dwc_agent 1.5.0.3 → 1.5.0.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/dwc_agent/cleaner.rb +4 -4
- data/lib/dwc_agent/constants.rb +58 -20
- data/lib/dwc_agent/parser.rb +1 -1
- data/lib/dwc_agent/version.rb +1 -1
- metadata +6 -6
checksums.yaml
CHANGED
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 26a7fa1547beb6246aa87724bc5c2d84180a976f6e5406b021692512c993ab73
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data.tar.gz: f689ae5d4dc3f7cf988327261608695ddc5028f58815f499d5e38b964300b43d
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 95f21ea53d2bff84f2f034699df0adb86c1e30756129f8ada445e3cff65894b416586029d527de6b704c69623e568400c2228c882283e7b9f2e5b3645289fbeb
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data.tar.gz: 4c169658b93e82bb4a6a1d5cd3283e9405ee90d987943bfa07d693649bb655ef43bca19afff52cfb86e39e39fa180c5705f686af7b88a1dcc57a8fb655d2481a
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data/lib/dwc_agent/cleaner.rb
CHANGED
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@@ -18,10 +18,6 @@ module DwcAgent
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def clean(parsed_namae)
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blank_name = { title: nil, appellation: nil, given: nil, particle: nil, family: nil, suffix: nil }
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if parsed_namae.family && FAMILY_BLACKLIST.any?{ |s| s.casecmp(parsed_namae.family) == 0 }
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return blank_name
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end
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if parsed_namae.given && GIVEN_BLACKLIST.any?{ |s| s.casecmp(parsed_namae.given) == 0 }
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return blank_name
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end
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@@ -79,6 +75,10 @@ module DwcAgent
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parsed_namae.given = NameCase(parsed_namae.given)
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end
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if parsed_namae.family && FAMILY_BLACKLIST.any?{ |s| s.casecmp(parsed_namae.family) == 0 }
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return blank_name
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end
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parsed_namae.normalize_initials
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family = parsed_namae.family.gsub(/\.\z/, '').strip rescue nil
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data/lib/dwc_agent/constants.rb
CHANGED
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@@ -3,18 +3,20 @@ module DwcAgent
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^[\[{(]|
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[\]})]\??$|
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(?i:acc\s?\#)|
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[,;]?\s*(?i:1st|2nd|3rd|[4-9]th)|
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\s*?\d+\.\d+|
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\b\d+\(?(?i:[[:alpha:]])\)?\b|
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\b[,;]?\s*(?i:et\.?\s+al|&\s+al)\.?|
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\b[,;]?\s*(?i:etal)\.?|
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\b\s+(bis|ter)(\b|\z)|
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\bu\.\s*a\.|
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-
\b[,;]?\s*(?i:and|&)?\s*(?i:others)\s*\b|
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\b[,;]?\s*(?i:and|&)?\s*(?i:others|party)\s*\b|
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\b[,;]?\s*(?i:etc)\.?|
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\b[,;]?\s*(?i:on)\b|
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\b[,;]?\s*(?i:unkn?own)\b|
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\b[,;]?\s*(?i:n/a)\b|
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\b[,;]?\s*(?i:ann?onymous)\b|
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\b[,;]?\s*\(?(?i:undetermined|indeterminable|dummy|interim|accession|ill(eg|is)ible|scripsit|presumed
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\b[,;]?\s*\(?(?i:undetermined|indeterminable|dummy|interim|accession|ill(eg|is)ible|scripsit|presumed?|presumably)\)?\b|
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\b[,;]?\s*(?i:importer|gift)\:?\b|
