elixir-toolkit-theme 1.26.0 → 2.1.0
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- checksums.yaml +4 -4
- data/README.md +60 -25
- data/_includes/affiliation-tiles-page.html +1 -1
- data/_includes/contributor-carousel-selection.html +33 -10
- data/_includes/contributor-minitiles-page.html +8 -4
- data/_includes/contributor-tiles-all.html +24 -7
- data/_includes/footer.html +1 -1
- data/_includes/resource-table-all.html +25 -11
- data/_includes/resource-table-page.html +20 -9
- data/_includes/section-navigation-tiles-simple.html +1 -1
- data/_includes/section-navigation-tiles.html +1 -1
- data/_includes/sidebar.html +1 -1
- data/_includes/toc.html +7 -4
- data/_includes/topnav.html +6 -6
- data/_layouts/default.html +6 -10
- data/_layouts/page.html +37 -32
- data/_sass/_bootstrap_variables.scss +1 -3
- data/_sass/_variables.scss +0 -3
- data/assets/css/main.scss +164 -45
- data/assets/js/main.js +12 -1
- data/assets/js/toc.js +50 -47
- metadata +18 -4
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 50a883750f43ede5fd36322883070d37f2412df14e49a8f33f583a22db9754e5
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data.tar.gz: 3f1b7a3e937a1e8ca8d9cd0a5574091123f79683cb62754331a962f257465383
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 137897f2f78de213f470e7cc70b7b48919445bb7272566e73dfe43e0dc30b1dd7e43ede5b3d7d836a89dfb4cd955611bec4836a563ad6fba350cca16436a4f5f
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data.tar.gz: 667a09391c125561515a0dc32cd0ce558a5615b6f47052769b70fbd088bada7303f70a1dc13e2a7d7d00623d2be0f21daa1551a79077f1a19542b6c07968c04a
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data/README.md
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---
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permalink: /
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---
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[](https://badge.fury.io/rb/elixir-toolkit-theme) [](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/actions/workflows/jekyll.yml) [](https://zenodo.org/badge/latestdoi/421495867)
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@@ -19,30 +23,35 @@ Its key features:
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- Easy side navigation, top navigation and footer management
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- Mobile friendly
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- Create website sections with each section having its own sidebar
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- Out of the box search engine optimizations including schema.org attributes and many other
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- Support for Google Analytics and Plausible
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## Installation
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- Out of the box search engine optimizations including schema.org attributes and many other metadata attributes
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- Support for Google Analytics, Matomo and Plausible
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-
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## Enabling the theme on your Jekyll project
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The quickest way to use the elixir-toolkit-theme is
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The quickest way to use the elixir-toolkit-theme is setting it as a [remote theme](https://blog.github.com/2017-11-29-use-any-theme-with-github-pages/) in your `config.yml` file:
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```yaml
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme
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```
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You can lock it onto a specific version like using:
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```yaml
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remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@1.25.0
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```
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### Using Ruby Gems (alternative)
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Alternatively you can use the Ruby Gem of the theme (needed when using GitLab) by adding this line to your Jekyll site's Gemfile:
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```ruby
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gem "elixir-toolkit-theme"
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```
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You can lock it onto a specific version like this:
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```ruby
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gem "elixir-toolkit-theme", "~> 1.25.0"
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```
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And add this line to your Jekyll site's `_config.yml`:
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@@ -50,26 +59,53 @@ And add this line to your Jekyll site's `_config.yml`:
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theme: elixir-toolkit-theme
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```
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##
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## Deployment
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### Via GitHub Actions
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1. Make sure you have a GitHub workflow file setup similar to the one in this repo at [.github/workflows/jekyll.yml](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/blob/main/.github/workflows/jekyll.yml).
