elixir-toolkit-theme 1.11.0 → 1.14.0

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Files changed (43) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +13 -1
  3. data/_includes/callout.html +4 -4
  4. data/_includes/contributor-carousel-selection.html +3 -3
  5. data/_includes/contributor-minitiles-page.html +12 -13
  6. data/_includes/contributor-tiles-all.html +3 -3
  7. data/_includes/cookie-popup.html +9 -5
  8. data/_includes/events.html +2 -2
  9. data/_includes/github-buttons.html +4 -4
  10. data/_includes/head.html +3 -3
  11. data/_includes/more-information-tiles.html +1 -1
  12. data/_includes/news.html +2 -2
  13. data/_includes/resource-table-all.html +10 -10
  14. data/_includes/resource-table-page.html +3 -7
  15. data/_includes/section-navigation-tiles.html +2 -2
  16. data/_includes/sidebar.html +8 -8
  17. data/_includes/topnav.html +5 -5
  18. data/_includes/training-table-all.html +2 -2
  19. data/_layouts/default.html +5 -0
  20. data/assets/css/all.min.css +3 -2
  21. data/assets/css/main.scss +48 -8
  22. data/assets/js/jquery.min.js +2 -0
  23. data/assets/js/jquery.min.map +1 -0
  24. data/assets/js/main.js +20 -9
  25. data/assets/webfonts/fa-brands-400.ttf +0 -0
  26. data/assets/webfonts/fa-brands-400.woff2 +0 -0
  27. data/assets/webfonts/fa-regular-400.ttf +0 -0
  28. data/assets/webfonts/fa-regular-400.woff2 +0 -0
  29. data/assets/webfonts/fa-solid-900.ttf +0 -0
  30. data/assets/webfonts/fa-solid-900.woff2 +0 -0
  31. data/assets/webfonts/fa-v4compatibility.ttf +0 -0
  32. data/assets/webfonts/fa-v4compatibility.woff2 +0 -0
  33. metadata +6 -12
  34. data/assets/js/jquery-3.5.1.min.js +0 -2
  35. data/assets/webfonts/fa-brands-400.eot +0 -0
  36. data/assets/webfonts/fa-brands-400.svg +0 -3717
  37. data/assets/webfonts/fa-brands-400.woff +0 -0
  38. data/assets/webfonts/fa-regular-400.eot +0 -0
  39. data/assets/webfonts/fa-regular-400.svg +0 -801
  40. data/assets/webfonts/fa-regular-400.woff +0 -0
  41. data/assets/webfonts/fa-solid-900.eot +0 -0
  42. data/assets/webfonts/fa-solid-900.svg +0 -5034
  43. data/assets/webfonts/fa-solid-900.woff +0 -0
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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- metadata.gz: 4fe5e9440e3e34682666b6d049cf15eb286c6e61146aadd3c033f0455525176e
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- data.tar.gz: 91f7d940d74aa3f6400fc11057dd6294bb41f227102cbff06b7184c7f5b1fb48
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+ metadata.gz: cdc4e99361e43ec105b1dae1e89a3c69c6908afaa2f5c9c7d7fc54ac1329b921
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+ data.tar.gz: f45af8b37b1a290b11be969b0f73f5efb05b7c1e6d5ec931c984c23c9e8f62aa
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  SHA512:
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- metadata.gz: 8852094035cbd6f5e5f0fdf9faae34ff652a89ffe8a65088bcb173534cf557eb9d39b88b1cb34c6e8a8bc3c2d6688719fc0f46e085d0da6b33c6fe3a6d747af4
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- data.tar.gz: ee765a134f076c02f0410f3a42b82de1eeb090c4b1e903bc31981fdce26c1c669dab0ddebdbe3eeb8513aea988f37c78d36ffc85a7ca48b045548238afbdc159
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+ metadata.gz: 9d46de1cf1fe8cb0b8f1c7d66351bb5317268898bbe511272c4c0cf11c71e2ac266a1da14f637b475e057064c114f7b1dfa8fee9e987e8da76b5fb7e198c60b5
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+ data.tar.gz: 215097c9e884cd074f752a601744f8871939ec6c1591db9772dcd1988491335a925046b5c3127cc316d8e0ca630f297c6b7e00a5b2e0191d7fdfe5a107ec9342
data/README.md CHANGED
@@ -48,7 +48,7 @@ theme: elixir-toolkit-theme
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  ## Usage
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- [View the documentation](https://elixir-belgium.github.io/elixir-toolkit-theme/) for usage information.
