
|
3
|
-
<div class="row row-cols-1 row-cols-md-2 g-3 my-4 navigation-tiles">
|
|
3
|
+
<div class="row row-cols-1 row-cols-md-2 row-cols-lg-{{ include.col | default: 2 }} g-3 my-4 navigation-tiles">
|
|
4
4
|
{%- for current_page in site.pages | sorted %}
|
|
5
5
|
{%- if current_page.title and current_page.search_exclude != true and current_page.type == include.type %}
|
|
6
6
|
{%- unless except contains current_page.name %}
|
|
@@ -46,7 +46,7 @@
|
|
|
46
46
|
{%- endunless %}
|
|
47
47
|
</div>
|
|
48
48
|
{%- endunless %}
|
|
49
|
-
<div class="row row-cols-1 row-cols-md-2 g-4 mb-5 navigation-tiles">
|
|
49
|
+
<div class="row row-cols-1 row-cols-md-2 row-cols-lg-{{ include.col | default: 2 }} g-4 mb-5 navigation-tiles">
|
|
50
50
|
{%- for current_page in site.pages | sorted %}
|
|
51
51
|
{%- assign affiliations_classes = "" %}
|
|
52
52
|
{%- assign related_pages_classes = "" %}
|
data/_includes/sidebar.html
CHANGED
|
@@ -21,7 +21,7 @@
|
|
|
21
21
|
<a class="btn text-start d-block mb-1 sidebar-title disabled" aria-disabled="true">{{sidebar.title}} {{sidebar.version}}</a>
|
|
22
22
|
{%- endif %}
|
|
23
23
|
{%- endif %}
|
|
24
|
-
<ul class="list-unstyled mb-4
|
|
24
|
+
<ul class="list-unstyled mb-4">
|
|
25
25
|
{%- for folder in sidebar.subitems %}
|
|
26
26
|
{%- if page.url == folder.url %}
|
|
27
27
|
<li class="active{%- if folder.hr %} mt-3{% endif %}">
|
data/_includes/toc.html
CHANGED
|
@@ -1,8 +1,11 @@
|
|
|
1
|
+
{%- unless page.toc == false %}
|
|
1
2
|
<script>
|
|
2
3
|
$(document).ready(function () {
|
|
3
|
-
$('#toc').toc({ minimumHeaders: {{site.theme_variables.toc.min_headers | default: 2 }}, listType: 'ul', noBackToTopLinks: true, showSpeed: 0, headers: '{{site.theme_variables.toc.headers | default: 'main h2' }}' , title: '
|
|
4
|
+
$('#toc-contents').toc({ minimumHeaders: {{site.theme_variables.toc.min_headers | default: 2 }}, listType: 'ul', classes: { list: 'list-unstyled' }, noBackToTopLinks: true, showSpeed: 0, headers: '{{site.theme_variables.toc.headers | default: 'main h2' }}' , title: '<strong class="my-2">On this page</strong><hr class="my-2">' });
|
|
4
5
|
});
|
|
5
6
|
</script>
|
|
6
|
-
<
|
|
7
|
-
<
|
|
8
|
-
</
|
|
7
|
+
<button id="btn-toc-hide" class="btn bg-light d-lg-none hover-primary mb-3" type="button" data-bs-toggle="collapse" data-bs-target="#toc-contents" aria-expanded="true" aria-controls="toc-contents">
|
|
8
|
+
<i class="fa-solid fa-up-right-and-down-left-from-center me-2"></i>On this page
|
|
9
|
+
</button>
|
|
10
|
+
<nav id="toc-contents" class="collapse" aria-label="Table of contents"></nav>
|
|
11
|
+
{%- endunless %}
|