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2. Go to Settings > Pages and enable GitHub Actions as a source
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3. Go to Environments > github-pages and remove the rule under Deployment branches if you want to deploy other branches than master or main via Workflow Dispatch (manually triggered action)
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### Via GitHub Pages
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This is the quickest way to deploy the elixir-toolkit-theme, but gives less flexibility and does not allow you to make use of the new way of tagging tools. Visit the [GitHub documentation](https://docs.github.com/en/pages/setting-up-a-github-pages-site-with-jekyll/) to find out more about how to setup GitHub pages.
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NOTE: This way of deploying does not support the tool-tag in the text of the markdown file to tag tools and resources.
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### Via GitLab Pages
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Add an extra `.gitlab-ci.yml` file in the root of the repo with:
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```yml
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image: ruby:2.7
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-
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variables:
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JEKYLL_ENV: production
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before_script:
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- bundle install
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pages:
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stage: deploy
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script:
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- bundle exec jekyll build -d public
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artifacts:
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paths:
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- public
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only:
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- master
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```
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### Locally using Jekyll
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1. If not already present on your machine, install **ruby**.
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1. Install Jekyll
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If you have never installed or run a Jekyll site locally on your computer, follow these instructions to install Jekyll: [https://jekyllrb.com/docs/installation/](https://jekyllrb.com/docs/installation/)
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```
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gem install jekyll bundler
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Additional information can be found at the following link: [https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll](https://docs.github.com/en/free-pro-team@latest/github/working-with-github-pages/testing-your-github-pages-site-locally-with-jekyll)
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###
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### Locally using Docker
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If not already installed on your machine, install Docker. From the root of the `elixir-toolkit-theme` directory, run:
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```
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```sh
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docker run -it --rm -p [::1]:4000:4000 -v $PWD:/srv/jekyll jekyll/jekyll:latest /bin/bash -c "chmod a+w /srv/jekyll/Gemfile.lock && chmod 777 /srv/jekyll && bundle install && bundle exec jekyll serve --host 0.0.0.0"
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```
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@@ -113,7 +149,7 @@ This will start the docker container and serve the website locally. Make sure th
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- [ERIM Research Toolbox](https://eur-nl.github.io/erim-research-toolbox/)
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- [ELIXIR-UK Fellowship](https://elixir-uk-dash.github.io/rdmkit/)
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##
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## Dependencies
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This theme would not be possible without following open source projects:
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@@ -138,7 +174,6 @@ If you like our work, you can add following badge to the readme of your project:
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## License
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The theme is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
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{%- if page.affiliations and page.affiliations.size != 0 %}
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<span class="d-block h2-like fs-2">Affiliations</span>
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<div class="
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<div class="mt-4 d-flex flex-wrap gap-2">
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{%- assign affiliations = site.data.affiliations %}
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{%- assign page_affiliations = page.affiliations | sort %}
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{%- assign allcountries = site.data.countries %}
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{%- assign contributors = site.data.CONTRIBUTORS %}
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{%- assign nr = include.
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{%- assign nr = include.col | default: 5 %}
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{%- if include.custom %}
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{%- assign
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{%- assign allcontrstr = include.custom %}