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+ [View the documentation](https://elixir-belgium.github.io/elixir-toolkit-theme/) for usage information (under development).
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  ## Deployment
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@@ -103,6 +103,7 @@ This will start the docker container and serve the website locally. Make sure th
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  - [RDMGuide](https://rdm.elixir-belgium.org/)
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  - [Infectious Diseases Toolkit](https://www.infectious-diseases-toolkit.org/)
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  - [Applied Bioinformatics and Biostatistics intranet page](https://intranet.psb.ugent.be/abb/)
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+ - [FAIRDOM](https://fair-dom.org/)
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  ## Used packages
@@ -119,6 +120,17 @@ This theme would not be possible without following open source projects:
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  - [Font-Awesome](https://github.com/FortAwesome/Font-Awesome) - The famous icon library
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  - [flag-icons](https://github.com/lipis/flag-icons) - A curated collection of all country flags in SVG + css integration
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+ ## Attribution
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+
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+ If you like our work, you can add following badge to the readme of your project:
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+ ```
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+ [![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
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+ ```
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+ [![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
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+
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+
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+
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  ## License
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  The theme is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
@@ -1,9 +1,9 @@
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  {%- if include.type == "tip" %}
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- <div markdown="span" class="alert alert-success" role="alert"><i class="fas fa-check-square"></i> <b>Tip:</b> {{include.content}}</div>
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+ <div markdown="span" class="alert alert-success" role="alert"><i class="fa-solid fa-check-square"></i> <b>Tip:</b> {{include.content}}</div>
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  {%- elsif include.type == "important" %}
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- <div markdown="span" class="alert alert-warning" role="alert"><i class="fas fa-exclamation-triangle"></i> <b>Important:</b> {{include.content}}</div>
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+ <div markdown="span" class="alert alert-warning" role="alert"><i class="fa-solid fa-exclamation-triangle"></i> <b>Important:</b> {{include.content}}</div>
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  {%- elsif include.type == "note" %}
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- <div markdown="span" class="alert alert-info" role="alert"><i class="fas fa-info-circle"></i> <b>Note:</b> {{include.content}}</div>
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+ <div markdown="span" class="alert alert-info" role="alert"><i class="fa-solid fa-info-circle"></i> <b>Note:</b> {{include.content}}</div>
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  {%- elsif include.type == "warning" %}
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- <div markdown="span" class="alert alert-danger" role="alert"><i class="fas fa-exclamation-circle"></i> <b>Warning:</b> {{include.content}}</div>
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+ <div markdown="span" class="alert alert-danger" role="alert"><i class="fa-solid fa-exclamation-circle"></i> <b>Warning:</b> {{include.content}}</div>
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  {%- endif %}
@@ -51,13 +51,13 @@
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  <div class="card-footer">
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  <div class="d-flex justify-content-center">
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  {%- if contributors[contributor].git %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].email %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].orcid %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
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  {%- endif %}
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  </div>
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  </div>
@@ -16,17 +16,17 @@
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  </div>
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  <div class="d-flex mt-3 justify-content-center">
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  {%- if contributors[contributor].git %}
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- <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
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+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].email %}
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- <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
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+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].orcid %}
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- <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
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+ <div class="mx-1"><a class="btn btn-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
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  {%- endif %}
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  </div>
