dwc-archive 0.5.13 → 0.5.14
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- data/README.rdoc +22 -6
- data/VERSION +1 -1
- data/lib/dwc-archive/classification_normalizer.rb +1 -0
- metadata +8 -10
data/README.rdoc
CHANGED
@@ -25,7 +25,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
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# read content of the core data file into memory or used with a block
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# it returns array of arrays of data
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# rows that had a wrong encoding will be collected into errors array
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-
data, errors = dwc.core.read
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+
data, errors = dwc.core.read
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# read content using a block with getting back results in sets 100 rows each
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results = []
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@@ -45,18 +45,34 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
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results << [tail_data, tail_errors]
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# normalize names in classification collecting together synonyms, canonical names,
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# vernacular names and associating paths to taxons in a classification
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# vernacular names and associating paths to taxons in a classification
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# distributed as DwCA file
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# NOTE: this functionality requires biodiversity gem for ruby 1.8.x and
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# biodiversity19 gem for ruby 1.9.x
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result = dwc.normalize_classification
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# for a finer control over normalization:
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cn = DarwinCore::ClassificationNormalizer.new(dwc)
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cn.normalize
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# to get a flat hash of nodes with attached vernacular names and synonyms
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normalized_data = cn.normalized_data
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# to get a representation of tree organization as a hash
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classification_tree = cn.tree
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# to get list of all name strings used as scientific or vernacular names
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all_name_strings = cn.name_strings
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# to get list of errors generated during the normalization
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errors = cn.error_names
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DarwinCore.clean_all # remove all expanded archives
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== Creating a DarwinCore Archive file
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-
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gen = DarwinCore::Generator.new('/tmp/dwc_birches.tar.gz')
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core = [
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@@ -77,7 +93,7 @@ Update to latest rubygems (v >= 1.3.6) which adds gemcutter sources by default.
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]
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synonyms = [
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["http://rs.tdwg.org/dwc/terms/TaxonID", "http://rs.tdwg.org/dwc/terms/scientificName", "http://rs.tdwg.org/dwc/terms/taxonomicStatus"],
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["http://rs.tdwg.org/dwc/terms/TaxonID", "http://rs.tdwg.org/dwc/terms/scientificName", "http://rs.tdwg.org/dwc/terms/taxonomicStatus"],
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[1, "Betila Linnaeus, 1753", 'misspelling']
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]
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:last_name => 'Doe',
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:email => 'jdoe@example.com' },
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{ :first_name => 'Jane',
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:last_name => 'Doe',
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:last_name => 'Doe',
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:email => 'jane@example.com' }
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],
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:abstract => 'test classification',
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== Note on Patches/Pull Requests
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-
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* Fork the project.
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* Make your feature addition or bug fix.
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* Add tests for it. This is important so I don't break it in a
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.5.
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0.5.14
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@@ -88,6 +88,7 @@ class DarwinCore
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end
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def set_scientific_name(row, fields)
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row[fields[:scientificname]] = 'N/A' unless row[fields[:scientificname]]
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canonical_name = fields[:scientificnameauthorship] ? row[fields[:scientificname]] : get_canonical_name(row[fields[:scientificname]])
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fields[:canonicalname] = row.size
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row << canonical_name
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
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--- !ruby/object:Gem::Specification
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name: dwc-archive
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version: !ruby/object:Gem::Version
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hash:
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prerelease:
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hash: 23
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prerelease:
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segments:
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- 0
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- 5
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-
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version: 0.5.
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- 14
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version: 0.5.14
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platform: ruby
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authors:
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- Dmitry Mozzherin
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@@ -15,7 +15,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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date: 2011-
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date: 2011-05-25 00:00:00 -04:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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@@ -147,11 +147,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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requirements: []
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rubyforge_project:
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rubygems_version: 1.
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rubygems_version: 1.5.2
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signing_key:
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specification_version: 3
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summary: Handler of Darwin Core Archive files
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test_files:
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-
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-
- spec/lib/xml_reader_soec.rb
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- spec/spec_helper.rb
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test_files: []
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