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{%- elsif include.role %}
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{%- assign rolefilter = include.role | downcase %}
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{%- for contr in contributors %}
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{%- assign contrrole = contr[1]['role'] | downcase %}
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{%- if include.role == contrrole %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
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{%- else %}
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{%- assign allcontrstr = allcontrstr | append: contr[0] %}
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{%- endif %}
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{%- endif %}
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{%- endfor %}
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{%- else %}
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{%- for page in site.pages %}
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{%- if page.contributors and page.search_exclude != true %}
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{%- if page.contributors and page.search_exclude != true and page.contributors.size != 0 %}
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{%- assign pagecontr = page.contributors | join: ", " %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %}
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{%- endif %}
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{%- endfor %}
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{%- for contr in contributors %}
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{%- if allcontrstr %}
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{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
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{%- else %}
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{%- assign allcontrstr = allcontrstr | append: contr[0] %}
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{%- endif %}
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{%- endfor %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
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{%- endif %}
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{%- unless include.sort == false %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
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{%- else %}
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{%- assign allcontributors = allcontrstr | split: ", " | uniq %}
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{%- endunless %}
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<div id="contributors-carousel" class="carousel carousel-dark slide my-4" data-ride="carousel" data-bs-interval="7000">
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<div class="carousel-inner">
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{%- assign counter = 0 %}
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</div>
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{%- endif %}
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<div class="carousel-item {% if counter == 0 %}active{% endif %}">
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<div class="row row-cols-
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<div class="row row-cols-{{nr}} contributor-cards g-1 g-xl-4 ">
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{%- endif %}
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<div class="col">
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<div class="card h-100">
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{%- assign id = contributors[contributor].git | default: 'no_github' %}
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<div>
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<div class="position-relative">
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{%- if contributors[contributor].image_url %}
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<div class="p-3">
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<div class="ratio ratio-1x1">
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</div>
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{%- endif %}
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{%- endif %}
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{%- if contributors[contributor].role %}
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<span class="badge position-absolute top-0 end-0">{{ contributors[contributor].role | capitalize }}</span>
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{%- endif %}
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</div>
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<div class="card-body text-center py-0">
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<p class="card-title">{{ contributor }}</p>
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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<div class="card-footer">
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<div class="d-flex justify-content-center">
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<div class="d-flex justify-content-center gap-1 gap-md-2">
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{%- if contributors[contributor].git %}
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<
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
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{%- endif %}
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{%- if contributors[contributor].email %}
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<
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
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{%- endif %}
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{%- if contributors[contributor].orcid %}
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<
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
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{%- endif %}
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</div>
