elixir-toolkit-theme 1.13.0 → 1.15.1

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: 7d24d9eff95e370fd1c7d623b1e30c50452bc779d0145b45633aa02dc50cb2b7
+  metadata.gz: 5116818f824c43ac6772574ec0355a9f315305c81262063ea3af0cb25621aa0a
+  data.tar.gz: 6e6bc17368378dd393fedd8b3512ab78ac55f067b8fba8b7ce881a2bb87a891c
 SHA512:
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-  data.tar.gz: cb05a2d704b22bd2dc9a7d6dc794f3594d666bbb0ed5fab8df4c76a056c21b5a94522e74c81ce9132a524ce627b118694e23d73f39127561f1871d6a9b7102ff
+  metadata.gz: 7f0a27be3b8dd0b2a85ea97d7040c214ab5d6a8a97c269a3d56dc942c3cd11e923fb0203e8996bdf5a6d44d0cbd74db604735ec34d54fa89f92c4dbe26dd818b
+  data.tar.gz: 6281320307692f8c0b7b953b12a3d34bf39477832f13f95aa967441c19dd202d738e54f43eecf39ce644c9ec1d35a01e2a91ab5fa617ee31804e56441dadf3d3

data/README.md

@@ -120,6 +120,17 @@ This theme would not be possible without following open source projects:
 - [Font-Awesome](https://github.com/FortAwesome/Font-Awesome) - The famous icon library
 - [flag-icons](https://github.com/lipis/flag-icons) - A curated collection of all country flags in SVG + css integration
 
+## Attribution
+
+If you like our work, you can add following badge to the readme of your project:
+```
+[![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
+```
+[![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
+
+
+
+
 ## License
 
 The theme is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

data/_includes/affiliation-tiles-selection.html

@@ -1,11 +1,11 @@
 {%- assign alllogos = site.data.affiliations %}
-<div class="affiliation-tiles row row-cols-2 row-cols-sm-3 row-cols-md-4 g-5 my-3">
+<div class="affiliation-tiles row row-cols-2 row-cols-sm-3 row-cols-md-4 g-4 my-3">
   {%- assign filtered_logos = alllogos | where: "type", include.type %}
   {%- for affiliation in filtered_logos %}
   {%- if affiliation.image_url and affiliation.expose == true %}
   <div class="col">
     <div class="card h-100 border-0">
-      <div class="my-auto">
+      <div class="my-auto d-flex justify-content-center">
         {% if affiliation.url %}<a href="{{ affiliation.url }}">{% endif %}<img class="rounded" src="{{ affiliation.image_url | relative_url }}" alt="{{ affiliation.name }}">{%- if affiliation.url %}</a>{% endif %}
       </div>
     </div>

data/_includes/callout.html

@@ -1,9 +1,9 @@
 {%- if include.type == "tip" %}
-<div markdown="span" class="alert alert-success" role="alert"><i class="fas fa-check-square"></i> <b>Tip:</b> {{include.content}}</div>
+<div markdown="span" class="alert alert-success" role="alert"><i class="fa-solid fa-check-square"></i> <b>Tip:</b> {{include.content}}</div>
 {%- elsif include.type == "important" %}
-<div markdown="span" class="alert alert-warning" role="alert"><i class="fas fa-exclamation-triangle"></i> <b>Important:</b> {{include.content}}</div>
+<div markdown="span" class="alert alert-warning" role="alert"><i class="fa-solid fa-exclamation-triangle"></i> <b>Important:</b> {{include.content}}</div>
 {%- elsif include.type == "note" %}
-<div markdown="span" class="alert alert-info" role="alert"><i class="fas fa-info-circle"></i> <b>Note:</b> {{include.content}}</div>
+<div markdown="span" class="alert alert-info" role="alert"><i class="fa-solid fa-info-circle"></i> <b>Note:</b> {{include.content}}</div>
 {%- elsif include.type == "warning" %}
-<div markdown="span" class="alert alert-danger" role="alert"><i class="fas fa-exclamation-circle"></i> <b>Warning:</b> {{include.content}}</div>
+<div markdown="span" class="alert alert-danger" role="alert"><i class="fa-solid fa-exclamation-circle"></i> <b>Warning:</b> {{include.content}}</div>
 {%- endif %}