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  {%- endcapture %}
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- <a tabindex="0" role="button" class="btn contributor-link hover-primary m-1 position-relative" data-bs-trigger="focus" data-bs-html="true" data-bs-container="body" data-bs-toggle="popover" data-bs-placement="top" data-bs-content='{{html_code}}' title="{{contributor}}">
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+ <a tabindex="0" role="button" class="btn btn-sm contributor-link hover-primary m-1 position-relative" data-bs-trigger="focus" data-bs-html="true" data-bs-container="body" data-bs-toggle="popover" data-bs-placement="top" data-bs-content='{{html_code}}' title="{{contributor}}">
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  <div class="d-flex align-items-center">
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  <div class="flex-shrink-0">
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  {%- if contributors[contributor].image_url %}
@@ -39,18 +39,17 @@
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  {{ contributor }}
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  </div>
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  </div>
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+ {%- if page.coordinators %}
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+ {%- for coordinator in page.coordinators %}
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+ {%- if coordinator == contributor %}
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  <div class="position-absolute top-0 start-100 translate-middle">
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- {%- if page.coordinators %}
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- {%- for coordinator in page.coordinators %}
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- {%- if coordinator == contributor %}
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  <div class="rounded-circle coordinator-crown">
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- <i class="fa fa-crown"></i>
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+ <i class="fa-solid fa-crown"></i>
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  </div>
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- {%- endif %}
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- {%- endfor %}
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- {%- endif %}
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  </div>
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- </a>
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- {%- endfor %}
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+ {%- endif %}
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+ {%- endfor %}
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+ {%- endif %}
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+ </a>{%- endfor %}
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  </div>
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  {%- endif %}
@@ -46,13 +46,13 @@
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  <div class="card-footer">
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  <div class="d-flex justify-content-center">
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  {%- if contributors[contributor].git %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fab fa-github"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://github.com/{{id}}"><i class="fa-brands fa-github"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].email %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fas fa-envelope"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="mailto:{{contributors[contributor].email}}"><i class="fa-solid fa-envelope"></i></a></div>
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  {%- endif %}
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  {%- if contributors[contributor].orcid %}
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- <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fab fa-orcid"></i></a></div>
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+ <div class="mx-1"><a class="btn bg-white text-primary hover-primary rounded-circle social-icons p-0" href="https://orcid.org/{{contributors[contributor].orcid}}"><i class="fa-brands fa-orcid"></i></a></div>
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  {%- endif %}
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  </div>
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  </div>
@@ -1,11 +1,15 @@
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  {%- if site.gtag %}
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  <!-- START Bootstrap-Cookie-Alert -->
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  <div class="alert text-center cookiealert rounded-0" role="alert">
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- We use cookies to ensure you get the best experience on our website. Read our
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- <a class="fw-bold" href="{{ '/privacy.html' | relative_url}}">privacy policy</a> to find out more.
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- <button type="button" id="acceptcookies" class="btn btn-primary ms-2">
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- Got it!
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- </button>
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+ <p>
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+ We use cookies to ensure you get the best experience on our website. Read our
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+ <a class="fw-bold" href="{{ site.theme_variables.privacy_statement_url | default: '/privacy' | relative_url}}">privacy policy</a> to find out more.
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+ </p>
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+ <div class=""d-flex justify-content-cente>
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+ <button type="button" id="acceptcookies" class="btn btn-primary ms-2">
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+ Got it!