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</div>
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<span class="d-block h2-like fs-2">Contributors</span>
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<div class="p-4 rounded mt-4 page-contributors d-flex flex-wrap gap-2">
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{%- assign contributors = site.data.CONTRIBUTORS %}
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{%- unless include.sort == false %}
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{%- assign page_contributors = page.contributors | sort %}
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{%- else %}
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{%- assign page_contributors = page.contributors %}
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{%- endunless %}
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{%- for contributor in page_contributors %}
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{%- assign id = contributors[contributor].git | default: 'no_github' %}
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<div class="dropup-center dropup d-inline-block">
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@@ -89,15 +93,15 @@
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</div>
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{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
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<div class="card-footer">
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<div class="d-flex justify-content-center">
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<div class="d-flex justify-content-center gap-2">
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{%- if contributors[contributor].git %}
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-
<
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<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
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{%- endif %}
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{%- if contributors[contributor].email %}
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+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
|
|
98
102
|
{%- endif %}
|
|
99
103
|
{%- if contributors[contributor].orcid %}
|
|
100
|
-
<
|
|
104
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
|
|
101
105
|
{%- endif %}
|
|
102
106
|
</div>
|
|
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107
|
</div>
|
|
@@ -1,6 +1,19 @@
|
|
|
1
1
|
{%- assign contributors = site.data.CONTRIBUTORS %}
|
|
2
|
+
{%- assign nr = include.col | default: 5 %}
|
|
2
3
|
{%- if include.custom %}
|
|
3
|
-
{%- assign
|
|
4
|
+
{%- assign allcontrstr = include.custom %}
|
|
5
|
+
{%- elsif include.role %}
|
|
6
|
+
{%- assign rolefilter = include.role | downcase %}
|
|
7
|
+
{%- for contr in contributors %}
|
|
8
|
+
{%- assign contrrole = contr[1]['role'] | downcase %}
|
|
9
|
+
{%- if include.role == contrrole %}
|
|
10
|
+
{%- if allcontrstr %}
|
|
11
|
+
{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %}
|
|
12
|
+
{%- else %}
|
|
13
|
+
{%- assign allcontrstr = allcontrstr | append: contr[0] %}
|
|
14
|
+
{%- endif %}
|
|
15
|
+
{%- endif %}
|
|
16
|
+
{%- endfor %}
|
|
4
17
|
{%- else %}
|
|
5
18
|
{%- for page in site.pages %}
|
|
6
19
|
{%- if page.contributors and page.search_exclude != true and page.contributors.size != 0 %}
|
|
@@ -19,9 +32,13 @@
|
|
|
19
32
|
{%- assign allcontrstr = allcontrstr | append: contr[0] %}
|
|
20
33
|
{%- endif %}
|
|
21
34
|
{%- endfor %}
|
|
22
|
-
{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
|
|
23
35
|
{%- endif %}
|
|
24
|
-
|
|
36
|
+
{%- unless include.sort == false %}
|
|
37
|
+
{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %}
|
|
38
|
+
{%- else %}
|
|
39
|
+
{%- assign allcontributors = allcontrstr | split: ", " | uniq %}
|
|
40
|
+
{%- endunless %}
|
|
41
|
+
<div class="row row-cols-2 row-cols-sm-3 row-cols-md-4 row-cols-xl-{{nr}} g-4 contributor-cards">
|
|
25
42
|
{%- for contributor in allcontributors %}
|
|
26
43
|
<div class="col">
|
|
27
44
|
<div class="card h-100">
|
|
@@ -65,15 +82,15 @@
|
|
|
65
82
|
</div>
|
|
66
83
|
{%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
|
|
67
84
|
<div class="card-footer">
|
|
68
|
-
<div class="d-flex justify-content-center">
|
|
85
|
+
<div class="d-flex justify-content-center gap-2">
|
|
69
86
|
{%- if contributors[contributor].git %}
|
|
70
|
-
<
|
|
87
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a>
|
|
71
88
|
{%- endif %}
|
|
72
89
|
{%- if contributors[contributor].email %}
|
|
73
|
-
<
|
|
90
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a>
|
|
74
91
|
{%- endif %}
|
|
75
92
|
{%- if contributors[contributor].orcid %}
|
|
76
|
-
<
|
|
93
|
+
<a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a>
|
|
77
94
|
{%- endif %}
|
|
78
95
|
</div>
|
|
79
96
|
</div>
|
data/_includes/footer.html
CHANGED
|
@@ -11,7 +11,7 @@
|
|
|
11
11
|
{%- if column.title != nil %}
|
|
12
12
|
<span class="footer-title">{{column.title}}</span>
|
|
13
13
|
{%- endif %}
|
|
14
|
-
<ul class="mb-0">
|
|
14
|
+
<ul class="mb-0 list-unstyled">
|
|
15
15
|
{%- for link in column.children %}
|
|
16
16
|
{%- if link.url != nil and link.external_url == nil%}
|
|
17
17
|
<li><a href="{{ link.url | relative_url }}">{{link.url_text}}</a></li>
|
|
@@ -1,4 +1,8 @@
|
|
|
1
|
-
{%-
|
|
1
|
+
{%- if include.tag %}
|
|
2
|
+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
|
|
3
|
+
{%- else %}
|
|
4
|
+
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
|
|
5
|
+
{%- endif %}
|
|
2
6
|
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
|
|
3
7
|
{%- unless tools.size == 0 or tools == nil %}
|
|
4
8
|
{%- if include.tag %}
|
|
@@ -24,13 +28,13 @@
|
|
|
24
28
|
</tr>
|
|
25
29
|
</thead>
|
|
26
30
|
<tbody>
|
|
27
|
-
{%- for tool in tools
|
|
31
|
+
{%- for tool in tools %}
|
|
28
32
|
<tr>
|
|
29
33
|
{%- assign instances_tool = 0 %}
|
|
30
34
|
{%- assign total_county_tools = 0 %}
|
|
31
35
|
{%- assign query = "related_pages." | append: page.type %}
|
|
32
36
|
{%- for country_page in country_pages %}
|
|
33
|
-
{%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.
