dwc-archive 0.9.6 → 1.1.1

data/spec/lib/gnub_taxon_spec.rb

@@ -0,0 +1,32 @@
+# frozen_string_literal: true
+
+describe DarwinCore::GnubTaxon do
+  subject(:dwca) { DarwinCore.new(file_path) }
+  subject(:normalizer) { DarwinCore::ClassificationNormalizer.new(dwca) }
+  let(:file_dir) { File.expand_path("../files", __dir__) }
+  let(:file_path) { File.join(file_dir, file_name) }
+  let(:file_name) { "gnub.tar.gz" }
+
+  it "should get uuids from GNUB" do
+    normalizer.normalize
+    tn = normalizer.normalized_data["9c399f90-cfb8-5a7f-9a21-18285a473488"]
+    expect(tn).to be_kind_of DarwinCore::GnubTaxon
+    expect(tn).to be_kind_of DarwinCore::TaxonNormalized
+    expect(tn.uuid).to eq "8faa91f6-663f-4cfe-b785-0ab4e9415a51"
+    expect(tn.uuid_path).to eq [
+      "9a9f9eeb-d5f9-4ff6-b6cb-a5ad345e33c3",
+      "bf4c91c0-3d1f-44c7-9d3b-249382182a26",
+      "8faa91f6-663f-4cfe-b785-0ab4e9415a51"
+    ]
+  end
+
+  context "not a gnub data" do
+    let(:file_name) { "data.tar.gz" }
+    it "should not be of GnubTaxon type" do
+      normalizer.normalize
+      tn = normalizer.normalized_data["leptogastrinae:tid:42"]
+      expect(tn).to be_kind_of DarwinCore::TaxonNormalized
+      expect(tn).not_to be_kind_of DarwinCore::GnubTaxon
+    end
+  end
+end

data/spec/lib/metadata_spec.rb

@@ -0,0 +1,89 @@
+# frozen_string_literal: true
+
+describe DarwinCore::Metadata do
+  subject(:eml) { DarwinCore::Metadata.new(dwca.archive) }
+  let(:dwca) { DarwinCore.new(file_path) }
+  let(:file_path) do
+    File.join(File.expand_path("../files", __dir__), file_name)
+  end
+  let(:file_name) { "data.tar.gz" }
+
+  describe ".new" do
+    it "initializes" do
+      expect(eml).to be_kind_of DarwinCore::Metadata
+    end
+  end
+
+  describe "#data" do
+    it "returns hash of metadata" do
+      expect(eml.data).to be_kind_of Hash
+    end
+  end
+
+  describe "#id" do
+    it "returns id of the archive if it exists" do
+      expect(eml.id).to eq "leptogastrinae:version:2.5"
+    end
+  end
+
+  describe "#package_id" do
+    context "no package id is given" do
+      before(:example) do
+        @attributes = eml.data[:eml].delete(:attributes)
+      end
+
+      after(:example) do
+        eml.data[:eml][:attributes] = @attributes
+      end
+
+      it "returns id of the DwCA file if exists" do
+        expect { eml.data[:eml][:attributes][:packageId] }.
+          to raise_exception NoMethodError
+        expect(eml.package_id).to be_nil
+      end
+    end
+  end
+
+  describe "#title" do
+    it "returns name of the archive" do
+      expect(eml.title).
+        to eq "Leptogastrinae (Diptera: Asilidae) Classification"
+    end
+  end
+
+  describe "#authors" do
+    it "returns authors of the archive" do
+      expect(eml.authors).
+        to eq [
+          { first_name: "Keith",
+            last_name: "Bayless",
+            email: "keith.bayless@gmail.com" },
+          { first_name: "Torsten",
+            last_name: "Dikow",
+            email: "dshorthouse@eol.org" }
+        ]
+    end
+
+    describe "#abstract" do
+      it "returns abstract of an article" do
+        expect(eml.abstract).
+          to eq "These are all the names in the Leptogastrinae classification."
+      end
+    end
+
+    describe "#citation" do
+      it "returns citation of the archive" do
+        expect(eml.citation).
+          to eq "Dikow, Torsten. 2010. The Leptogastrinae classification."
+      end
+    end
+
+    describe "#url" do
+      it "returns url to the archive" do
+        expect(eml.url).
+          to eq "http://leptogastrinae.lifedesks.org/files/leptogastrinae/"\
+                "classification_export/shared/leptogastrinae.tar.gz"
+      end
+    end
+  end
+end