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+ </button>
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+ </div>
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  </div>
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  <script>
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  /*
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  <p class="text-muted mb-0"><i class="far fa-calendar me-2"></i><time datetime="{{ event.startDate | date: '%e %B, %Y %H:%M' }}">{{ event.startDate | date_to_long_string }} {{event.startTime}}</time>
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  {% if event.endDate or event.endTime %} - <time datetime="{{ event.endDate | date: '%e %B, %Y %H:%M %Z' }}">{{ event.endDate | date_to_long_string }} {{event.endTime}}</time>{% endif %}</p>
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  {%- if event.location %}
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- <i class="fas fa-map-marker-alt me-2 text-muted"></i>
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+ <i class="fa-solid fa-map-marker-alt me-2 text-muted"></i>
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  <div class="d-inline-block text-muted">{{ event.location | markdownify }}</div>
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  {%- endif %}
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  {%- if event.description %}
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  {%- endfor %}
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  </ul>
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  {%- if include.caption == "true" %}
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- <small>An overview of all our events can be fount on the <a href="/events.html">events page</a>.</small>
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+ <small>An overview of all our events can be fount on the <a href="{{'/events' | relative_url}}">events page</a>.</small>
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  {%- endif %}
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  </div>
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  <script>
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  <div id="edit-me" class="btn-group">
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  {%- if site.theme_variables.github_buttons.edit_me or site.theme_variables.github_buttons.edit_me == nil %}
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  {%- if page.custom-editme %}
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- <a role="button" data-bs-toggle="tooltip" title="Propose changes to the content of this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.custom-editme}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-pencil-alt"></i></a>
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+ <a role="button" data-bs-toggle="tooltip" title="Propose changes to the content of this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.custom-editme}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-pencil-alt"></i></a>
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  {%- else %}
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- <a role="button" data-bs-toggle="tooltip" title="Propose changes to this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-pencil-alt"></i></a>
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+ <a role="button" data-bs-toggle="tooltip" title="Propose changes to this page on {{site.theme_variables.git_host | default: 'GitHub' }}" href="{{site.github.repository_url}}/blob/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-pencil-alt"></i></a>
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  {%- endif %}
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  {%- endif %}
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  {%- if site.theme_variables.github_buttons.open_issue or site.theme_variables.github_buttons.open_issue == nil %}
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- <a role="button" data-bs-toggle="tooltip" title="Report an issue" href="{{site.github.repository_url}}/issues/new?title={{'Issue on page: ' | url_encode }}{{page.title | url_encode }}&amp;body={{'I would like to report an issue on the ' | url_encode }}{{page.title | url_encode }}{{' page at `'| url_encode }}{{page.url | url_encode }}{{'`. Description of the issue:' | url_encode }}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-exclamation"></i></a>
