elexis-wiki-interface 0.4.8 → 0.5.0

data/spec/data/images/ch.elexis.core.application.feature/pom.xml

@@ -0,0 +1,12 @@
+<project xsi:schemaLocation='http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd' xmlns='http://maven.apache.org/POM/4.0.0' xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'>
+  <modelVersion> 4.0.0 </modelVersion>
+  <parent>
+    <groupId> ch.elexis </groupId>
+    <artifactId> elexis-3-core </artifactId>
+    <version>3.0.0-SNAPSHOT</version>
+  </parent>
+  <groupId> ch.elexis </groupId>
+  <artifactId> ch.elexis.core.application.feature </artifactId>
+  <version>3.0.0-SNAPSHOT</version>
+  <packaging> eclipse-feature </packaging>
+</project>

data/spec/data/images/ch.elexis.icpc/.project

@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ch.elexis.icpc</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

data/spec/data/images/ch.elexis.icpc/META-INF/MANIFEST.MF

@@ -0,0 +1,26 @@
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: Elexis Plugin für ICPC 2
+Bundle-SymbolicName: ch.elexis.icpc;singleton:=true
+Bundle-Version: 3.0.0.qualifier
+Bundle-Vendor: elexis.ch
+Bundle-Localization: plugin
+Require-Bundle: ch.elexis.core;bundle-version="3.0.0",
+ ch.elexis.core.data;bundle-version="3.0.0",
+ ch.elexis.core.ui;bundle-version="3.0.0",
+ ch.elexis.core.ui.icons;bundle-version="3.0.0",
+ ch.elexis.core.ui.importer.div;bundle-version="3.0.0",
+ ch.rgw.utility,
+ org.eclipse.core.runtime,
+ org.eclipse.ui,
+ org.eclipse.ui.forms,
+ com.healthmarketscience.jackcess,
+ ch.elexis.core.ui.medication,
+ ch.elexis.core.ui.laboratory,
+ ch.elexis.core.ui.contacts
+Eclipse-LazyStart: false
+Bundle-Activator: ch.elexis.icpc.Activator
+Export-Package: ch.elexis.icpc; uses:="org.eclipse.core.runtime,  ch.rgw.tools,  ch.elexis.actions,  ch.elexis.util,  ch.elexis.data,  ch.elexis.views.codesystems,  ch.elexis.icpc.views,  org.eclipse.ui,  org.eclipse.swt.custom,  org.eclipse.ui.plugin,  org.eclipse.ui.forms.widgets,  org.eclipse.osgi.util,  ch.elexis.text,  ch.elexis.views,  ch.elexis.util.viewers,  org.eclipse.jface.viewers,  org.osgi.framework,  org.eclipse.swt.widgets"
+Created-By: Buildr
+Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+

data/spec/data/images/ch.elexis.icpc/doc/test.mediawiki

@@ -0,0 +1,15 @@
+== Test ==
+
+Bitte ignorieren. Wird für Tests verwendet.
+
+== Ein Problem in einer Konsultation behandeln ==
+
+tag_one [[Image:ch.elexis.icpc:icpc1.png|image]]<br />
+tag_two [[Image:ch.elexis.icpc:icpc2.png|image]]<br />
+tag_three [[Image:icpc3.png|image]]<br />
+tag_four [[Datei:ch.elexis.icpc:icpc4.png|image]]<br />
+tag_five [[Datei:Ch.elexis.icpc:icpc5.png|image]]<br />
+
+
+
+

data/spec/data/images/ch.elexis.icpc/doc/test2.mediawiki

@@ -0,0 +1,19 @@
+== Test ==
+
+Bitte ignorieren. Wird für Tests verwendet.
+
+== Ein Problem in einer Konsultation behandeln ==
+
+tag_one [[Image:ch.elexis.icpc:icpc1.png|image]]<br />
+tag_two [[Image:ch.elexis.icpc:icpc2.png|image]]<br />
+tag_three [[Image:icpc3.png|image]]<br />
+tag_four [[Datei:ch.elexis.icpc:icpc4.png|image]]<br />
+tag_png [[Datei:Ch.elexis.icpc:icpc5.png|image]]<br />
+tag_jpg [[Datei:Ch.elexis.icpc:icpc6.png|image]]<br />
+tag_gif [[Datei:Ch.elexis.icpc:icpc7.png|image]]<br />
+tag_utf [[File:curabillsettings.png<U+200E>]]
+
+
+
+
+