|
|
37
|
+
{%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.id | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
34
38
|
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
35
39
|
{%- unless tool_matches.size == 0 %}
|
|
36
40
|
{%- assign total_county_tools = total_county_tools | plus: tool_matches.size %}
|
|
@@ -45,10 +49,11 @@
|
|
|
45
49
|
<td>{{tool.name}}</td>
|
|
46
50
|
{%- endif %}
|
|
47
51
|
<td>{{tool.description}}
|
|
48
|
-
{%- if instances_tool != 0 and total_county_tools != 0 and include.tag != nil
|
|
52
|
+
{%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %}
|
|
53
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
49
54
|
<div class="d-block mt-1">
|
|
50
|
-
{%- if
|
|
51
|
-
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{
|
|
55
|
+
{%- if linked_tool %}
|
|
56
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
52
57
|
{%- endif %}
|
|
53
58
|
{%- if tool.how_to_access %}
|
|
54
59
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
@@ -65,7 +70,7 @@
|
|
|
65
70
|
{%- for tag in tool.related_pages %}
|
|
66
71
|
{%- unless tag == page.page_id %}
|
|
67
72
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
68
|
-
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
73
|
+
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
69
74
|
{%- endunless %}
|
|
70
75
|
{%- endfor %}
|
|
71
76
|
{%- endcapture %}
|
|
@@ -83,6 +88,9 @@
|
|
|
83
88
|
{%- if tool.registry.tess %}
|
|
84
89
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
85
90
|
{%- endif %}
|
|
91
|
+
{%- if tool.registry.europmc %}
|
|
92
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
93
|
+
{%- endif %}
|
|
86
94
|
</td>
|
|
87
95
|
</tr>
|
|
88
96
|
{%- endfor %}
|
|
@@ -94,9 +102,9 @@
|
|
|
94
102
|
{%- assign hide_ids = "resource_title" %}
|
|
95
103
|
{%- for country_page in country_pages %}
|
|
96
104
|
{%- if include.tag %}
|
|
97
|
-
{%- assign tool_matches = country_page.national_resources| where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
|
|
105
|
+
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag | sort_natural: "name" %}
|
|
98
106
|
{%- else %}
|
|
99
|
-
{%- assign tool_matches = country_page.national_resources %}
|
|
107
|
+
{%- assign tool_matches = country_page.national_resources | sort_natural: "name" %}
|
|
100
108
|
{%- endif %}
|
|
101
109
|
{%- for tool in tool_matches %}
|
|
102
110
|
{%- assign tool_id = tool.name | slugify %}
|
|
@@ -109,8 +117,11 @@
|
|
|
109
117
|
{%- endif %}
|
|
110
118
|
<td>{{tool.description | markdownify }}
|
|
111
119
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
120
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
112
121
|
<div class="d-block mt-1">
|
|
113
|
-
|
|
122
|
+
{%- if linked_tool %}
|
|
123
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
124
|
+
{%- endif %}
|
|
114
125
|
{%- if tool.how_to_access %}
|
|
115
126
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
116
127
|
{%- endif %}
|
|
@@ -124,7 +135,7 @@
|
|
|
124
135
|
{%- for tag in section[1] %}
|
|
125
136
|
{%- unless tag == page.page_id %}
|
|
126
137
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
127
|
-
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
138
|
+
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
128
139
|
{%- endunless %}
|
|
129
140
|
{%- endfor %}
|
|
130
141
|
{%- endunless %}
|
|
@@ -147,6 +158,9 @@
|
|
|
147
158
|