data/_includes/contributor-carousel-selection.html

@@ -51,13 +51,13 @@
                     <div class="card-footer">
                         <div class="d-flex justify-content-center">
                             {%- if contributors[contributor].git %}
-                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
+                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
                             {%- endif %}
                             {%- if contributors[contributor].email %}
-                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
+                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
                             {%- endif %}
                             {%- if contributors[contributor].orcid %}
-                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
+                            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
                             {%- endif %}
                         </div>
                     </div>

data/_includes/contributor-minitiles-page.html

@@ -6,27 +6,43 @@
     {%- for contributor in page_contributors %}
     {%- assign id = contributors[contributor].git | default: 'no_github' %}
     {%- capture html_code %}
-    {%- assign stripped_name = contributor | replace: "'", " " %}
-    <div class="d-flex justify-content-center">
-        {%- if contributors[contributor].image_url %}
-        <img class="img-fluid rounded-circle contributor-img" src="{{ contributors[contributor].image_url }}" alt="Avatar of the contributor {{ stripped_name }}">
-        {%- else %}
-        <img class="img-fluid rounded-circle contributor-img" src="https://avatars.githubusercontent.com/{{ id }}" alt="Avatar of the contributor {{ stripped_name }}">
-        {%- endif %}
-    </div>
-    <div class="d-flex mt-3 justify-content-center">
-        {%- if contributors[contributor].git %}
-        <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
-        {%- endif %}
-        {%- if contributors[contributor].email %}
-        <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
-        {%- endif %}
-        {%- if contributors[contributor].orcid %}
-        <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
+    {%- assign stripped_name = contributor | replace: "'", "’" %}
+    <div class="card bg-white">
+        {%- assign id = contributors[contributor].git | default: 'no_github' %}
+        <div class="position-relative d-flex justify-content-center">
+          {%- if contributors[contributor].image_url %}
+          <img src="{{ contributors[contributor].image_url }}" class="card-img-top p-3 rounded-circle contributor-img" alt="{{ stripped_name }}">
+          {%- else %}
+          <img src="https://avatars.githubusercontent.com/{{id}}" class="card-img-top p-3 rounded-circle contributor-img" alt="{{ stripped_name }}">
+          {%- endif %}
+          {%- if contributors[contributor].role %}
+          <span class="badge position-absolute top-0 end-0">{{ contributors[contributor].role | capitalize }}</span>
+          {%- endif %}
+        </div>
+        <div class="card-body text-center py-0">
+          <p class="card-title">{{ stripped_name }}</p>
+          {%- if contributors[contributor].affiliation %}
+          <p class="card-affiliation">{{ contributors[contributor].affiliation | replace: "'", "’" }}</p>
+          {%- endif %}
+        </div>
+        {%- if contributors[contributor].git or contributors[contributor].email or contributors[contributor].orcid %}
+        <div class="card-footer bg-dark">
+          <div class="d-flex justify-content-center">
+            {%- if contributors[contributor].git %}
+            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
+            {%- endif %}
+            {%- if contributors[contributor].email %}
+            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
+            {%- endif %}
+            {%- if contributors[contributor].orcid %}
+            <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
+            {%- endif %}
+          </div>
+        </div>
         {%- endif %}
-    </div>
+      </div>
     {%- endcapture %}
-    <a tabindex="0" role="button" class="btn btn-sm contributor-link hover-primary m-1 position-relative" data-bs-trigger="focus" data-bs-html="true" data-bs-container="body" data-bs-toggle="popover" data-bs-placement="top" data-bs-content='{{html_code}}' title="{{contributor}}">
+    <a tabindex="0" role="button" class="btn btn-sm contributor-link hover-primary m-1 position-relative" data-bs-html="true" data-bs-trigger="focus" data-bs-container="body" data-bs-template='<div class="popover shadow border-0 contributor-cards" role="tooltip"><div class="popover-body p-0"></div></div>' data-bs-toggle="popover" data-bs-placement="top" data-bs-content='{{html_code}}'>
         <div class="d-flex align-items-center">
             <div class="flex-shrink-0">
                 {%- if contributors[contributor].image_url %}
@@ -44,7 +60,7 @@
         {%- if coordinator == contributor %}
         <div class="position-absolute top-0 start-100 translate-middle">
             <div class="rounded-circle coordinator-crown">
-                <i class="fa fa-crown"></i>
+                <i class="fa-solid fa-crown"></i>
             </div>
         </div>
         {%- endif %}