data/spec/data/images/ch.elexis.icpc/plugin.xml

@@ -0,0 +1,74 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<?eclipse version="3.1"?>
+<plugin>
+   <extension
+         point="ch.elexis.core.ui.Diagnosecode">
+      <Diagnosesystem
+            CodeDetailDisplay="ch.elexis.icpc.DetailDisplay"
+            CodeSelectorFactory="ch.elexis.icpc.CodeSelectorFactory"
+            ElementFactory="ch.elexis.icpc.IcpcFactory"
+            ImporterClass="ch.elexis.icpc.IcpcImporter"
+            name="ICPC2"/>
+   </extension>
+   <extension
+         point="ch.elexis.core.data.PersistentReference">
+      <Factory
+            Class="ch.elexis.icpc.IcpcFactory"
+            name="IcpcFactory"/>
+   </extension>
+   <extension
+         point="ch.elexis.core.data.DataAccess">
+      <DataAccess
+            class="ch.elexis.icpc.DataAccessor"
+            name="ICPC">
+      </DataAccess>
+   </extension>
+   <extension
+         point="org.eclipse.ui.views">
+      <category
+            id="ch.elexis.icpcCategory"
+            name="ICPC"/>
+      <view
+            category="ch.elexis.icpcCategory"
+            class="ch.elexis.icpc.views.EpisodesView"
+            icon="icons/wonca16.png"
+            id="ch.elexis.icpc.episodesView"
+            name="Probleme"/>
+      <view
+            category="ch.elexis.icpcCategory"
+            class="ch.elexis.icpc.views.EncounterView"
+            icon="icons/wonca16.png"
+            id="ch.elexis.icpc.encounterView"
+            name="Encounters"/>
+      <view
+            allowMultiple="false"
+            category="ch.elexis.icpcCategory"
+            class="ch.elexis.icpc.views.ICPCCodesView"
+            icon="icons/wonca16.png"
+            id="ch.elexis.icpc.codesView"
+            name="ICPC2-Codes">
+      </view>
+   </extension>
+   <extension
+         point="org.eclipse.ui.perspectives">
+      <perspective
+            class="ch.elexis.icpc.views.IcpcPerspektive"
+            fixed="false"
+            icon="icons/wonca16.png"
+            id="ch.elexis.icpc.perspective"
+            name="ICPC "/>
+   </extension>
+   <extension
+         point="ch.elexis.core.ui.KonsExtension">
+      <Link
+            KonsExtension="ch.elexis.icpc.KonsExtension"
+            name="ICPC"/>
+   </extension>
+   <extension
+         point="ch.elexis.core.ui.Sidebar">
+      <Perspektive
+            ID="ch.elexis.icpc.perspective"
+            name="ICPC-2"/>
+   </extension>
+
+</plugin>

data/spec/data/images/ch.elexis.notes/.project

@@ -0,0 +1,34 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ch.elexis.notes</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>net.sourceforge.texlipse.builder.TexlipseBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>net.sourceforge.texlipse.builder.TexlipseNature</nature>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

data/spec/data/images/ch.elexis.notes/META-INF/MANIFEST.MF

@@ -0,0 +1,17 @@
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: Elexis Notizbuch
+Bundle-SymbolicName: ch.elexis.notes;singleton:=true
+Bundle-Version: 3.0.0.qualifier
+Bundle-Vendor: elexis.info
+Bundle-Localization: plugin
+Require-Bundle: org.eclipse.ui,
+ org.eclipse.ui.forms,
+ org.eclipse.core.runtime,
+ ch.rgw.utility;bundle-version="3.0.0",
+ ch.elexis.core;bundle-version="3.0.0",
+ ch.elexis.core.data;bundle-version="3.0.0",
+ ch.elexis.core.ui;bundle-version="3.0.0",
+ ch.elexis.core.ui.icons;bundle-version="3.0.0",
+ org.jdom;bundle-version="1.1.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-1.7