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+ <a role="button" data-bs-toggle="tooltip" title="Report an issue" href="{{site.github.repository_url}}/issues/new?title={{'Issue on page: ' | url_encode }}{{page.title | url_encode }}&amp;body={{'I would like to report an issue on the ' | url_encode }}{{page.title | url_encode }}{{' page at `'| url_encode }}{{page.url | url_encode }}{{'`. Description of the issue:' | url_encode }}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-exclamation"></i></a>
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  {%- endif %}
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  {%- if site.theme_variables.github_buttons.history or site.theme_variables.github_buttons.history == nil %}
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- <a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fas fa-history"></i></a>
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+ <a role="button" data-bs-toggle="tooltip" title="Check out the history of this page" href="{{site.github.repository_url}}/commits/{{site.github.source.branch}}/{{page.path}}" class="btn btn-sm hover-primary text-primary"><i class="fa-solid fa-history"></i></a>
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  {%- endif %}
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  </div>
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  {%- endif %}
data/_includes/head.html CHANGED
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  <meta name="apple-mobile-web-app-title" content="{{site.title}}">
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  <meta name="msapplication-TileColor" content="#{{site.theme_variables.theme_color | default: 0d6efd }}">
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  <meta name="theme-color" content="#{{site.theme_variables.theme_color | default: 0d6efd }}">
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- {%- if page.search_exclude == true and page.url != "/index.html" %}
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+ {%- if page.no_robots %}
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  <meta name="robots" content="noindex" />
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  {%- endif %}
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  {%- if page.type %}
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  <link rel="stylesheet" href="{{ 'assets/css/syntax.css' | relative_url }}">
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  <!-- Country flags -->
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  <link rel="stylesheet" href="{{ 'assets/css/flag-icon.min.css' | relative_url }}">
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- <!-- Font Awesome 5 Icons -->
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+ <!-- Font Awesome -->
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  <link rel="stylesheet" type="text/css" href="{{ 'assets/css/all.min.css' | relative_url }}">
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  <!-- Main css file -->
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  <link rel="stylesheet" href="{{ 'assets/css/main.css' | relative_url }}">
@@ -40,7 +40,7 @@
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  {%- endfor %}
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  {%- endif %}
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  <!-- JavaScript -->
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- <script src="{{ 'assets/js/jquery-3.5.1.min.js' | relative_url }}"></script>
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+ <script src="{{ 'assets/js/jquery.min.js' | relative_url }}"></script>
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  <script src="{{ 'assets/js/lunr.min.js' | relative_url }}"></script>
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  <script src="{{ 'assets/js/bootstrap.bundle.min.js' | relative_url }}"></script>
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  <script src="{{ 'assets/js/anchor.min.js' | relative_url }}"></script>
@@ -18,7 +18,7 @@
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  {%- if training.registry == "TeSS" %}