data/_includes/contributor-tiles-all.html

@@ -46,13 +46,13 @@
       <div class="card-footer">
         <div class="d-flex justify-content-center">
           {%- if contributors[contributor].git %}
-          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
+          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
           {%- endif %}
           {%- if contributors[contributor].email %}
-          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
+          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
           {%- endif %}
           {%- if contributors[contributor].orcid %}
-          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
+          <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
           {%- endif %}
         </div>
       </div>

data/_includes/cookie-popup.html

@@ -1,11 +1,15 @@
 {%- if site.gtag %}
 <!-- START Bootstrap-Cookie-Alert -->
 <div class="alert text-center cookiealert rounded-0" role="alert">
-    We use cookies to ensure you get the best experience on our website. Read our
-    <a class="fw-bold" href="{{ '/privacy' | relative_url}}">privacy policy</a> to find out more.
-    <button type="button" id="acceptcookies" class="btn btn-primary ms-2">
-        Got it!
-    </button>
+    <p>
+        We use cookies to ensure you get the best experience on our website. Read our
+        <a class="fw-bold" href="{{ site.theme_variables.privacy_statement_url | default: '/privacy' | relative_url}}">privacy policy</a> to find out more.
+    </p>
+    <div class=""d-flex justify-content-cente>
+        <button type="button" id="acceptcookies" class="btn btn-primary ms-2">
+            Got it!
+        </button>
+    </div>
 </div>
 <script>
     /*

data/_includes/events.html

@@ -11,7 +11,7 @@
       <p class="text-muted mb-0"><i class="far fa-calendar me-2"></i><time datetime="{{ event.startDate | date: '%e %B, %Y %H:%M' }}">{{ event.startDate | date_to_long_string }} {{event.startTime}}</time>
         {% if event.endDate or event.endTime %} - <time datetime="{{ event.endDate | date: '%e %B, %Y %H:%M %Z' }}">{{ event.endDate | date_to_long_string }} {{event.endTime}}</time>{% endif %}</p>
       {%- if event.location %}
-      <i class="fas fa-map-marker-alt me-2 text-muted"></i>
+      <i class="fa-solid fa-map-marker-alt me-2 text-muted"></i>
       <div class="d-inline-block text-muted">{{ event.location | markdownify }}</div>
       {%- endif %}
       {%- if event.description %}

data/_includes/github-buttons.html

@@ -2,16 +2,16 @@
 <div id="edit-me" class="btn-group">
     {%- if site.theme_variables.github_buttons.edit_me or site.theme_variables.github_buttons.edit_me == nil %}
     {%- if page.custom-editme %}
-    <a role="button" data-bs-toggle="tooltip" title="Propose changes to the content of this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.custom-editme}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-pencil-alt"></i></a>
+    <a role="button" data-bs-toggle="tooltip" title="Propose changes to the content of this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.custom-editme}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-pencil-alt"></i></a>
     {%- else %}
-    <a role="button" data-bs-toggle="tooltip" title="Propose changes to this page on {{site.theme_variables.git_host | default: 'GitHub' }}"  href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-pencil-alt"></i></a>
+    <a role="button" data-bs-toggle="tooltip" title="Propose changes to this page on {{site.theme_variables.git_host | default: 'GitHub' }}"  href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-pencil-alt"></i></a>
     {%- endif %}
     {%- endif %}
     {%- if site.theme_variables.github_buttons.open_issue or site.theme_variables.github_buttons.open_issue == nil %}
-    <a role="button" data-bs-toggle="tooltip" title="Report an issue" href="{{site.github.repository_url}}/issues/new?title={{'Issue on page: ' | url_encode }}{{page.title | url_encode }}&amp;body={{'I would like to report an issue on the ' | url_encode }}{{page.title | url_encode }}{{' page at `'| url_encode }}{{page.url | url_encode }}{{'`. Description of the issue:' | url_encode }}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-exclamation"></i></a>
+    <a role="button" data-bs-toggle="tooltip" title="Report an issue" href="{{site.github.repository_url}}/issues/new?title={{'Issue on page: ' | url_encode }}{{page.title | url_encode }}&amp;body={{'I would like to report an issue on the ' | url_encode }}{{page.title | url_encode }}{{' page at `'| url_encode }}{{page.url | url_encode }}{{'`. Description of the issue:' | url_encode }}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-exclamation"></i></a>
     {%- endif %}
     {%- if site.theme_variables.github_buttons.history or site.theme_variables.github_buttons.history == nil %}
-    <a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-history"></i></a>
+    <a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-history"></i></a>
     {%- endif %}
 </div>
 {%- endif %}