data/spec/data/images/ch.elexis.notes/doc/test.mediawiki

@@ -0,0 +1,13 @@
+== Test ==
+
+Bitte ignorieren. Wird für Tests verwendet.
+
+== Ein Problem in einer Konsultation behandeln ==
+
+tag_one [[Image:kabel.png|image]]<br />
+tag_two[[Image:icpc1.png|image]]<br />
+tag_word [[Image:at.medevit.medelexis.text.msword:WordBriefe.png|Microsoft Word Integration in Elexis]]<br />
+
+
+
+

data/spec/data/images/ch.elexis.notes/plugin.properties

@@ -0,0 +1 @@
+notes = Notes

data/spec/data/images/ch.elexis.notes/plugin.xml

@@ -0,0 +1,36 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<?eclipse version="3.2"?>
+<plugin>
+<extension
+         point="org.eclipse.ui.perspectives">
+ <perspective
+            class="ch.elexis.notes.NotesPerspective"
+            icon="icons/notebook.gif"
+            id="ch.elexis.SchwarzesBrett"
+            name="%notes"/>
+            </extension>
+            
+   <extension
+         point="org.eclipse.ui.views">
+      <view
+            class="ch.elexis.notes.NotesView"
+            icon="icons/notebook.gif"
+            id="ch.elexis.notes.view"
+            name="%notes"/>
+   </extension>
+   <extension
+         point="ch.elexis.core.data.PersistentReference">
+      <Factory
+            Class="ch.elexis.notes.NoteFactory"
+            name="NotesFactory"/>
+   </extension>
+   <extension
+         point="org.eclipse.ui.preferencePages">
+      <page
+            class="ch.elexis.notes.Preferences"
+            id="Preferences"
+            name="%notes">
+      </page>
+   </extension>
+
+</plugin>

data/spec/data/images/ch.elexis.notes/plugin_de.properties

@@ -0,0 +1,3 @@
+#Created by JInto - www.guh-software.de
+#Wed Jul 07 09:21:15 CEST 2010
+notes=Notizen

data/spec/data/images/ch.elexis.notes/plugin_en.properties

@@ -0,0 +1,3 @@
+#Created by JInto - www.guh-software.de
+#Wed Jul 07 08:06:32 CEST 2010
+notes=Notes

data/spec/data/images/ch.elexis.notes/plugin_fr.properties

@@ -0,0 +1,3 @@
+#Created by JInto - www.guh-software.de
+#Wed Jul 07 08:06:32 CEST 2010
+notes=Notes

data/spec/data/images/doc_de/.project

@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>doc_de</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>net.sourceforge.texlipse.builder.TexlipseBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.zeroturnaround.eclipse.rebelXmlBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>net.sourceforge.texlipse.builder.TexlipseNature</nature>
+		<nature>org.eclipse.jem.workbench.JavaEMFNature</nature>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.eclipse.jem.beaninfo.BeanInfoNature</nature>
+		<nature>org.zeroturnaround.eclipse.jrebelNature</nature>
+	</natures>
+</projectDescription>

