dwc-archive 0.5.13 → 0.5.14

data/README.rdoc

@@ -25,7 +25,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
     # read content of the core data file into memory or used with a block
     # it returns array of arrays of data
     # rows that had a wrong encoding will be collected into errors array
-    data, errors = dwc.core.read 
+    data, errors = dwc.core.read
 
     # read content using a block with getting back results in sets 100 rows each
     results = []
@@ -45,18 +45,34 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
     results << [tail_data, tail_errors]
 
     # normalize names in classification collecting together synonyms, canonical names,
-    # vernacular names and associating paths to taxons in a classification 
+    # vernacular names and associating paths to taxons in a classification
     # distributed as DwCA file
     # NOTE: this functionality requires biodiversity gem for ruby 1.8.x and
     # biodiversity19 gem for ruby 1.9.x
 
     result = dwc.normalize_classification
 
+    # for a finer control over normalization:
+
+    cn = DarwinCore::ClassificationNormalizer.new(dwc)
+    cn.normalize
+
+    # to get a flat hash of nodes with attached vernacular names and synonyms
+    normalized_data = cn.normalized_data
+
+    # to get a representation of tree organization as a hash
+    classification_tree = cn.tree
+
+    # to get list of all name strings used as scientific or vernacular names
+    all_name_strings = cn.name_strings
+
+    # to get list of errors generated during the normalization
+    errors = cn.error_names
 
     DarwinCore.clean_all   # remove all expanded archives
 
 == Creating a DarwinCore Archive file
-    
+
     gen = DarwinCore::Generator.new('/tmp/dwc_birches.tar.gz')
 
     core = [
@@ -77,7 +93,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
     ]
 
     synonyms = [
-      ["http://rs.tdwg.org/dwc/terms/TaxonID", "http://rs.tdwg.org/dwc/terms/scientificName", "http://rs.tdwg.org/dwc/terms/taxonomicStatus"], 
+      ["http://rs.tdwg.org/dwc/terms/TaxonID", "http://rs.tdwg.org/dwc/terms/scientificName", "http://rs.tdwg.org/dwc/terms/taxonomicStatus"],
       [1, "Betila Linnaeus, 1753", 'misspelling']
     ]
 
@@ -89,7 +105,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
           :last_name => 'Doe',
           :email => 'jdoe@example.com' },
           { :first_name => 'Jane',
-            :last_name => 'Doe', 
+            :last_name => 'Doe',
             :email => 'jane@example.com' }
     ],
       :abstract => 'test classification',
@@ -106,7 +122,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
 
 
 == Note on Patches/Pull Requests
- 
+
 * Fork the project.
 * Make your feature addition or bug fix.
 * Add tests for it. This is important so I don't break it in a

data/VERSION

@@ -1 +1 @@
-0.5.13
+0.5.14

data/lib/dwc-archive/classification_normalizer.rb

@@ -88,6 +88,7 @@ class DarwinCore
     end
 
     def set_scientific_name(row, fields)
+      row[fields[:scientificname]] = 'N/A' unless row[fields[:scientificname]]
       canonical_name = fields[:scientificnameauthorship] ? row[fields[:scientificname]] : get_canonical_name(row[fields[:scientificname]])
       fields[:canonicalname] = row.size
       row << canonical_name

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: dwc-archive
 version: !ruby/object:Gem::Version 
-  hash: 17
-  prerelease: false
+  hash: 23
+  prerelease: 
   segments: 
   - 0
   - 5
-  - 13
-  version: 0.5.13
+  - 14
+  version: 0.5.14
 platform: ruby
 authors: 
 - Dmitry Mozzherin
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-04-07 00:00:00 -04:00
+date: 2011-05-25 00:00:00 -04:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -147,11 +147,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
 requirements: []
 
 rubyforge_project: 
-rubygems_version: 1.3.7
+rubygems_version: 1.5.2
 signing_key: 
 specification_version: 3
 summary: Handler of Darwin Core Archive files
-test_files: 
-- spec/lib/dwc-archive_spec.rb
-- spec/lib/xml_reader_soec.rb
-- spec/spec_helper.rb
+test_files: []
+