elixir-toolkit-theme 1.16.0 → 1.17.0
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- checksums.yaml +4 -4
- data/_includes/head.html +10 -2
- data/_includes/resource-table-all.html +38 -15
- data/_includes/resource-table-page.html +96 -7
- data/_includes/training-table-all.html +1 -1
- data/assets/css/main.scss +3 -7
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: faa89cf0a705783f323a0752072a8e207c05a0aa2af59350dd048707bd56fa93
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4
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+
data.tar.gz: cd5d72045a94edecdc128ecc085d0aa1e276c9da7abd1c14f062694f7ae6f790
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: ae9c134c870219a3c626069f6ecfac20840b6d8d3e44b800f69dc859ac61d8d8eb1d5fc6e9d57bf4bf9a4210ca33ba6069b0058abf16d78c5223a5be9a9caf24
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7
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+
data.tar.gz: 7a912281fd2e2cdffff99a9de4525a66336abaf03d23959aaed7c6ff5b2261eba7ca6f7ec97727b89d8735568536c22c19b1a430ba365625f421bb4dfb7eefc6
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data/_includes/head.html
CHANGED
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@@ -6,9 +6,17 @@
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6
6
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{%- capture keywords %}
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7
7
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{%- if page.related_pages %}
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{%- for section in page.related_pages %}
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9
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-
{%- unless section[1] == nil %}
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-
{%-
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9
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+
{%- unless section[1] == nil %}
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10
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{%- for keywordstr in section[1] %}
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11
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{%- assign keywordpage = site.pages | where: "page_id", keywordstr | first %}
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{%- if allkeywords %}
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{%- assign allkeywords = allkeywords | append: ", " | append: keywordstr | append: ", " | append: keywordpage.title %}
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{%- else %}
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{%- assign allkeywords = allkeywords | append: keywordstr | append: ", " | append: keywordpage.title %}
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16
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{%- endif %}
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{%- endfor %}
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{%- endunless %}
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{%- endfor %}{{allkeywords}}
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{%- endif %}
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{%- endcapture %}
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<meta name="keywords" content="{{keywords}}">
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@@ -1,12 +1,12 @@
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1
1
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{%- assign tools = site.data.tool_and_resource_list | where:"related_pages", include.tag %}
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2
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-
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.
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2
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+
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
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3
3
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{%- unless tools.size == 0 %}
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4
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{%- if include.tag %}
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5
5
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<h2>Relevant tools and resources</h2>
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{%- endif %}
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7
7
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<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
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8
8
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<div class="table-responsive mt-4 mb-5">
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9
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-
<table
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9
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+
<table class="tooltable table display">
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10
10
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<thead>
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11
11
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<tr class="text-nowrap">
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12
12
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<th>Tool or resource {%- if include.tag -%}
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@@ -26,12 +26,12 @@
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26
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<tbody>
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27
27
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{%- for tool in tools | sort %}
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28
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<tr>
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29
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-
{%- assign total_county_tools = 0 %}
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30
29
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{%- assign instances_tool = 0 %}
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30
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+
{%- assign total_county_tools = 0 %}
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31
31
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{%- assign query = "related_pages." | append: page.type %}
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32
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{%- for country_page in country_pages %}
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33
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-
{%- assign instance_matches = country_page.
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34
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-
{%- assign tool_matches = country_page.
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33
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+
{%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.name | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
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34
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+
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
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{%- unless tool_matches.size == 0 %}
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{%- assign total_county_tools = total_county_tools | plus: tool_matches.size %}
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{%- endunless %}
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@@ -39,17 +39,27 @@
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{%- assign instances_tool = instances_tool | plus: instance_matches.size %}
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{%- endunless %}
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{%- endfor %}
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-
{% if tool.
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-
<td><a href="{{tool.
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+
{% if tool.url %}
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43
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+
<td><a href="{{tool.url}}">{{tool.name}}</a></td>
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{%- else %}
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<td>{{tool.name}}</td>
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{%- endif %}
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<td>{{tool.description}}
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48
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-
{%-
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-
<
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50
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-
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51
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-
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52
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-
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48
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+
{%- if instances_tool != 0 and total_county_tools != 0 and include.tag != nil or tool.instance_of or tool.how_to_access %}
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49
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+
<div class="d-block mt-1">
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50
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+
{%- if tool.instance_of %}
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51
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+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
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+
{%- endif %}
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{%- if tool.how_to_access %}
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+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
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55
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+
{%- endif %}
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56
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+
{%- unless instances_tool == 0 or total_county_tools == 0 or include.tag == nil %}
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57
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+
<a href="#national-resources-button">
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58
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+
<span class="badge text-white bg-primary"><i class="fa-solid fa-arrow-circle-down me-2"></i>Different instances available</span>
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59
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+
</a>
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60
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+
{%- endunless %}
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61
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+
</div>
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62
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+
{%- endif %}
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53
63
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</td>
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54
64
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{%- capture related_pages %}
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55
65
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{%- for tag in tool.related_pages %}
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@@ -84,9 +94,9 @@
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84
94
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{%- assign hide_ids = "resource_title" %}
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85
95
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{%- for country_page in country_pages %}
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86
96
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{%- if include.tag %}
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87
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-
{%- assign tool_matches = country_page.