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  <img alt="TeSS logo" class="img-fluid" src="assets/img/tess_logo.svg">
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  {%- else %}
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- <i class="fas fa-external-link-alt text-primary fs-5"></i>
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+ <i class="fa-solid fa-external-link-alt text-primary fs-5"></i>
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  {%- endif %}
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  </div>
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  <div class="col-10 d-flex align-items-center">
data/_includes/news.html CHANGED
@@ -8,7 +8,7 @@
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  {%- for new in news reversed%}
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  <li>
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  <span class="title mb-1">{{ new.name | escape }}</span>
11
- <p class="text-muted"><i class="far fa-calendar me-2"></i><time>{{ new.date | date_to_long_string }}</time>{% if new.linked_pr %}<b> - </b><i class="fas fa-code-branch"></i><a href="{{ site.github.repository_url | append: '/pull/' | append: new.linked_pr }}">{{new.linked_pr }}</a>{% endif %}</p>
11
+ <p class="text-muted"><i class="far fa-calendar me-2"></i><time>{{ new.date | date_to_long_string }}</time>{% if new.linked_pr %}<b> - </b><i class="fa-solid fa-code-branch"></i><a href="{{ site.github.repository_url | append: '/pull/' | append: new.linked_pr }}">{{new.linked_pr }}</a>{% endif %}</p>
12
12
  {%- if new.description %}
13
13
  {%- assign word_count = new.description | split: " " | size %}
14
14
  {%- if include.truncate == "true" and word_count > 40 %}
@@ -31,6 +31,6 @@
31
31
  {%- endfor %}
32
32
  </ul>
33
33
  {%- if include.caption == "true" %}
34
- <small>For more news please visit our <a href="/news.html">news page</a>.</small>
34
+ <small>For more news please visit our <a href="/news">news page</a>.</small>
35
35
  {%- endif %}
36
36
  </div>
@@ -8,17 +8,17 @@
8
8
  <div class="table-responsive mt-4 mb-5">
9
9
  <table id="tooltable" class="table display">
10
10
  <thead>
11
- <tr>
11
+ <tr class="text-nowrap">
12
12
  <th>Tool or resource {%- if include.tag -%}
13
13
  <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
14
- <i class="fas fa-info-circle"></i>
14
+ <i class="fa-solid fa-info-circle"></i>
15
15
  </a>{%- endif %}
16
16
  </th>
17
17
  <th>Description</th>
18
18
  <th>Related pages</th>
19
19
  <th>Registry {%- if include.tag -%}
20
20
  <a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
21
- <i class="fas fa-info-circle"></i>
21
+ <i class="fa-solid fa-info-circle"></i>
22
22
  </a>{%- endif %}
23
23
  </th>
24
24
  </tr>
@@ -47,7 +47,7 @@
47
47
  <td>{{tool.description}}
48
48
  {%- unless instances_tool == 0 or total_county_tools == 0 or include.tag == nil %}
49
49
  <a href="#national-resources-button" class="d-block mt-1">
50
- <span class="badge text-white bg-primary"><i class="fas fa-arrow-circle-down me-2"></i>Different instances available</span>
50
+ <span class="badge text-white bg-primary"><i class="fa-solid fa-arrow-circle-down me-2"></i>Different instances available</span>
51
51
  </a>
52
52
  {%- endunless %}
53
53
  </td>
@@ -60,18 +60,18 @@
60
60
  {%- endfor %}
61
61
  {%- endcapture %}
62
62
  <td>{{related_pages}}</td>
63
- <td class="align-middle text-center">
63
+ <td>
64
64
  {%- if tool.registry.biotools %}
65
- <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary">Tool info</span></a>
65
+ <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
66
66
  {%- endif %}
67
67
  {%- if tool.registry.fairsharing %}
68
- <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary">Standards/Databases</span></a>
68
+ <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
69
69
  {%- endif %}
70
70
  {%- if tool.registry.fairsharing-coll %}
71
- <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary">Standards/Databases</span></a>
71
+ <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
72
72
  {%- endif %}
73
73
  {%- if tool.registry.tess %}
74
- <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary">Training</span></a>
74