data/spec/images_spec.rb

@@ -0,0 +1,236 @@
+#encoding : utf-8
+require 'spec_helper'
+
+require "elexis/wiki/images"
+
+describe 'Images' do
+  NR_PICTURES = 23
+
+  before :all do
+    @subdir = 'images'
+    @originDir = File.expand_path(File.join(File.dirname(__FILE__), 'data', @subdir))
+    @dataDir = File.expand_path(File.join(File.dirname(__FILE__), 'run', @subdir))
+    FileUtils.rm_rf(@dataDir)
+    FileUtils.makedirs(@dataDir)
+    FileUtils.cp_r(@originDir, @dataDir, :preserve => true)
+    @images = Elexis::Wiki::Images.new(@dataDir)
+  end
+
+  after :all do
+#    FileUtils.rm_rf(@dataDir)
+  end
+
+  it "should create the pictures.yml and .csv file" do
+    expect(@images.yml).to eq File.join(@images.rootDir, 'pictures.yml')
+    expect(@images.csv).to eq File.join(@images.rootDir, 'pictures.csv')
+    expect(File.exist?(@images.yml)).to eq true
+    expect(File.exist?(@images.csv)).to eq true
+  end
+
+
+  it "should read #{NR_PICTURES} pictures" do
+    expect(@images.pictures.size).to eq NR_PICTURES
+  end
+
+  it "pictures.yml should contain some png" do
+    content = IO.read(@images.yml)
+    expect(content.index('doc/ch.elexis.icpc_icpc1.png')).not_to eq 0
+    expect(content.index('doc/icpc1.png')).not_to eq 0
+    expect(content.index('icpc6.png')).not_to eq 0
+    expect(content.index('favicon_green.png')).not_to eq 0
+  end
+
+  it "pictures.csv should contain some png" do
+    content = IO.read(@images.csv)
+    expect(content.index('icpc6.png')).not_to eq 0
+    expect(content.index('favicon_green.png')).not_to eq 0
+  end
+
+  def check_rename(wiki_file, old_picture_name, new_picture_name, expected_new_line)
+    expect(IO.read(wiki_file)).to include old_picture_name
+    @images.change_image_name_in_mediawiki(wiki_file, old_picture_name, new_picture_name)
+    changed = IO.read(wiki_file)
+    expect(changed).to include "tag_one"
+    expect(changed).to include "tag_two"
+    expect(changed).to include "tag_three"
+    changed.index(new_picture_name)
+    expect(changed).to include expected_new_line
+  end
+
+  describe 'get_name_with_project' do
+    tests = {
+      'elexis-3-base/ch.elexis.connect.reflotron.v2/doc/test.png' => 'reflotron-test.png',
+      'elexis-3-base/ch.elexis.connect.reflotron.v2.feature/doc/test.png' => 'reflotron-test.png',
+      'elexis-3-base/ch.elexis.laborimport.viollier.v2_test/doc/test.png' => 'viollier-test.png',
+      'org.iatrix/doc/test.png' => 'iatrix-test.png',
+      'org.iatrix.test/doc/test.png' => 'iatrix-test.png',
+      'org.iatrix.feature/doc/test.png' => 'iatrix-test.png',
+      'org.iatrix.tests/doc/test.png' => 'iatrix-test.png',
+      'org.iatrix.tests/doc/test.jpg' => 'iatrix-test.jpg',
+      'org.iatrix_tests/doc/test.gif' => 'iatrix-test.gif',
+      }
+    tests.each {
+      |path, expected|
+      it "should return #{expected} for #{path}" do
+        value = @images.get_name_with_project(path)
+        expect(value).to eq expected
+      end
+    }
+  end
+
+  rename_tests = {
+     'Ch.elexis.icpc:icpc5.png' => [ 'icpc5.png', 'tag_png [[File:icpc5.png|image]]'],
+     'Ch.elexis.icpc:icpc6.png' => [ 'elexis_logo.jpg', 'tag_jpg [[File:elexis_logo.jpg|image]]'],
+     'Ch.elexis.icpc:icpc7.png' => [ 'disposan.gif', 'tag_gif [[File:disposan.gif|image]]'],
+    }
+  rename_tests.each {
+              |old_picture_name, params|
+    it "should go work with #{params[1]}" do
+      full_name =  File.join(@dataDir, @subdir, 'ch.elexis.icpc', 'doc', 'test2.mediawiki')
+      check_rename(full_name, old_picture_name, params[0], params[1])
+    end
+  }
+
+  it "should refuse to change the image name in a mediawiki file when we find no corresponding image file" do
+    wiki_file = File.join(@dataDir, @subdir, 'ch.elexis.icpc', 'doc', 'test2.mediawiki')
+    expect(File.exist?(wiki_file)).to eq true
+    old_picture_name = 'ch.elexis.icpc:icpc4.png'
+    expect(IO.read(wiki_file)).to include old_picture_name
+    expect { @images.change_image_name_in_mediawiki(wiki_file, old_picture_name, 'icpc_should_not_exist.png')}.to raise_error(RuntimeError, /Could not find image/)