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|
97
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+
{%- assign tool_matches = country_page.national_resources| where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
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88
98
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{%- else %}
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89
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-
{%- assign tool_matches = country_page.
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|
99
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+
{%- assign tool_matches = country_page.national_resources %}
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90
100
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{%- endif %}
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91
101
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{%- for tool in tool_matches %}
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92
102
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{%- assign tool_id = tool.name | slugify %}
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@@ -124,7 +134,20 @@
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124
134
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{%- else %}
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125
135
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<td></td>
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126
136
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{%- endif %}
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127
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-
<td
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137
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+
<td>
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138
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+
{%- if tool.registry.biotools %}
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139
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+
<a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
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+
{%- endif %}
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141
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+
{%- if tool.registry.fairsharing %}
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142
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<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
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143
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+
{%- endif %}
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144
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+
{%- if tool.registry.fairsharing-coll %}
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145
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<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
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146
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+
{%- endif %}
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147
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+
{%- if tool.registry.tess %}
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148
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+
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
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149
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+
{%- endif %}
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150
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+
</td>
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128
151
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</tr>
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152
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{%- endfor %}
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{%- endfor %}
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@@ -1,14 +1,21 @@
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1
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-
{%- if page.
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2
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-
{%- assign tools = page.
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3
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-
<h2>
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4
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-
<
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1
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+
{%- if page.national_resources %}
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2
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{%- assign tools = page.national_resources %}
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3
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+
<h2>Tools and resources</h2>
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4
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<h3>Tailored to users in {{page.title}}</h3>
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5
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<p>Developed and/or deployed by institutions and organisations in {{page.title}}.</p>
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<a class="visually-hidden-focusable" href='#skip-tool-table-1'>Skip tool table</a>
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5
7
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<div class="table-responsive mt-4 mb-5">
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6
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-
<table
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8
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+
<table class="tooltable table display">
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7
9
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<thead>
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8
10
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<tr class="text-nowrap">
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11
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<th>Resource</th>
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<th>Description</th>
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11
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<th>Related pages</th>
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<th>Registry
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<a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
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<i class="fa-solid fa-info-circle"></i>
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</a>
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</th>
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</tr>
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</thead>
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14
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<tbody>
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@@ -47,11 +54,93 @@
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{%- else %}
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<td></td>
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49
56
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{%- endif %}
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+
<td>
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+
{%- if tool.registry.biotools %}
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59
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+
<a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
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+
{%- endif %}
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+
{%- if tool.registry.fairsharing %}
|
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<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
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+
{%- endif %}
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+
{%- if tool.registry.fairsharing-coll %}
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<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
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66
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+
{%- endif %}
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67
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+
{%- if tool.registry.tess %}
|
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68
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+
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
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69
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+
{%- endif %}
|