+ <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
75
75
  {%- endif %}
76
76
  </td>
77
77
  </tr>
@@ -102,7 +102,7 @@
102
102
  <div class="d-block mt-1">
103
103
  <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
104
104
  {%- if tool.how_to_access %}
105
- <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fas fa-key"></i></span></span>
105
+ <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
106
106
  {%- endif %}
107
107
  </div>
108
108
  {%- endif %}
@@ -5,12 +5,8 @@
5
5
  <div class="table-responsive mt-4 mb-5">
6
6
  <table id="tooltable" class="table display">
7
7
  <thead>
8
- <tr>
9
- <th>Resource {%- if include.tag -%}
10
- <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
11
- <i class="fas fa-info-circle" style="color:var(--main-text-color);"></i>
12
- </a>{%- endif %}
13
- </th>
8
+ <tr class="text-nowrap">
9
+ <th>Resource</th>
14
10
  <th>Description</th>
15
11
  <th>Related pages</th>
16
12
  </tr>
@@ -29,7 +25,7 @@
29
25
  <div class="d-block mt-1">
30
26
  <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{tool.instance_of}}"><span class="badge text-primary border border-primary">{{tool.instance_of}}</span></span>
31
27
  {%- if tool.how_to_access %}
32
- <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fas fa-key"></i></span></span>
28
+ <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
33
29
  {%- endif %}
34
30
  </div>
35
31
  {%- endif %}
@@ -28,7 +28,7 @@
28
28
  {%- endfor %}
29
29
  </select>
30
30
  <button class="btn btn-primary" title="Button to clear affiliations selection" type="button" id="clearfilter">
31
- <i class="fas fa-backspace"></i>
31
+ <i class="fa-solid fa-backspace"></i>
32
32
  </button>
33
33
  </div>
34
34
  </div>
@@ -39,7 +39,7 @@
39
39
  <span class="input-group-text" id="search-label">Search</span>
40
40
  <input type="text" id="title-search" class="form-control" onkeyup="buttonUp();" placeholder="Type here..." aria-label="{{page.type | replace: '_', ' ' |}}" aria-describedby="search-label">
41
41
  <button class="btn btn-primary" title="Button to clear search" type="button" id="clearsearch">
42
- <i class="fas fa-backspace"></i>
42
+ <i class="fa-solid fa-backspace"></i>
43
43
  </button>
44
44
  </div>
45
45
  </div>
@@ -1,13 +1,13 @@
1
1
  {%- assign sidebar = site.data.sidebars[page.sidebar] %}
2
- {%- capture reusing -%}{%- if page.url == "/reusing.html" -%}st0{%- else -%}st10{%- endif -%}{%- endcapture -%}
3
- {%- capture preserving -%}{%- if page.url == "/preserving.html" -%}st2{%- else -%}st12{%- endif -%}{%- endcapture -%}
4
- {%- capture analysing -%}{%- if page.url == "/analysing.html" -%}st3{%- else -%}st13{%- endif -%}{%- endcapture -%}
5
- {%- capture processing -%}{%- if page.url == "/processing.html" -%}st4{%- else -%}st14{%- endif -%}{%- endcapture -%}
6
- {%- capture planning -%}{%- if page.url == "/planning.html" -%}st5{%- else -%}st15{%- endif -%}{%- endcapture -%}
7
- {%- capture collecting -%}{%- if page.url == "/collecting.html" -%}st6{%- else -%}st16{%- endif -%}{%- endcapture -%}
8
- {%- capture sharing -%}{%- if page.url == "/sharing.html" -%}st7{%- else -%}st17{%- endif -%}{%- endcapture -%}
2
+ {%- capture reusing -%}{%- if page.url == "/reusing" -%}st0{%- else -%}st10{%- endif -%}{%- endcapture -%}
3
+ {%- capture preserving -%}{%- if page.url == "/preserving" -%}st2{%- else -%}st12{%- endif -%}{%- endcapture -%}
4
+ {%- capture analysing -%}{%- if page.url == "/analysing" -%}st3{%- else -%}st13{%- endif -%}{%- endcapture -%}
5
+ {%- capture processing -%}{%- if page.url == "/processing" -%}st4{%- else -%}st14{%- endif -%}{%- endcapture -%}
6
+ {%- capture planning -%}{%- if page.url == "/planning" -%}st5{%- else -%}st15{%- endif -%}{%- endcapture -%}
7
+ {%- capture collecting -%}{%- if page.url == "/collecting" -%}st6{%- else -%}st16{%- endif -%}{%- endcapture -%}
8
+ {%- capture sharing -%}{%- if page.url == "/sharing" -%}st7{%- else -%}st17{%- endif -%}{%- endcapture -%}
9
9
  <button class="btn text-start d-lg-none collapsed sidebar-collapse w-100 mb-3" type="button" data-bs-toggle="collapse" data-bs-target="#side-nav" aria-controls="side-nav" aria-expanded="true" aria-label="Toggle navigation">
10
- {{ page.sidebar | capitalize | replace: "_", " " }} menu <i title="navbar-toggler" class="fa fa-bars ms-2"></i>