data/_includes/head.html

@@ -29,7 +29,7 @@
     <link rel="stylesheet" href="{{ 'assets/css/syntax.css' | relative_url }}">
     <!-- Country flags  -->
     <link rel="stylesheet" href="{{ 'assets/css/flag-icon.min.css' | relative_url }}">
-    <!-- Font Awesome 5 Icons -->
+    <!-- Font Awesome -->
     <link rel="stylesheet" type="text/css" href="{{ 'assets/css/all.min.css' | relative_url }}">
     <!-- Main css file -->
     <link rel="stylesheet" href="{{ 'assets/css/main.css' | relative_url }}">
@@ -40,7 +40,7 @@
     {%- endfor %}
     {%- endif %}
     <!-- JavaScript  -->
-    <script src="{{ 'assets/js/jquery-3.5.1.min.js' | relative_url }}"></script>
+    <script src="{{ 'assets/js/jquery.min.js' | relative_url }}"></script>
     <script src="{{ 'assets/js/lunr.min.js' | relative_url }}"></script>
     <script src="{{ 'assets/js/bootstrap.bundle.min.js' | relative_url }}"></script>
     <script src="{{ 'assets/js/anchor.min.js' | relative_url }}"></script>

data/_includes/more-information-tiles.html

@@ -15,10 +15,17 @@
                         <a class="btn bg-white hover-primary text-start" href="{{ training.url }}">
                             <div class="row g-1">
                                 <div class="col-2 d-flex align-items-center justify-content-center">
-                                    {%- if training.registry == "TeSS" %}
+                                    {%- assign registry = training.registry |  downcase %}
+                                    {%- if registry  == "tess" %}
                                     <img alt="TeSS logo" class="img-fluid" src="assets/img/tess_logo.svg">
+                                    {%- elsif registry == "zenodo" %}
+                                    <img alt="Zenodo logo" class="img-fluid" src="assets/img/zenodo_logo.svg">
+                                    {%- elsif registry == "youtube" %}
+                                    <img alt="Youtube logo" class="img-fluid" src="assets/img/youtube_logo.svg">
+                                    {%- elsif registry == "carpentries" %}
+                                    <img alt="Carpentries" class="img-fluid" src="assets/img/carpentries_logo.svg">
                                     {%- else %}
-                                    <i class="fas fa-external-link-alt text-primary fs-5"></i>
+                                    <i class="fa-solid fa-external-link-alt text-primary fs-5"></i>
                                     {%- endif %}
                                 </div>
                                 <div class="col-10 d-flex align-items-center">

data/_includes/news.html

@@ -8,7 +8,7 @@
     {%- for new in news reversed%}
     <li>
       <span class="title mb-1">{{ new.name | escape }}</span>
-      <p class="text-muted"><i class="far fa-calendar me-2"></i><time>{{ new.date | date_to_long_string }}</time>{% if new.linked_pr %}<b> - </b><i class="fas fa-code-branch"></i><a href="{{ site.github.repository_url | append: '/pull/' | append: new.linked_pr }}">{{new.linked_pr }}</a>{% endif %}</p>
+      <p class="text-muted"><i class="far fa-calendar me-2"></i><time>{{ new.date | date_to_long_string }}</time>{% if new.linked_pr %}<b> - </b><i class="fa-solid fa-code-branch"></i><a href="{{ site.github.repository_url | append: '/pull/' | append: new.linked_pr }}">{{new.linked_pr }}</a>{% endif %}</p>
       {%- if new.description %}
       {%- assign word_count = new.description | split: " " | size %}
       {%- if include.truncate == "true" and  word_count > 40 %}

