ecf_classify 1.0.0 → 1.0.1

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA256:
3
- metadata.gz: 312243cd7a9a732057536db8ea083a5747eb4b03da3d3924a03fe4658ee2cacf
4
- data.tar.gz: 25b64a52903763a62055f4e89a5b7c772ebceb6643621188a11d2296056d1b9a
3
+ metadata.gz: 766e33cb819c529e6a5f1726736379ca33319ef7fc0b724300600e61663a8486
4
+ data.tar.gz: dd4a1adc9a60a254e958e19a882ce668e6f92344b7929edeb6176014865c468b
5
5
  SHA512:
6
- metadata.gz: 9d7e7a10ff4eb41eade8b507be5e9d6031f9d88bb40b8e3115f67b1175e5a817cae1813697aad391eb686a305ec80eda5e27fbcdd2b8d24f2b939f8a4cb51b9c
7
- data.tar.gz: d77a4fd1d841d52405c24b6d96900538f60df059ee6161a012c49123067ee8125b02ee5d3c6ddcd0938b07914c52e1108f269c6baae04cacca32c39aa422ea10
6
+ metadata.gz: ef78c97a64fad2b232dfe4d8c2843ecfa597e8ece978b42f6600b29ea18e292c47be0cde51937dddd658afc0e72611c584bfb5146f837a58a782c5269b40746e
7
+ data.tar.gz: 7374767ba31ef7d967021a22fda7a41e8c31f382c63922e21431dbf7b63565b48dede727b524f42ff0f5b66966541978a6038f28cf5b879f4ed4f786b4605fe5
data/README.md CHANGED
@@ -1,4 +1,4 @@
1
- # EcfClassify
1
+ # ECF Classify
2
2
 
3
3
  Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/ecf_classify`. To experiment with that code, run `bin/console` for an interactive prompt.
4
4
 
@@ -6,6 +6,16 @@ TODO: Delete this and the text above, and describe your gem
6
6
 
7
7
  ## Installation
8
8
 
9
+ ### As a command line tool
10
+
11
+ You can install `ecf_classify` with the ruby package manager
12
+
13
+ ```bash
14
+ gem install ecf_classify
15
+ ```
16
+
17
+ ### As a Ruby module
18
+
9
19
  Add this line to your application's Gemfile:
10
20
 
11
21
  ```ruby
@@ -26,13 +36,13 @@ Or install it yourself as:
26
36
  ### General
27
37
  ```
28
38
  ecf_classify commands:
39
+ ecf_classify --version # print the version
29
40
  ecf_classify groups [FILE] # Classifies protein sequences into ECF groups
30
41
  ecf_classify help [COMMAND] # Describe available commands or one specific command
31
42
  ecf_classify subgroups [FILE] # Classifies protein sequences into ECF subgroups
32
43
 
33
44
  Options:
34
45
  -h, [--help], [--no-help]
35
-
36
46
  ```
37
47
 
38
48
  ### Groups
data/lib/ecf_classify.rb CHANGED
@@ -6,8 +6,15 @@ require 'thor'
6
6
 
7
7
  module EcfClassify
8
8
  class CLI < Thor
9
- package_name "ecf_classify"
9
+ package_name "#{EcfClassify::NAME}"
10
10
  class_option :help, aliases: "-h", type: :boolean
11
+ map %w[--version] => :__print_version
12
+
13
+ desc "--version", "print the version"
14
+ def __print_version
15
+ puts "#{EcfClassify::NAME}: #{EcfClassify::VERSION}"
16
+ exit
17
+ end
11
18
 
12
19
  desc "groups [FILE]", "Classifies protein sequences into ECF groups"
13
20
  method_option :probabilities, type: :string, aliases: "-p", default: nil
@@ -1,4 +1,4 @@
1
1
  module EcfClassify
2
- VERSION = "1.0.0"
2
+ VERSION = "1.0.1"
3
3
  NAME = 'ecf_classify'
4
4
  end
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: ecf_classify
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.0.0
4
+ version: 1.0.1
5
5
  platform: ruby
6
6
  authors:
7
7
  - Delia Casas Pastor
@@ -9,7 +9,7 @@ authors:
9
9
  autorequire:
10
10
  bindir: exe
11
11
  cert_chain: []
12
- date: 2019-10-14 00:00:00.000000000 Z
12
+ date: 2019-10-15 00:00:00.000000000 Z
13
13
  dependencies:
14
14
  - !ruby/object:Gem::Dependency
15
15
  name: bundler