{%- if tool.registry.tess %}
|
|
148
159
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
149
160
|
{%- endif %}
|
|
161
|
+
{%- if tool.registry.europmc %}
|
|
162
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
163
|
+
{%- endif %}
|
|
150
164
|
</td>
|
|
151
165
|
</tr>
|
|
152
166
|
{%- endfor %}
|
|
@@ -29,8 +29,11 @@
|
|
|
29
29
|
{%- endif %}
|
|
30
30
|
<td>{{tool.description | markdownify }}
|
|
31
31
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
32
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
32
33
|
<div class="d-block mt-1">
|
|
33
|
-
|
|
34
|
+
{%- if linked_tool %}
|
|
35
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
36
|
+
{%- endif %}
|
|
34
37
|
{%- if tool.how_to_access %}
|
|
35
38
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
36
39
|
{%- endif %}
|
|
@@ -44,7 +47,7 @@
|
|
|
44
47
|
{%- for tag in section[1] %}
|
|
45
48
|
{%- unless tag == page.page_id %}
|
|
46
49
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
47
|
-
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
50
|
+
<a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
48
51
|
{%- endunless %}
|
|
49
52
|
{%- endfor %}
|
|
50
53
|
{%- endunless %}
|
|
@@ -67,6 +70,9 @@
|
|
|
67
70
|
{%- if tool.registry.tess %}
|
|
68
71
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
69
72
|
{%- endif %}
|
|
73
|
+
{%- if tool.registry.europmc %}
|
|
74
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
75
|
+
{%- endif %}
|
|
70
76
|
</td>
|
|
71
77
|
</tr>
|
|
72
78
|
{%- endfor %}
|
|
@@ -76,7 +82,7 @@
|
|
|
76
82
|
<div id="skip-tool-table-1"></div>
|
|
77
83
|
{%- endif %}
|
|
78
84
|
{%- if page.ref_to_main_resources %}
|
|
79
|
-
{%- assign
|
|
85
|
+
{%- assign tool_ids = page.ref_to_main_resources %}
|
|
80
86
|
<h3>{{page.title}} contributes to</h3>
|
|
81
87
|
<p>Institutions and organisations in {{page.title}} are actively involved in the development of the following tools and resources.</p>
|
|
82
88
|
<a class="visually-hidden-focusable" href='#skip-tool-table-2'>Skip tool table</a>
|
|
@@ -95,8 +101,8 @@
|
|
|
95
101
|
</tr>
|
|
96
102
|
</thead>
|
|
97
103
|
<tbody>
|
|
98
|
-
{%- for
|
|
99
|
-
{%- assign tool = site.data.tool_and_resource_list | where:"
|
|
104
|
+
{%- for tool_id in tool_ids | sort %}
|
|
105
|
+
{%- assign tool = site.data.tool_and_resource_list | where:"id", tool_id | first %}
|
|
100
106
|
<tr>
|
|
101
107
|
{% if tool.url %}
|
|
102
108
|
<td><a href="{{tool.url}}">{{tool.name}}</a>
|
|
@@ -106,9 +112,11 @@
|
|
|
106
112
|
{%- endif %}
|
|
107
113
|
<td>{{tool.description | markdownify }}
|
|
108
114
|
{%- if tool.instance_of or tool.how_to_access %}
|
|
115
|
+
{%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
|
|
109
116
|
<div class="d-block mt-1">
|
|
110
|
-
|
|
111
|
-
{
|
|
117
|
+
{%- if linked_tool %}
|
|
118
|
+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
|
|
119
|
+
{%- endif %} {%- if tool.how_to_access %}
|
|
112
120
|
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
|
113
121
|
{%- endif %}
|
|
114
122
|
</div>
|
|
@@ -118,7 +126,7 @@
|
|
|
118
126
|
{%- for tag in tool.related_pages %}
|
|
119
127
|
{%- unless tag == page.page_id %}
|
|
120
128
|
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
|
121
|
-
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
129
|
+
<a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
|
|
122
130
|