data/spec/lib/taxon_normalized_spec.rb

@@ -0,0 +1,142 @@
+# frozen_string_literal: true
+
+describe DarwinCore::TaxonNormalized do
+  subject(:dwca) { DarwinCore.new(file_path) }
+  subject(:normalizer) { DarwinCore::ClassificationNormalizer.new(dwca) }
+  let(:file_dir) { File.expand_path("../files", __dir__) }
+
+  context "typical case" do
+    let(:file_path) { File.join(file_dir, "data.tar.gz") }
+    let(:normalized) { normalizer.normalize }
+    let(:tn) { normalized["leptogastrinae:tid:2681"] }
+
+    it "has TaxonNormalized type" do
+      expect(tn).to be_kind_of DarwinCore::TaxonNormalized
+    end
+
+    describe "#id" do
+      it "returns taxon_id" do
+        expect(tn.id).to eq "leptogastrinae:tid:2681"
+      end
+    end
+
+    describe "#local_id" do
+      it "returns local id" do
+        expect(tn.id).to eq "leptogastrinae:tid:2681"
+      end
+    end
+
+    describe "#global_id" do
+      it "returns global id" do
+        expect(tn.global_id).to eq "843ff0df-4bcd-4aad-ba94-643f8695a292"
+      end
+    end
+
+    describe "#source" do
+      it "returns url to the data" do
+        expect(tn.source).
+          to eq "http://leptogastrinae.lifedesks.org/pages/2681"
+      end
+    end
+
+    describe "#parent_id" do
+      it "returns ancestor's id" do
+        expect(tn.parent_id).to eq "leptogastrinae:tid:2584"
+      end
+    end
+
+    describe "#classification_path_id" do
+      it "returns an array" do
+        expect(tn.classification_path_id).to be_kind_of Array
+      end
+
+      it "returns ids of classification path elements" do
+        expect(tn.classification_path_id).
+          to eq ["leptogastrinae:tid:42",
+                 "leptogastrinae:tid:2045",
+                 "leptogastrinae:tid:2584",
+                 "leptogastrinae:tid:2681"]
+      end
+    end
+
+    describe "#classification_path" do
+      let(:cp) { tn.classification_path }
+      it "returns array of name strings of the classification path" do
+        expect(cp).to be_kind_of Array
+        expect(cp).to eq ["Leptogastrinae",
+                          "Leptogastrini",
+                          "Leptogaster",
+                          "Leptogaster flavipes"]
+      end
+    end
+
+    describe "#linnean_classification_path" do
+      it "returns empty array for parent/child based classification" do
+        expect(tn.linnean_classification_path).to be_kind_of Array
+        expect(tn.linnean_classification_path).to be_empty
+      end
+    end
+
+    describe "#current_name" do
+      it "returns name marked as currently valid for the taxon" do
+        expect(tn.current_name).to eq "Leptogaster flavipes Loew, 1862"
+      end
+    end
+
+    describe "#current_name_canonical" do
+      it "returns canonical form of valid name" do
+        expect(tn.current_name_canonical).to eq "Leptogaster flavipes"
+      end
+    end
+
+    describe "#synonyms" do
+      context "synonyms not found" do
+        it "returns empty array" do
+          expect(tn.synonyms).to be_kind_of Array
+          synonym = tn.synonyms[0]
+          expect(synonym).to be_kind_of DarwinCore::SynonymNormalized
+          expect(synonym).to be_kind_of Struct
+        end
+      end
+
+      context "synonyms found" do
+        let(:tn) { normalized["leptogastrinae:tid:2858"] }
+        it "returns array of synonyms" do
+          expect(tn.synonyms).to be_kind_of Array
+          expect(tn.synonyms).to be_empty
+        end
+      end
+    end
+
+    describe "#vernacular_names" do
+      context "vernacular names not found" do
+        it "returns empty array" do
+          expect(tn.vernacular_names).to be_kind_of Array
+          expect(tn.vernacular_names).to be_empty
+        end
+      end
+
+      context "vernacular names found" do
+        let(:tn) { normalized["leptogastrinae:tid:42"] }
+        it "returns array with vernacular name structure" do
+          expect(tn.vernacular_names).to be_kind_of Array
+          vn = tn.vernacular_names[0]
+          expect(vn).to be_kind_of DarwinCore::VernacularNormalized
+          expect(vn).to be_kind_of Struct
+        end
+      end
+    end
+
+    describe "#rank" do
+      it "returns rank of the taxon" do
+        expect(tn.rank).to eq "species"
+      end
+    end
+
+    describe "#status" do
+      it "returns status of taxon" do
+        expect(tn.status).to be_nil
+      end
+    end
+  end
+end