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\b[,;]?\s*(?i:string)\b|
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\b[,;]?\s*(?i:person\s*string)\b|
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@@ -48,34 +50,38 @@ module DwcAgent
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\d+\s+(?i:Oct|Octob(er|re))\.?\b|
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\d+\s+(?i:Nov|Novemb(er|re))\.?\b|
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\d+\s+(?i:Dec|D(e|é)cemb(er|re))\.?\b|
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-
\b[.-–,;:/]?\s*(?i:Alabama|Alaska|Arizona|Arkansas|California|Colorado|Connecticut|Delaware|Evergreen|Florida|
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\b[.,;:/]?\s*?(?i:Afghanistan|Åland Islands|Albania|Algeria|American Samoa|Andorra|Angola|Anguilla|Antarctica|Antigua and Barbuda|Argentina|Armenia|Aruba|Australia|Austria|Azerbaijan|Bahamas|Bahrain|Bangladesh|Barbados|Belarus|Belgium|Belize|Benin|Bermuda|Bhutan|Bolivia \(Plurinational State of\)|Bonaire, Sint Eustatius and Saba|Bosnia and Herzegovina|Botswana|Bouvet Island|Brazil|British Indian Ocean Territory|Brunei Darussalam|Bulgaria|Burkina Faso|Burundi|Cabo Verde|Cambodia|Cameroon|Canada|Cayman Islands|Central African Republic|Chad|Chile|China|Christmas Island|Cocos \(Keeling\) Islands|Colombia|Comoros|Congo|Congo \(Democratic Republic of the\)|Cook Islands|Costa Rica|Côte d'Ivoire|Croatia|Cuba|Curaçao|Cyprus|Czechia|Denmark|Djibouti|Dominica|Dominican Republic|Ecuador|Egypt|El Salvador|Equatorial Guinea|Eritrea|Estonia|Ethiopia|Falkland Islands \(Malvinas\)|Faroe Islands|Fiji|Finland|France|French Guiana|French Polynesia|French Southern Territories|Gabon|Gambia|
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\b[.-–,;:/]?\s*(?i:Alabama|Alaska|Arizona|Arkansas|California|Colorado|Connecticut|Delaware|Evergreen|Florida|Hawaii|Idaho|Illinois|Indiana|Iowa|Kansas|Kentucky|Louisiana|Maine|Maryland|Massachusetts|Michigan|Minnesota|Mississippi|Missouri|Montana|Nebraska|Nevada|New\s+Hampshire|New\s+Jersey|New\s+Mexico|New\s+York|North\s+Carolina|North\s+Dakota|Ohio|Oklahoma|Oregon|Pennsylvania|Portland|Rhode\s+Island|South\s+Carolina|South\s+Dakota|St\s+Petersburg|Tennessee|Texas|Utah|Vermont|Washington|West\s+Virginia|Wisconsin|Wyoming)\s+(?i:State)\s*\b|
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\b[.,;:/]?\s*?(?i:Afghanistan|Åland Islands|Albania|Algeria|American Samoa|Andorra|Angola|Anguilla|Antarctica|Antigua and Barbuda|Argentina|Armenia|Aruba|Australia|Austria|Azerbaijan|Bahamas|Bahrain|Bangladesh|Barbados|Belarus|Belgium|Belize|Benin|Bermuda|Bhutan|Bolivia \(Plurinational State of\)|Bonaire, Sint Eustatius and Saba|Bosnia and Herzegovina|Botswana|Bouvet Island|Brazil|British Indian Ocean Territory|Brunei Darussalam|Bulgaria|Burkina Faso|Burundi|Cabo Verde|Cambodia|Cameroon|Canada|Cayman Islands|Central African Republic|Chad|Chile|China|Christmas Island|Cocos \(Keeling\) Islands|Colombia|Comoros|Congo|Congo \(Democratic Republic of the\)|Cook Islands|Costa Rica|Côte d'Ivoire|Croatia|Cuba|Curaçao|Cyprus|Czechia|Denmark|Djibouti|Dominica|Dominican Republic|Ecuador|Egypt|El Salvador|Equatorial Guinea|Eritrea|Estonia|Ethiopia|Falkland Islands \(Malvinas\)|Faroe Islands|Fiji|Finland|France|French Guiana|French Polynesia|French Southern Territories|Gabon|Gambia|Germany|Ghana|Gibraltar|Greece|Greenland|Grenada|Guadeloupe|Guam|Guatemala|Guernsey|Guinea|Guinea-Bissau|Guyana|Haiti|Heard Island and McDonald Islands|Holy See|Honduras|Hong Kong|Hungary|Iceland|India|Indonesia|Iran \(Islamic Republic of\)|Iraq|Ireland|Isle of Man|Israel|Italy|Jamaica|Japan|Jersey|Kazakhstan|Kenya|Kiribati|Korea \(Democratic People\'s Republic of\)|Korea \(Republic of\)|Kuwait|Kyrgyzstan|Lao People\'s Democratic Republic|Latvia|Lebanon|Lesotho|Liberia|Libya|Liechtenstein|Lithuania|Luxembourg|Macao|Macedonia (the former Yugoslav Republic of)|Madagascar|Malawi|Malaysia|Maldives|Mali|Malta|Marshall Islands|Martinique|Mauritania|Mauritius|Mayotte|Mexico|Micronesia \(Federated States of\)|Moldova \(Republic of\)|Monaco|Mongolia|Montenegro|Montserrat|Morocco|Mozambique|Myanmar|Namibia|Nauru|Nepal|Netherlands|New Caledonia|New Zealand|Nicaragua|Niger|Nigeria|Niue|Norfolk Island|Northern Mariana Islands|Norway|Oman|Pakistan|Palau|Palestine, State of|Panama|Papua New Guinea|Paraguay|Peru|Philippines|Pitcairn|Poland|Portugal|Puerto Rico|Qatar|Réunion|Romania|Russian Federation|Rwanda|Saint Barthélemy|Saint Helena, Ascension and Tristan da Cunha|Saint Kitts and