10
+ {{ page.sidebar | capitalize | replace: "_", " " }} menu <i title="navbar-toggler" class="fa-solid fa-bars ms-2"></i>
11
11
  </button>
12
12
  <nav class="collapse" id="side-nav" aria-label="Side navigation">
13
13
  {%- if sidebar.title or sidebar.version %}
@@ -4,9 +4,9 @@
4
4
  <a class="visually-hidden-focusable" href='#footer'>Skip to footer</a>
5
5
  <nav class="navbar navbar-expand-lg mb-3 mb-lg-5">
6
6
  <div class="container">
7
- <a class="navbar-brand" href="{{ 'index.html' | relative_url }}"><img class="{% if site.topnav_title %}me-3 {% endif %}img-fluid" alt="{{site.title}} logo" src="{{ 'assets/img/main_logo.svg' | relative_url }}">{% if site.topnav_title %}<span class="me-0 me-lg-3">{{site.topnav_title}}</span>{% endif %}</a>
7
+ <a class="navbar-brand" href="{{ '/' | relative_url }}"><img class="{% if site.topnav_title %}me-3 {% endif %}img-fluid" alt="{{site.title}} logo" src="{{ site.theme_variables.topnav.brand_logo | default: 'assets/img/main_logo.svg' | relative_url }}">{% if site.topnav_title %}<span class="me-0 me-lg-3">{{site.topnav_title}}</span>{% endif %}</a>
8
8
  <button class="navbar-toggler text-primary" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation">
9
- <i title="navbar-toggler" class="fa fa-bars"></i>
9
+ <i title="navbar-toggler" class="fa-solid fa-bars"></i>
10
10
  </button>
11
11
  <div class="collapse navbar-collapse justify-content-end" id="navbarCollapse">
12
12
  <ul class="navbar-nav">
@@ -47,19 +47,19 @@
47
47
  {%- endif %}
48
48
  {%- if site.theme_variables.topnav.twitter %}
49
49
  <li class="nav-item ms-0 ms-lg-3 mt-2 mt-lg-0">
50
- <a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fab fa-twitter me-2"></i>Twitter</a>
50
+ <a class="nav-link ps-2 d-flex align-items-center" href="{{site.theme_variables.topnav.twitter}}"><i class="fa-brands fa-twitter me-2"></i>Twitter</a>
51
51
  </li>
52
52
  {%- endif %}
53
53
  {%- if site.theme_variables.topnav.github or site.theme_variables.topnav.github == nil %}
54
54
  <li class="nav-item ms-0 ms-lg-3 mt-2 mt-lg-0">
55
- <a class="nav-link ps-2 d-flex align-items-center" href="{{site.github.repository_url}}"><i class="fab fa-github me-2"></i>{{site.theme_variables.git_host | default: 'GitHub' }}</a>
55
+ <a class="nav-link ps-2 d-flex align-items-center" href="{{site.github.repository_url}}"><i class="fa-brands fa-github me-2"></i>{{site.theme_variables.git_host | default: 'GitHub' }}</a>
56
56
  </li>
57
57
  {%- endif %}
58
58
  <!--start search-->
59
59
  <li class="nav-item ms-0 ms-lg-3 my-2 my-lg-0">
60
60
  <div class="position-relative">
61
61
  <form role="search" class="input-group">
62
- <span class="input-group-text" id="search-label"><i class="fa fa-search"></i></span><input type="search" id="search-input" class="search-input form-control" tabindex="0" placeholder="Search {{ site.title }}" aria-label="Search {{ site.title }}" autocomplete="off">
62
+ <span class="input-group-text" id="search-label"><i class="fa-solid fa-magnifying-glass"></i></span><input type="search" id="search-input" class="search-input form-control" tabindex="0" placeholder="Search {{ site.title }}" aria-label="Search {{ site.title }}" autocomplete="off">
63
63
  </form>
64
64
  <div id="search-results" class="search-results"></div>
65
65
  </div>
@@ -2,10 +2,10 @@
2
2
  <div class="table-responsive mt-4 mb-5">
3
3
  <table id="trainingtable" class="table display">
4
4
  <thead>
5
- <tr>
5
+ <tr class="text-nowrap">
6
6
  <th>Name
7
7
  <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all trainings that exist for a certain topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
8
- <i class="fas fa-info-circle"></i>
8
+ <i class="fa-solid fa-info-circle"></i>
9
9
  </a>
10
10
  </th>
11
11
  <th>Related page</th>
@@ -19,6 +19,11 @@
19
19
  </div>
20
20
  </div>
21
21
  </div>
22
+ {%- if site.theme_variables.back_to_top or site.theme_variables.back_to_top == nil %}
23
+ <button id="back-to-top" class="btn btn-primary" type="button" aria-hidden="true" onclick="topFunction()">
24
+ <i class="fa-solid fa-arrow-up"></i><span class="ms-2 d-none d-sm-inline">Back to top</span>
25
+ </button>
26
+ {%- endif %}
22
27
  {% include footer.html %}
23
28
  {% include cookie-popup.html %}
24
29
  </body>