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70
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+
</td>
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50
71
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</tr>
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51
72
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{%- endfor %}
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52
73
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</tbody>
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53
74
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</table>
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54
75
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</div>
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55
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-
<div id="skip-tool-table"></div>
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56
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-
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76
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+
<div id="skip-tool-table-1"></div>
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57
77
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{%- endif %}
|
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78
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+
{%- if page.ref_to_main_resources %}
|
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79
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+
{%- assign tool_names = page.ref_to_main_resources %}
|
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80
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+
<h3>{{page.title}} contributes to</h3>
|
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81
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+
<p>Institutions and organisations in {{page.title}} are actively involved in the development of the following tools and resources.</p>
|
|
82
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+
<a class="visually-hidden-focusable" href='#skip-tool-table-2'>Skip tool table</a>
|
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83
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+
<div class="table-responsive mt-4 mb-5">
|
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84
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+
<table class="tooltable table display">
|
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85
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+
<thead>
|
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86
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+
<tr class="text-nowrap">
|
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87
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+
<th>Resource</th>
|
|
88
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+
<th>Description</th>
|
|
89
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+
<th>Related pages</th>
|
|
90
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+
<th>Registry
|
|
91
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+
<a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
|
|
92
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+
<i class="fa-solid fa-info-circle"></i>
|
|
93
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+
</a>
|
|
94
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+
</th>
|
|
95
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+
</tr>
|
|
96
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+
</thead>
|
|
97
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+
<tbody>
|
|
98
|
+
{%- for tool_name in tool_names | sort %}
|
|
99
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+
{%- assign tool = site.data.tool_and_resource_list | where:"name", tool_name | first %}
|
|
100
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+
<tr>
|
|
101
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+
{% if tool.url %}
|
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102
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+
<td><a href="{{tool.url}}">{{tool.name}}</a>
|
|
103
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+
</td>
|
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104
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+
{%- else %}
|
|
105
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+
<td>{{tool.name}}</td>
|
|
106
|
+
{%- endif %}
|
|
107
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+
<td>{{tool.description | markdownify }}
|
|
108
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+
{%- if tool.instance_of or tool.how_to_access %}
|
|
109
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+
<div class="d-block mt-1">
|
|
110
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+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
|
|
111
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+
{%- if tool.how_to_access %}
|
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112
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+
<span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
|
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113
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+
{%- endif %}
|
|
114
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+
</div>
|
|
115
|
+
{%- endif %}
|
|
116
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+
</td>
|
|
117
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+
{%- capture related_pages %}
|
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118
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+
{%- for tag in tool.related_pages %}
|
|
119
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+
{%- unless tag == page.page_id %}
|
|
120
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+
{%- assign related_page = site.pages | where:"page_id",tag | first %}
|
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121
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+
<a href="{{related_page.url | relative_url }}"><span class="badge default-badge">{{related_page.title}}</span></a>
|
|
122
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+
{%- endunless %}
|
|
123
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+
{%- endfor %}
|
|
124
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+
{%- endcapture %}
|
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125
|
+
<td>{{related_pages}}</td>
|
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126
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+
<td>
|
|
127
|
+
{%- if tool.registry.biotools %}
|
|
128
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
|
|
129
|
+
{%- endif %}
|
|
130
|
+
{%- if tool.registry.fairsharing %}
|
|
131
|
+
<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
|
|
132
|
+
{%- endif %}
|
|
133
|
+
{%- if tool.registry.fairsharing-coll %}
|
|
134
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+
<a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
|
|
135
|
+
{%- endif %}
|
|
136
|
+
{%- if tool.registry.tess %}
|
|
137
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+
<a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
|
|
138
|
+
{%- endif %}
|
|
139
|
+
</td>
|
|
140
|
+
</tr>
|
|
141
|
+
{%- endfor %}
|
|
142
|
+
</tbody>
|
|
143
|
+
</table>
|
|
144
|
+
</div>
|
|
145
|
+
<div id="skip-tool-table-2"></div>
|
|
146
|
+
{%- endif %}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
|
|
2
2
|
<div class="table-responsive mt-4 mb-5">
|
|
3
|
-
<table
|
|
3
|
+
<table class="trainingtable table display">
|
|
4
4
|
<thead>
|
|
5
5
|
<tr class="text-nowrap">
|
|
6
6
|
<th>Name
|
data/assets/css/main.scss
CHANGED
|
@@ -39,10 +39,6 @@ main {
|
|
|
39
39
|
margin-top: $spacer * 1.5;
|
|
40
40
|
}
|
|
41
41
|
|
|
42
|
-
h2+h3 {
|
|
43
|
-
margin-top: $spacer * 0.5;
|
|
44
|
-
}
|
|
45
|
-
|
|
46
42
|
h3+h4 {
|
|
47
43
|
margin-top: $spacer * 0.25;
|
|
48
44
|
}
|
|
@@ -432,7 +428,7 @@ table {
|
|
|
432
428
|
|
|
433
429
|
// Tool table column width optimizations
|
|
434
430
|
|
|
435
|
-
|
|
431
|
+
.tooltable {
|
|
436
432
|
tr th:nth-child(1) {
|
|
437
433
|
width: 25%;
|
|
438
434
|
}
|
|
@@ -450,8 +446,8 @@ table {
|
|
|
450
446
|
}
|
|
451
447
|
}
|
|
452
448
|
|
|
453
|
-
|
|
454
|
-
|
|
449
|
+
.tooltable td:nth-child(1) a,
|
|
450
|
+
.trainingtable td:nth-child(1) a {
|
|
455
451
|
font-weight: bold;
|
|
456
452
|
}
|
|
457
453
|
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: elixir-toolkit-theme
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.
|
|
4
|
+
version: 1.17.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- bedroesb
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2022-
|
|
11
|
+
date: 2022-06-13 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: jekyll
|