Nevis|Saint Lucia|Saint Martin \(French part\)|Saint Pierre and Miquelon|Saint Vincent and the Grenadines|Samoa|San Marino|Sao Tome and Principe|Saudi Arabia|Senegal|Serbia|Seychelles|Sierra Leone|Singapore|Sint Maarten \(Dutch part\)|Slovakia|Slovenia|Solomon Islands|Somalia|South Africa|South Georgia and the South Sandwich Islands|South Sudan|Spain|Sri Lanka|Sudan|Suriname|Svalbard and Jan Mayen|Swaziland|Sweden|Switzerland|Syrian Arab Republic|Taiwan|Tajikistan|Tanzania, United Republic of|Thailand|Timor-Leste|Togo|Tokelau|Tonga|Trinidad and Tobago|Tunisia|Turkey|Turkmenistan|Turks and Caicos Islands|Tuvalu|Uganda|Ukraine|United Arab Emirates|United Kingdom of Great Britain and Northern Ireland|United States of America|United States Minor Outlying Islands|Uruguay|Uzbekistan|Vanuatu|Venezuela \(Bolivarian Republic of\)|Viet Nam|Virgin Islands \(British\)|Virgin Islands \(U\.S\.\)|Wallis and Futuna|Western Sahara|Yemen|Zambia|Zimbabwe)\b|
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(?i:autres?\s+de|probab|likely|possibl(e|y)|doubtful)|
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\b\s*(?i:maybe)\s*\b|
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\b\s*(?i:prob)\.\s*\b|
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\(?[,]?\s*?(?i:(local)?\s?
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\(?[,]?\s*?(?i:(local)?\s?collectors?|data\s*recorder|netter|(oper|prepar)ator)\(?s?\)?\.?\:?|
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\b[.-–,;:]?\s*(?i:department|faculty)\s*?(?i:of)?\s*?(?i:entomology|biology|zoology)|
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(?i:Engº|Agrº|Fcº|Drº|Mº|Profº|Dº|Fº)|
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(?i:fide)\:?\s*\b|
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(?i:first\s+name\s+unknown)|
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(?i:game\s+dept)\.?\s*\b|
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(?i:see\s+notes?\s*(inside)?)|
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(?i:see\s+letter\s+enclosed)|
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(?i:(by)?\s+correspondance)|
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(?i:pers\.?\s
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(?i:pers\.?\s*comm\.?)|
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(?i:crossed\s+out)|
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(?i:(ohne|keine)\s+angaben)|
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\(?(?i:source)\(?|
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(?i:according\s+to)|
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(?i:lanuv)\d+|
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\b\s*name\b|
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\b\s*lost\b|
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(?i:nswobs)|
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ORCID|
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MRI(\s|-)PAS|
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urn\:qm\.qld\.gov\.au\:collector|
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(?i:University\s+of\s+(Southern\s+)?California(,\s+Berkeley)?)|
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(?i:
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(?i:
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(?i:field\s+museum\s+of\s+natural\s+history)|
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(?i:american\s+museum\s+of\s+natural\s+history)|
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(?i:The\s+Paleontological\s+Research\s+Institution)|
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(?i:museums?\s+victoria)|
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\b\s*(?i:
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\b\s*(?i:united\s+states|russia)\s*\b|
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(?i:revised|photograph|fruits\s+only)|
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-?\s*(?i:sight\s+(id|identifi?cation))\.?\s*\b|
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-?\s*(?i:synonym(y|ie))|
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\b(?i:to\s+(sub)?spp?)\.?|
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(?i:nom\.?\s+rev\.?)|
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FNA|DAO|HUH|FDNMB|MNHN|PNI|USNM|ZMUC|CSIRO|ACAD|USGS|NAWQA|
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\b,?\s*(?i:para|topo|syn)?(?i:type)|
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AFSC\/POLISH\s+SORTING\s+CTR\.?|