+  end
+
+  describe "determine_cleanup" do
+    before(:all) do
+      @images.determine_cleanup
+    end
+
+    it "should find duplicates" do
+      expect(@images.duplicates.size).not_to eq 0
+    end
+
+    it "should find nr_single_sha" do
+      expect(@images.nr_single_sha.size).not_to eq 0
+    end
+
+    it "should find to_short_names" do
+      expect(@images.to_short_names.size).not_to eq 0
+    end
+
+    # now the failing ones
+    it "should find same_name_but_differen_content" do
+      # skip "No example yet"
+      expect(@images.dup_non_identical.size).not_to eq 0
+    end
+
+    it "should find multiple_names" do
+      expect(@images.multiple_names.size).not_to eq 0
+    end
+    it "should find short_and_sha_okay" do
+      expect(@images.short_and_sha_okay.size).not_to eq 0
+    end
+
+    it "should find wrong_best_name" do
+      expect(@images.wrong_best_name.size).to eq 0
+    end
+
+    it "should find new_best_name" do
+      expect(@images.new_best_name.size).not_to eq 0
+    end
+  end
+end
+
+
+describe 'ImagesCleanup' do
+
+  def setup_run
+    @subdir = 'images'
+    @originDir = File.expand_path(File.join(File.dirname(__FILE__), 'data', @subdir))
+    @dataDir = File.expand_path(File.join(File.dirname(__FILE__), 'run', @subdir))
+    FileUtils.rm_rf(@dataDir)
+    FileUtils.makedirs(@dataDir)
+    FileUtils.cp_r(@originDir, @dataDir, :preserve => true)
+    @images = Elexis::Wiki::Images.new(@dataDir)
+  end
+
+  before :all do
+    setup_run
+  end
+
+  describe "execute_cleanup with git" do
+    before(:all) do
+      setup_run
+      system("git init #{@dataDir}")
+      @images.determine_cleanup
+      @images.execute_cleanup(true)
+    end
+
+    it "should add Icpc8.png and icpc1.png" do
+      expect(@images.actions.index("git add -f images/ch.elexis.icpc/doc/icpc1.png")).not_to eq nil
+      expect(@images.actions.index("git add -f images/ch.elexis.icpc/doc/Icpc8.png")).not_to eq nil
+    end
+  end
+
+  describe "execute_cleanup" do
+    before(:all) do
+      setup_run
+      @images.determine_cleanup
+      @images.execute_cleanup
+    end
+
+    it "should change_image_name_in_mediawiki" do
+      cmd = 'change_image_name_in_mediawiki test.mediawiki kabel.png icpc-kabel.png'
+      expect(@images.actions.index(cmd) >= 0)
+    end
+
+    it "should remove obsolete symlinks" do
+      cmd = 'rm Ch.elexis.notes'
+      expect(@images.actions.index(cmd) >= 0)
+    end
+
+
+    it "should NOT mv medevit_inbox1.png" do
+      cmd = 'medevit_inbox1.png'
+      expect(@images.actions.index(cmd)).to eq nil
+    end
+
+    it "should mv Com.hilotec.elexis.opendocument_anleitung_opendocument_1.png to anleitung_opendocument_1.png" do
+      cmd = 'mv Com.hilotec.elexis.opendocument_anleitung_opendocument_1.png anleitung_opendocument_1.png'
+      puts @images.actions.join("\n")
+      expect(@images.actions.index(cmd) >= 0)
+    end
+
+    it "should find mv duplicate-images" do
+      cmd = 'mv kabel.png icpc-kabel.png'
+      expect(@images.actions.index(cmd) >= 0)
+      @images.execute_cleanup
+      cmd = 'mv kabel.png icpc-kabel.png'
+      expect(@images.actions.index(cmd) >= 0)
+    end
+
+    it "should find remove old files" do
+      cmd = 'rm -f ch.elexis.icpc_icpc1.png'
+      expect(@images.actions.index(cmd) >= 0)
+    end
+
+    it "should find any files with ':' in their names" do
+      search = "#{@images.rootDir}/**/*:*"
+      files = Dir.glob(search)
+      expect(files.size).to eq 0
+    end
+    it "should remove_files_with_case_sensitive_changes" do
+      lowercase = "#{@images.rootDir}/test_lower_case.png"
+      up_case = "#{@images.rootDir}/TEST_LOWER_CASE.png"
+      capitalized = "#{@images.rootDir}/Test_lower_case.png"
+      [ lowercase, up_case, capitalized].each {
+        |file|
+          system("touch #{file}")
+          expect(File.exist?(file))
+      }
+      @images.remove_files_with_case_sensitive_changes(lowercase)
+      expect(File.exist?(lowercase))
+      expect(File.exist?(up_case)).to eq false
+      expect(File.exist?(capitalized)).to eq false
+    end
+  end
+end
+