edfize 0.1.0 → 0.2.0.beta1

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@@ -1,7 +1,7 @@
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data/CHANGELOG.md

@@ -1,3 +1,11 @@
+## 0.2.0
+
+### Enhancements
+- EDFs can now be partially loaded by specifying the epoch number and epoch size in seconds
+
+### Testing
+- Updated to minitest test framework along with simplecov for coverage
+
 ## 0.1.0 (May 28, 2014)
 - Initial EDF class to load headers and signals into Ruby objects
 - `edfize` command has the following actions:

data/lib/edfize/edf.rb

@@ -58,6 +58,13 @@ module Edfize
       get_data_records
     end
 
+    # Epoch Number is Zero Indexed, and Epoch Size is in Seconds (Not Data Records)
+    def load_epoch(epoch_number, epoch_size)
+      # reset_signals!
+      load_digital_signals_by_epoch(epoch_number, epoch_size)
+      calculate_physical_values!
+    end
+
     def size_of_header
       HEADER_OFFSET + ns * Signal::SIGNAL_CONFIG.collect{|k,h| h[:size]}.inject(:+)
     end
@@ -153,6 +160,11 @@ module Edfize
       @number_of_signals
     end
 
+    def reset_signals!
+      @signals = []
+      read_signal_header
+    end
+
     def create_signals
       (0..ns-1).to_a.each do |signal_number|
         @signals[signal_number] ||= Signal.new()
@@ -190,12 +202,25 @@ module Edfize
       calculate_physical_values!()
     end
 
+    def load_digital_signals_by_epoch(epoch_number, epoch_size)
+      size_of_data_record_in_bytes = @signals.collect(&:samples_per_data_record).inject(:+).to_i * SIZE_OF_SAMPLE_IN_BYTES
+      data_records_to_retrieve = (epoch_size / @duration_of_a_data_record rescue 0)
+      length_of_bytes_to_read = (data_records_to_retrieve+1) * size_of_data_record_in_bytes
+      epoch_offset_size = epoch_number * epoch_size * size_of_data_record_in_bytes # TODO: The size in bytes of an epoch
+
+      all_signal_data = (IO.binread(@filename, length_of_bytes_to_read, size_of_header + epoch_offset_size).unpack('s<*') rescue [])
+      load_signal_data(all_signal_data, data_records_to_retrieve+1)
+    end
+
     # 16-bit signed integer size = 2 Bytes = 2 ASCII characters
     # 16-bit signed integer in "Little Endian" format (least significant byte first)
     # unpack:  s<         16-bit signed, (little-endian) byte order
     def load_digital_signals
-      @all_signal_data = IO.binread(@filename, nil, size_of_header).unpack('s<*')
+      all_signal_data = IO.binread(@filename, nil, size_of_header).unpack('s<*')
+      load_signal_data(all_signal_data, @number_of_data_records)
+    end
 
+    def load_signal_data(all_signal_data, data_records_retrieved)
       all_samples_per_data_record = @signals.collect{|s| s.samples_per_data_record}
       total_samples_per_data_record = all_samples_per_data_record.inject(:+).to_i
 
@@ -206,11 +231,11 @@ module Edfize
         offset += samples_per_data_record
       end
 
-      (0..@number_of_data_records-1).to_a.each do |data_record_index|
+      (0..data_records_retrieved-1).to_a.each do |data_record_index|
         @signals.each_with_index do |signal, signal_index|
           read_start = data_record_index * total_samples_per_data_record + offsets[signal_index]
           (0..signal.samples_per_data_record - 1).to_a.each do |value_index|
-            signal.digital_values << @all_signal_data[read_start+value_index]
+            signal.digital_values << all_signal_data[read_start+value_index]
           end
         end
       end

data/lib/edfize/signal.rb

@@ -39,7 +39,7 @@ module Edfize
 
     # Physical value (dimension PhysiDim) = (ASCIIvalue-DigiMin)*(PhysiMax-PhysiMin)/(DigiMax-DigiMin) + PhysiMin.
     def calculate_physical_values!
-      @physical_values = @digital_values.collect{|sample| ( sample - @digital_minimum ) * ( @physical_maximum - @physical_minimum ) / ( @digital_maximum - @digital_minimum) + @physical_minimum }
+      @physical_values = @digital_values.collect{|sample| (( sample - @digital_minimum ) * ( @physical_maximum - @physical_minimum ) / ( @digital_maximum - @digital_minimum) + @physical_minimum rescue nil) }
     end
 
     def samples

data/lib/edfize/version.rb

@@ -1,9 +1,9 @@
 module Edfize
   module VERSION #:nodoc:
     MAJOR = 0
-    MINOR = 1
+    MINOR = 2
     TINY = 0
-    BUILD = nil
+    BUILD = "beta1"
 
     STRING = [MAJOR, MINOR, TINY, BUILD].compact.join('.')
   end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: edfize
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.2.0.beta1
 platform: ruby
 authors:
 - Remo Mueller
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-05-28 00:00:00.000000000 Z
+date: 2014-08-12 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: colorize
@@ -92,9 +92,9 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
-  - - ">="
+  - - ">"
     - !ruby/object:Gem::Version
-      version: '0'
+      version: 1.3.1
 requirements: []
 rubyforge_project: 
 rubygems_version: 2.2.2