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(?i:university|museum|exhibits?)|
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(?i:uqam)|
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(?i:sem\s+(colec?tor|data))|
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(?i:no\s+coll\.?(ector)?)|
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(?i:not?)\s+(?i:name|date|details?|specific)?\s*?(?i:given|name|date|noted)|
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(?i:non?)\s+(?i:specificato)|
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\b[,;]\s+\d+\z|
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["!@?]|
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[,]?\d+|
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[–|ǀ∣｜│&+\/;:]|
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\s+-\s+|
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\s+a\.\s+|
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\b(e|y|i|en|et|or|per|for)\s*\b|
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\b(con|e|y|i|en|et|or|per|for)\s*\b|
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\b(?i:and|with)\s*\b|
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\b(?i:annotated(\s+by)?)\s*\b|
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\b(?i:coll\.)\s*\b|
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\b(?i:communicate?d(\s+to)?)\s*\b|
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\b(?i:conf\.?(\s+by)?|confirmed(\s+by)?)\s*\b|
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\b(?i:confirmada)(\s+por)?\s*\b|
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\b(?i:checked?(\s+by)?)\s*\b|
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\b(?i:det\.?(\s+by)?)\s*\b|
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\b(?i:dupl?\.?(\s+by)?|duplicate(\s+by)?)\s*\b|
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\b(?i:ex\.?(\s+by)?|examined(\s+by)?)\s*\b|
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\b(?i:in?dentified(\s+by)?)\s*\b|
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\b(?i:in\s+part(\s+by)?)\s*\b|
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\b(?i:och)\s*\b|
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\b(?i:prep\.?\s+(?i:by)?)\s*\b|
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\b(?i:purchased?)(\s+by)?\s*\b|
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\b(?i:redet\.?(\s+by?)?)\s*\b|
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\b(?i:reidentified(\s+by)?)\s*\b|
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\b(?i:stet)\s*\b|
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@@ -155,16 +167,24 @@ module DwcAgent
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'}' => '',
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'@' => '',
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'%' => '',
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'\\' => ''
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'\\' => '',
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'´' => '\'',
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'+' => ' | '
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}
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PHRASE_SUBS = {
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'
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'
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'
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'
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'
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'
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', ph.d.' => ' Ph.D.',
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', Ph.D.' => ' Ph.D.',
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', bro.' => ' Bro.',
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', Jr.,' => ' Jr.;',
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', Jr.' => ' Jr.',
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',Jr.' => ' Jr.',
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', Sr.' => ' Sr.',
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',Sr.' => ' Sr.',
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' jr.,' => ' Jr.;',
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' jr,' => ' Jr.;',
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'-jr' => ' Jr.',
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'-Jr' => ' Jr.'