{%- endunless %}
|
|
123
131
|
{%- endfor %}
|
|
124
132
|
{%- endcapture %}
|
|
@@ -136,6 +144,9 @@
|
|
|
136
144
|
{%- if tool.registry.tess %}
|
|
137
145
|
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
138
146
|
{%- endif %}
|
|
147
|
+
{%- if tool.registry.europmc %}
|
|
148
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
|
|
149
|
+
{%- endif %}
|
|
139
150
|
</td>
|
|
140
151
|
</tr>
|
|
141
152
|
{%- endfor %}
|
|
@@ -143,4 +154,4 @@
|
|
|
143
154
|
</table>
|
|
144
155
|
</div>
|
|
145
156
|
<div id="skip-tool-table-2"></div>
|
|
146
|
-
{%- endif %}
|
|
157
|
+
{%- endif %}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{%- assign allcountries = site.data.countries %}
|
|
2
2
|
{%- assign except = include.except | split: ", " %}
|
|
3
|
-
<div class="row row-cols-1 row-cols-md-2 g-3 my-4 navigation-tiles">
|
|
3
|
+
<div class="row row-cols-1 row-cols-md-2 row-cols-lg-{{ include.col | default: 2 }} g-3 my-4 navigation-tiles">
|
|
4
4
|
{%- for current_page in site.pages | sorted %}
|
|
5
5
|
{%- if current_page.title and current_page.search_exclude != true and current_page.type == include.type %}
|
|
6
6
|
{%- unless except contains current_page.name %}
|
|
@@ -46,7 +46,7 @@
|
|
|
46
46
|
{%- endunless %}
|
|
47
47
|
</div>
|
|
48
48
|
{%- endunless %}
|
|
49
|
-
<div class="row row-cols-1 row-cols-md-2 g-4 mb-5 navigation-tiles">
|
|
49
|
+
<div class="row row-cols-1 row-cols-md-2 row-cols-lg-{{ include.col | default: 2 }} g-4 mb-5 navigation-tiles">
|
|
50
50
|
{%- for current_page in site.pages | sorted %}
|
|
51
51
|
{%- assign affiliations_classes = "" %}
|
|
52
52
|
{%- assign related_pages_classes = "" %}
|
data/_includes/sidebar.html
CHANGED
|
@@ -21,7 +21,7 @@
|
|
|
21
21
|
<a class="btn text-start d-block mb-1 sidebar-title disabled" aria-disabled="true">{{sidebar.title}} {{sidebar.version}}</a>
|
|
22
22
|
{%- endif %}
|
|
23
23
|
{%- endif %}
|
|
24
|
-
<ul class="list-unstyled mb-4
|
|
24
|
+
<ul class="list-unstyled mb-4">
|
|
25
25
|
{%- for folder in sidebar.subitems %}
|
|
26
26
|
{%- if page.url == folder.url %}
|
|
27
27
|
<li class="active{%- if folder.hr %} mt-3{% endif %}">
|
data/_includes/toc.html
CHANGED
|
@@ -1,8 +1,11 @@
|
|
|
1
|
+
{%- unless page.toc == false %}
|
|
1
2
|
<script>
|
|
2
3
|
$(document).ready(function () {
|
|
3
|
-
$('#toc').toc({ minimumHeaders: {{site.theme_variables.toc.min_headers | default: 2 }}, listType: 'ul', noBackToTopLinks: true, showSpeed: 0, headers: '{{site.theme_variables.toc.headers | default: 'main h2' }}' , title: '
|
|
4
|
+
$('#toc-contents').toc({ minimumHeaders: {{site.theme_variables.toc.min_headers | default: 2 }}, listType: 'ul', classes: { list: 'list-unstyled' }, noBackToTopLinks: true, showSpeed: 0, headers: '{{site.theme_variables.toc.headers | default: 'main h2' }}' , title: '<strong class="my-2">On this page</strong><hr class="my-2">' });
|
|
4
5
|
});
|
|
5
6
|
</script>
|
|
6
|
-
<
|
|
7
|
-
<
|
|
8
|
-
</
|
|
7
|
+
<button id="btn-toc-hide" class="btn bg-light d-lg-none hover-primary mb-3" type="button" data-bs-toggle="collapse" data-bs-target="#toc-contents" aria-expanded="true" aria-controls="toc-contents">
|
|
8
|
+
<i class="fa-solid fa-up-right-and-down-left-from-center me-2"></i>On this page
|
|
9
|
+
</button>
|
|
10
|
+
<nav id="toc-contents" class="collapse" aria-label="Table of contents"></nav>
|
|
11
|
+
{%- endunless %}
|