data/spec/lib/xml_reader_spec.rb

@@ -1,15 +1,15 @@
-require File.expand_path(File.dirname(__FILE__) + "/../spec_helper")
+# frozen_string_literal: true
 
-describe "DarwinCore::XmlReader" do 
-  it "should parse xml to hash" do
-    DarwinCore::XmlReader.public_methods.map { |i| i.to_s }.include?("from_xml").should be_true
-  end
+describe DarwinCore::XmlReader do
+  describe ".from_xml" do
+    let(:file) { File.expand_path("../files/meta.xml", __dir__) }
+    subject { DarwinCore::XmlReader.from_xml(File.read(file)) }
 
-  it "should parse xml" do
-    xml_string = open(File.dirname(__FILE__) + "/../files/meta.xml").read
-    meta = DarwinCore::XmlReader.from_xml(xml_string)
-    meta[:archive].keys.map {|k| k.to_s}.sort.should == %w(core extension)
-    meta[:archive][:core].keys.map{|k| k.to_s}.sort.should == ["attributes", "field", "files", "id"]
+    it "reads xml to hash" do
+      expect(subject).to be_kind_of Hash
+      expect(subject[:archive].keys.sort).to eq %i[core extension]
+      expect(subject[:archive][:core].keys.sort).
+        to eq %i[attributes field files id]
+    end
   end
-
 end

data/spec/spec_helper.rb

@@ -1,9 +1,81 @@
-$LOAD_PATH.unshift(File.dirname(__FILE__))
-$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
-require 'dwc-archive'
-require 'rspec'
-require 'rspec/autorun'
+# frozen_string_literal: true
 
-RSpec.configure do |config|
+require "dwc_archive"
+require "rspec"
+require "rspec/mocks"
+require "socket"
 
+RSpec.configure do
+end
+
+unless defined?(SPEC_CONSTANTS)
+  EML_DATA =
+    {
+      id: "1234",
+      license: "http://creativecommons.org/licenses/by-sa/3.0/",
+      title: "Test Classification",
+      authors: [
+        { first_name: "John",
+          last_name: "Doe",
+          email: "jdoe@example.com",
+          organization: "Example",
+          position: "Assistant Professor",
+          url: "http://example.org" },
+        { first_name: "Jane",
+          last_name: "Doe",
+          email: "jane@example.com" }
+      ],
+      metadata_providers: [
+        { first_name: "Jim",
+          last_name: "Doe",
+          email: "jimdoe@example.com",
+          url: "http://aggregator.example.org" }
+      ],
+      abstract: "test classification",
+      citation:
+        "Test classification: Doe John, Doe Jane, Taxnonmy, 10, 1, 2010",
+      url: "http://example.com"
+    }.freeze
+  META_DATA = {
+    extensions:
+      [
+        { fields:
+            [
+              "http://rs.tdwg.org/dwc/terms/TaxonID",
+              "http://rs.tdwg.org/dwc/terms/vernacularName"
+            ],
+          ignoreHeaderLines: 1,
+          location: "vern.csv",
+          rowType: "http://rs.gbif.org/terms/1.0/VernacularName" }
+      ],
+    core: { fields:
+              [
+                "http://rs.tdwg.org/dwc/terms/taxonID",
+                "http://rs.tdwg.org/dwc/terms/parentNameUsageID",
+                "http://rs.tdwg.org/dwc/terms/scientificName",
+                "http://rs.tdwg.org/dwc/terms/taxonRank"
+              ],
+            ignoreHeaderLines: 1,
+            location: "core.csv" }
+  }.freeze
+  CORE_DATA = [
+    ["http://rs.tdwg.org/dwc/terms/taxonID",
+     "http://rs.tdwg.org/dwc/terms/parentNameUsageID",
+     "http://rs.tdwg.org/dwc/terms/scientificName",
+     "http://rs.tdwg.org/dwc/terms/taxonRank"],
+    [1, 0, "Plantae", "kingdom"],
+    [2, 1, "Betula", "genus"],
+    [3, 2, "Betula verucosa", "species"]
+  ].freeze
+  EXTENSION_DATA = [
+    ["http://rs.tdwg.org/dwc/terms/TaxonID",
+     "http://rs.tdwg.org/dwc/terms/vernacularName"],
+    [1, "Plants"],
+    [1, "Растения"],
+    [2, "Birch"],
+    [2, "Береза"],
+    [3, "Wheeping Birch"],
+    [3, "Береза плакучая"]
+  ].freeze
+  SPEC_CONSTANTS = true
 end