data/_includes/resource-table-all.html

@@ -11,14 +11,14 @@
             <tr class="text-nowrap">
                 <th>Tool or resource {%- if include.tag -%}
                     <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
-                        <i class="fas fa-info-circle"></i>
+                        <i class="fa-solid fa-info-circle"></i>
                     </a>{%- endif %}
                 </th>
                 <th>Description</th>
                 <th>Related pages</th>
                 <th>Registry {%- if include.tag -%}
                     <a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
-                        <i class="fas fa-info-circle"></i>
+                        <i class="fa-solid fa-info-circle"></i>
                     </a>{%- endif %}
                 </th>
             </tr>
@@ -47,7 +47,7 @@
                 <td>{{tool.description}}
                     {%- unless instances_tool == 0 or total_county_tools == 0 or include.tag == nil %}
                     <a href="#national-resources-button" class="d-block mt-1">
-                        <span class="badge text-white bg-primary"><i class="fas fa-arrow-circle-down me-2"></i>Different instances available</span>
+                        <span class="badge text-white bg-primary"><i class="fa-solid fa-arrow-circle-down me-2"></i>Different instances available</span>
                     </a>
                     {%- endunless %}
                 </td>
@@ -62,16 +62,16 @@
                 <td>{{related_pages}}</td>
                 <td>
                     {%- if tool.registry.biotools %}
-                    <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fas fa-info me-2"></i>Tool info</span></a>
+                    <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
                     {%- endif %}
                     {%- if tool.registry.fairsharing %}
-                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fas fa-database me-2"></i>Standards/Databases</span></a>
+                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                     {%- endif %}
                     {%- if tool.registry.fairsharing-coll %}
-                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fas fa-database me-2"></i>Standards/Databases</span></a>
+                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                     {%- endif %}
                     {%- if tool.registry.tess %}
-                    <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fas fa-graduation-cap me-2"></i>Training</span></a>
+                    <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
                     {%- endif %}
                 </td>
             </tr>
@@ -102,7 +102,7 @@
                     <div class="d-block mt-1">
                         <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
                         {%- if tool.how_to_access %}
-                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fas fa-key"></i></span></span>
+                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
                         {%- endif %}
                     </div>
                     {%- endif %}

data/_includes/resource-table-page.html

@@ -25,7 +25,7 @@
                     <div class="d-block mt-1">
                         <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
                         {%- if tool.how_to_access %}
-                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fas fa-key"></i></span></span>
+                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
                         {%- endif %}
                     </div>
                     {%- endif %}

data/_includes/section-navigation-tiles.html

@@ -28,7 +28,7 @@
                 {%- endfor %}
             </select>
             <button class="btn btn-primary" title="Button to clear affiliations selection" type="button" id="clearfilter">
-                <i class="fas fa-backspace"></i>
+                <i class="fa-solid fa-backspace"></i>
             </button>
         </div>
     </div>
@@ -39,7 +39,7 @@
             <span class="input-group-text" id="search-label">Search</span>
             <input type="text" id="title-search" class="form-control" onkeyup="buttonUp();" placeholder="Type here..." aria-label="{{page.type | replace: '_', ' ' |}}" aria-describedby="search-label">
             <button class="btn btn-primary" title="Button to clear search" type="button" id="clearsearch">
-                <i class="fas fa-backspace"></i>
+                <i class="fa-solid fa-backspace"></i>
             </button>
         </div>
     </div>

data/_includes/sidebar.html

@@ -7,7 +7,7 @@
 {%- capture collecting -%}{%- if page.url == "/collecting" -%}st6{%- else -%}st16{%- endif -%}{%- endcapture -%}
 {%- capture sharing -%}{%- if page.url == "/sharing" -%}st7{%- else -%}st17{%- endif -%}{%- endcapture -%}
 <button class="btn text-start d-lg-none collapsed sidebar-collapse w-100 mb-3" type="button" data-bs-toggle="collapse" data-bs-target="#side-nav" aria-controls="side-nav" aria-expanded="true" aria-label="Toggle navigation">
-    {{ page.sidebar | capitalize | replace: "_", " " }} menu <i title="navbar-toggler" class="fa fa-bars ms-2"></i>
+    {{ page.sidebar | capitalize | replace: "_", " " }} menu <i title="navbar-toggler" class="fa-solid fa-bars ms-2"></i>
 </button>
 <nav class="collapse" id="side-nav" aria-label="Side navigation">
     {%- if sidebar.title or sidebar.version %}