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}
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COMPLEX_SEPARATORS = %r{
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@@ -229,7 +249,7 @@ module DwcAgent
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(?i:though)|
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(?i:texas\s+instruments?)\s*?(for)?|
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(?:tropical)|
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(?i:toward|seen
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(?i:toward|seen\s+at)|
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(?i:unidentified|unspecified|unk?nown?|unnamed|unread|unmistak|no agent)|
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(?i:urn\:)|
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(?i:usda|ucla)|
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@@ -238,29 +258,47 @@ module DwcAgent
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}x
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FAMILY_BLACKLIST = [
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"ap",
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"da",
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"de",
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"de'",
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"del",
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"der",
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"di",
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"do",
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"dos",
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"du",
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"el",
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"le",
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"la",
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"van",
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"von",
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"the",
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"of",
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"adjustment",
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"annotator",
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"available",
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|
"arachnology",
|
|
254
282
|
"catalogue",
|
|
255
283
|
"curators",
|
|
256
284
|
"data",
|
|
285
|
+
"details",
|
|
286
|
+
"determiner",
|
|
257
287
|
"determination",
|
|
258
288
|
"dissection",
|
|
259
289
|
"entered",
|
|
290
|
+
"erased",
|
|
291
|
+
"indecipherable",
|
|
260
292
|
"nomenclatural",
|
|
261
293
|
"orig",
|
|
262
294
|
"registration",
|
|
263
|
-
"science"
|
|
295
|
+
"science",
|
|
296
|
+
"wg",
|
|
297
|
+
"wm",
|
|
298
|
+
"wn",
|
|
299
|
+
"zw",
|
|
300
|
+
"zz",
|
|
301
|
+
"z-"
|
|
264
302
|
]
|
|
265
303
|
|
|
266
304
|
GIVEN_BLACKLIST = [
|
|
@@ -268,7 +306,7 @@ module DwcAgent
|
|
|
268
306
|
"has not"
|
|
269
307
|
]
|
|
270
308
|
|
|
271
|
-
TITLE = /\s*\b(sir|count(ess)?|colonel|(gen|adm|col|maj|capt|cmdr|lt|sgt|cpl|pvt|
|
|
309
|
+
TITLE = /\s*\b(sir|count(ess)?|colonel|(gen|adm|col|maj|major|capt|cmdr|lt|sgt|cpl|pvt|proff?|dr|md|ph\.?d|rev|mme|abbé|ptre|bro|esq)\.?|docteur|father|cantor|vicar|père|pastor|rabbi|reverend|pere|soeur|sister|professor)(\s+|$)/i
|
|
272
310
|
|
|
273
311
|
APPELLATION = /\s*\b((mrs?|ms|fr|hr)\.?|miss|herr|frau)(\s+|$)/i
|
|
274
312
|
|
data/lib/dwc_agent/parser.rb
CHANGED
|
@@ -20,7 +20,7 @@ module DwcAgent
|
|
|
20
20
|
@strip_out_regex = Regexp.new STRIP_OUT.to_s
|
|
21
21
|
@residual_terminators_regex = Regexp.new SPLIT_BY.to_s + %r{\s*\z}.to_s
|
|
22
22
|
@char_subs_regex = Regexp.new [CHAR_SUBS.keys.join].to_s
|
|
23
|
-
@phrase_subs_regex = Regexp.new PHRASE_SUBS.keys.join('|').to_s
|
|
23
|
+
@phrase_subs_regex = Regexp.new PHRASE_SUBS.keys.map{|a| Regexp.escape a }.join('|').to_s
|
|
24
24
|
@complex_separators_regex = Regexp.new COMPLEX_SEPARATORS.to_s
|
|
25
25
|
@add_separators_regex = Regexp.new %r{(\S{1}\.)([[:alpha:]]{2,})}.to_s
|
|
26
26
|
end
|
data/lib/dwc_agent/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: dwc_agent
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.5.0.
|
|
4
|
+
version: 1.5.0.8
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- David P. Shorthouse
|
|
8
|
-
autorequire:
|
|
8
|
+
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2020-
|
|
11
|
+
date: 2020-09-28 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: namae
|
|
@@ -102,7 +102,7 @@ homepage: https://github.com/bionomia/dwc_agent
|
|
|
102
102
|
licenses:
|
|
103
103
|
- MIT
|
|
104
104
|
metadata: {}
|
|
105
|
-
post_install_message:
|
|
105
|
+
post_install_message:
|
|
106
106
|
rdoc_options:
|
|
107
107
|
- "--encoding"
|
|
108
108
|
- UTF-8
|
|
@@ -119,8 +119,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
119
119
|
- !ruby/object:Gem::Version
|
|
120
120
|
version: '0'
|
|
121
121
|
requirements: []
|
|
122
|
-
rubygems_version: 3.
|
|
123
|
-
signing_key:
|
|
122
|
+
rubygems_version: 3.1.2
|
|
123
|
+
signing_key:
|
|
124
124
|
specification_version: 4
|
|
125
125
|
summary: Parse Darwin Core agent terms such as recordedBy and identifiedBy
|
|
126
126
|
test_files: []
|