metadata

@@ -1,176 +1,221 @@
 --- !ruby/object:Gem::Specification
 name: dwc-archive
 version: !ruby/object:Gem::Version
-  version: 0.9.6
-  prerelease: 
+  version: 1.1.1
 platform: ruby
 authors:
 - Dmitry Mozzherin
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-06-21 00:00:00.000000000 Z
+date: 2020-06-04 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.5'
+        version: '1.10'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.5'
+        version: '1.10'
 - !ruby/object:Gem::Dependency
-  name: parsley-store
+  name: biodiversity
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.3.2
+        version: '4'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.3.2
+        version: '4'
 - !ruby/object:Gem::Dependency
-  name: archive-tar-minitar
+  name: byebug
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.5'
-  type: :runtime
+        version: '11.1'
+  type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.5'
+        version: '11.1'
 - !ruby/object:Gem::Dependency
-  name: debugger
+  name: bundler
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.3'
+        version: '2.1'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ~>
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.3'
+        version: '2.1'
 - !ruby/object:Gem::Dependency
-  name: parsley-store
+  name: cucumber
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.3.0
-  type: :runtime
+        version: '4'
+  type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.3.0
+        version: '4'
+- !ruby/object:Gem::Dependency
+  name: git
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.7'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.7'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13'
 - !ruby/object:Gem::Dependency
   name: rspec
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.2.9
+        version: '3.9'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.2.9
+        version: '3.9'
 - !ruby/object:Gem::Dependency
-  name: cucumber
+  name: rubocop
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.85'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.85'
+- !ruby/object:Gem::Dependency
+  name: solargraph
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.39'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
-    - - ! '>='
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.39'
+- !ruby/object:Gem::Dependency
+  name: travis
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1.9'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.9'
 description: Darwin Core Archive is the current standard exchange format for GLobal
   Names Architecture modules. This gem makes it easy to incorporate files in Darwin
   Core Archive format into a ruby project.
-email: dmozzherin at gmail dot com
+email:
+- dmozzherin at gmail dot com
 executables: []
 extensions: []
-extra_rdoc_files:
-- LICENSE
-- README.md
+extra_rdoc_files: []
 files:
-- .document
-- .rvmrc
-- .travis.yml
+- ".document"
+- ".gitignore"
+- ".rspec"
+- ".rubocop.yml"
+- ".ruby-version"
+- ".travis.yml"
 - CHANGELOG
 - Gemfile
-- Gemfile.lock
 - LICENSE
 - README.md
 - Rakefile
-- VERSION
+- dwc-archive.gemspec
 - features/dwca-creator.feature
 - features/dwca-reader.feature
 - features/step_definitions/dwc-creator_steps.rb
 - features/step_definitions/dwc-reader_steps.rb
 - features/support/env.rb
-- lib/dwc-archive.rb
-- lib/dwc-archive/.expander.rb.swo
-- lib/dwc-archive/archive.rb
-- lib/dwc-archive/classification_normalizer.rb
-- lib/dwc-archive/core.rb
-- lib/dwc-archive/errors.rb
-- lib/dwc-archive/expander.rb
-- lib/dwc-archive/extension.rb