data/_includes/topnav.html

@@ -4,9 +4,9 @@
     <a class="visually-hidden-focusable" href='#footer'>Skip to footer</a>
     <nav class="navbar navbar-expand-lg mb-3 mb-lg-5">
         <div class="container">
-            <a class="navbar-brand" href="{{ '/' | relative_url }}"><img class="{% if site.topnav_title %}me-3 {% endif %}img-fluid" alt="{{site.title}} logo" src="{{ 'assets/img/main_logo.svg' | relative_url }}">{% if site.topnav_title %}<span class="me-0 me-lg-3">{{site.topnav_title}}</span>{% endif %}</a>
+            <a class="navbar-brand" href="{{ '/' | relative_url }}"><img class="{% if site.topnav_title %}me-3 {% endif %}img-fluid" alt="{{site.title}} logo" src="{{ site.theme_variables.topnav.brand_logo | default: 'assets/img/main_logo.svg' | relative_url }}">{% if site.topnav_title %}<span class="me-0 me-lg-3">{{site.topnav_title}}</span>{% endif %}</a>
             <button class="navbar-toggler text-primary" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation">
-                <i title="navbar-toggler" class="fa fa-bars"></i>
+                <i title="navbar-toggler" class="fa-solid fa-bars"></i>
             </button>
             <div class="collapse navbar-collapse justify-content-end" id="navbarCollapse">
                 <ul class="navbar-nav">
@@ -47,19 +47,19 @@
                     {%- endif %}
                     {%- if site.theme_variables.topnav.twitter %}
                     <li class="nav-item ms-0 ms-lg-3 mt-2 mt-lg-0">
-                        <a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fab fa-twitter me-2"></i>Twitter</a>
+                        <a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fa-brands fa-twitter me-2"></i>Twitter</a>
                     </li>
                     {%- endif %}
                     {%- if site.theme_variables.topnav.github or site.theme_variables.topnav.github == nil %}
                     <li class="nav-item ms-0 ms-lg-3 mt-2 mt-lg-0">
-                        <a class="nav-link ps-2 d-flex align-items-center" href="{{site.github.repository_url}}"><i class="fab fa-github me-2"></i>{{site.theme_variables.git_host | default: 'GitHub' }}</a>
+                        <a class="nav-link ps-2 d-flex align-items-center" href="{{site.github.repository_url}}"><i class="fa-brands fa-github me-2"></i>{{site.theme_variables.git_host | default: 'GitHub' }}</a>
                     </li>
                     {%- endif %}
                     <!--start search-->
                     <li class="nav-item ms-0 ms-lg-3 my-2 my-lg-0">
                         <div class="position-relative">
                             <form role="search" class="input-group">
-                                <span class="input-group-text" id="search-label"><i class="fa fa-search"></i></span><input type="search" id="search-input" class="search-input form-control" tabindex="0" placeholder="Search {{ site.title }}" aria-label="Search {{ site.title }}" autocomplete="off">
+                                <span class="input-group-text" id="search-label"><i class="fa-solid fa-magnifying-glass"></i></span><input type="search" id="search-input" class="search-input form-control" tabindex="0" placeholder="Search {{ site.title }}" aria-label="Search {{ site.title }}" autocomplete="off">
                             </form>
                             <div id="search-results" class="search-results"></div>
                         </div>

data/_includes/training-table-all.html

@@ -5,7 +5,7 @@
             <tr class="text-nowrap">
                 <th>Name
                     <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all trainings that exist for a certain topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
-                        <i class="fas fa-info-circle"></i>
+                        <i class="fa-solid fa-info-circle"></i>
                     </a>
                 </th>
                 <th>Related page</th>
@@ -19,7 +19,7 @@
             <tr>
                 <td><a href="{{training.url | relative_url }}">{{training.name}}{%- if training.name == 'Training in TeSS'%} about {{page.title}}{%- endif %}</a></td>
                 <td><a href="{{page.url | relative_url }}"><span class="badge default-badge">{{page.title}}</span></a></td>
-                <td>{%- if training.registry %}{%- if training.registry_url %}<a href="{{training.registry_url}}">{%- endif %}<span class="badge bg-dark text-white hover-primary">{{training.registry}}</span>{%- if training.registry_url %}</a>{%- endif %}{%- endif %}</td>
+                <td>{%- if training.registry %}<span class="badge bg-dark text-white hover-primary">{{training.registry}}</span>{%- endif %}</td>
             </tr>
             {%- endfor %}
             {%- endunless %}

data/_layouts/default.html

@@ -21,7 +21,7 @@
     </div>
     {%- if site.theme_variables.back_to_top or site.theme_variables.back_to_top == nil %}
     <button id="back-to-top" class="btn btn-primary" type="button" aria-hidden="true" onclick="topFunction()">
-        <i class="fa fa-arrow-up"></i><span class="ms-2 d-none d-sm-inline">Back to top</span>
+        <i class="fa-solid fa-arrow-up"></i><span class="ms-2 d-none d-sm-inline">Back to top</span>
     </button>
     {%- endif %}
     {% include footer.html %}