-- lib/dwc-archive/generator.rb
-- lib/dwc-archive/generator_eml_xml.rb
-- lib/dwc-archive/generator_meta_xml.rb
-- lib/dwc-archive/ingester.rb
-- lib/dwc-archive/metadata.rb
-- lib/dwc-archive/utf_regex_ruby18.rb
-- lib/dwc-archive/xml_reader.rb
+- lib/dwc_archive.rb
+- lib/dwc_archive/archive.rb
+- lib/dwc_archive/classification_normalizer.rb
+- lib/dwc_archive/core.rb
+- lib/dwc_archive/errors.rb
+- lib/dwc_archive/expander.rb
+- lib/dwc_archive/extension.rb
+- lib/dwc_archive/generator.rb
+- lib/dwc_archive/generator_eml_xml.rb
+- lib/dwc_archive/generator_meta_xml.rb
+- lib/dwc_archive/gnub_taxon.rb
+- lib/dwc_archive/ingester.rb
+- lib/dwc_archive/metadata.rb
+- lib/dwc_archive/taxon_normalized.rb
+- lib/dwc_archive/version.rb
+- lib/dwc_archive/xml_reader.rb
 - spec/files/broken.tar.gz
 - spec/files/data.tar.gz
 - spec/files/data.zip
 - spec/files/data_with_quotes.tar.gz
 - spec/files/eml.xml
 - spec/files/empty_coreid.tar.gz
-- spec/files/file with characters(3).gz
+- spec/files/file with characters(3).tar.gz
 - spec/files/flat_list.tar.gz
+- spec/files/generator_eml.xml
+- spec/files/generator_meta.xml
 - spec/files/gnub.tar.gz
 - spec/files/invalid.tar.gz
 - spec/files/junk_dir_inside.zip
@@ -185,35 +230,78 @@ files:
 - spec/files/synonyms_in_core_accepted_name_field.tar.gz
 - spec/files/synonyms_in_extension.tar.gz
 - spec/files/uncompressed
-- spec/lib/dwc-archive_spec.rb
+- spec/lib/classification_normalizer_spec.rb
+- spec/lib/core_spec.rb
+- spec/lib/darwin_core_spec.rb
+- spec/lib/generator_eml_xml_spec.rb
+- spec/lib/generator_meta_xml_spec.rb
+- spec/lib/generator_spec.rb
+- spec/lib/gnub_taxon_spec.rb
+- spec/lib/metadata_spec.rb
+- spec/lib/taxon_normalized_spec.rb
 - spec/lib/xml_reader_spec.rb
-- spec/spec.opts
 - spec/spec_helper.rb
 homepage: http://github.com/GlobalNamesArchitecture/dwc-archive
-licenses: []
+licenses:
+- MIT
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
-      version: '0'
-      segments:
-      - 0
-      hash: 2372622078447411988
+      version: 2.5.0
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project: 
-rubygems_version: 1.8.25
+rubygems_version: 3.1.2
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: Handler of Darwin Core Archive files
-test_files: []
+test_files:
+- features/dwca-creator.feature
+- features/dwca-reader.feature
+- features/step_definitions/dwc-creator_steps.rb
+- features/step_definitions/dwc-reader_steps.rb
+- features/support/env.rb
+- spec/files/broken.tar.gz
+- spec/files/data.tar.gz
+- spec/files/data.zip
+- spec/files/data_with_quotes.tar.gz
+- spec/files/eml.xml
+- spec/files/empty_coreid.tar.gz
+- spec/files/file with characters(3).tar.gz
+- spec/files/flat_list.tar.gz
+- spec/files/generator_eml.xml
+- spec/files/generator_meta.xml
+- spec/files/gnub.tar.gz
+- spec/files/invalid.tar.gz
+- spec/files/junk_dir_inside.zip
+- spec/files/language_locality.tar.gz
+- spec/files/latin1.tar.gz
+- spec/files/linnean.tar.gz
+- spec/files/meta.xml
+- spec/files/minimal.tar.gz
+- spec/files/not_synonym_in_extension.tar.gz
+- spec/files/sci_name_authorship.tar.gz
+- spec/files/sci_name_authorship_dup.tar.gz
+- spec/files/synonyms_in_core_accepted_name_field.tar.gz
+- spec/files/synonyms_in_extension.tar.gz
+- spec/files/uncompressed
+- spec/lib/classification_normalizer_spec.rb
+- spec/lib/core_spec.rb
+- spec/lib/darwin_core_spec.rb
+- spec/lib/generator_eml_xml_spec.rb
+- spec/lib/generator_meta_xml_spec.rb
+- spec/lib/generator_spec.rb
+- spec/lib/gnub_taxon_spec.rb
+- spec/lib/metadata_spec.rb
+- spec/lib/taxon_normalized_spec.rb
+- spec/lib/xml_reader_spec.rb
+- spec/spec_helper.rb