dwc-archive 0.9.10 → 1.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. checksums.yaml +5 -5
  2. data/.gitignore +1 -0
  3. data/.rspec +2 -1
  4. data/.rubocop.yml +23 -0
  5. data/.ruby-version +1 -1
  6. data/.travis.yml +4 -7
  7. data/CHANGELOG +14 -8
  8. data/Gemfile +3 -1
  9. data/LICENSE +1 -1
  10. data/README.md +119 -107
  11. data/Rakefile +13 -36
  12. data/dwc-archive.gemspec +23 -19
  13. data/features/step_definitions/dwc-creator_steps.rb +5 -5
  14. data/features/step_definitions/dwc-reader_steps.rb +47 -28
  15. data/features/support/env.rb +1 -1
  16. data/lib/dwc_archive.rb +124 -0
  17. data/lib/dwc_archive/archive.rb +60 -0
  18. data/lib/dwc_archive/classification_normalizer.rb +382 -0
  19. data/lib/dwc_archive/core.rb +25 -0
  20. data/lib/{dwc-archive → dwc_archive}/errors.rb +10 -0
  21. data/lib/dwc_archive/expander.rb +88 -0
  22. data/lib/{dwc-archive → dwc_archive}/extension.rb +5 -3
  23. data/lib/dwc_archive/generator.rb +91 -0
  24. data/lib/dwc_archive/generator_eml_xml.rb +116 -0
  25. data/lib/dwc_archive/generator_meta_xml.rb +72 -0
  26. data/lib/dwc_archive/gnub_taxon.rb +14 -0
  27. data/lib/dwc_archive/ingester.rb +106 -0
  28. data/lib/dwc_archive/metadata.rb +57 -0
  29. data/lib/dwc_archive/taxon_normalized.rb +23 -0
  30. data/lib/dwc_archive/version.rb +6 -0
  31. data/lib/dwc_archive/xml_reader.rb +90 -0
  32. data/spec/files/file with characters(3).gz b/data/spec/files/file with → characters(3).tar.gz +0 -0
  33. data/spec/files/generator_eml.xml +47 -0
  34. data/spec/files/generator_meta.xml +19 -0
  35. data/spec/lib/classification_normalizer_spec.rb +96 -105
  36. data/spec/lib/core_spec.rb +43 -41
  37. data/spec/lib/darwin_core_spec.rb +108 -138
  38. data/spec/lib/generator_eml_xml_spec.rb +12 -11
  39. data/spec/lib/generator_meta_xml_spec.rb +12 -11
  40. data/spec/lib/generator_spec.rb +77 -69
  41. data/spec/lib/gnub_taxon_spec.rb +15 -17
  42. data/spec/lib/metadata_spec.rb +50 -41
  43. data/spec/lib/taxon_normalized_spec.rb +62 -65
  44. data/spec/lib/xml_reader_spec.rb +9 -12
  45. data/spec/spec_helper.rb +54 -51
  46. metadata +105 -88
  47. data/.rvmrc +0 -1
  48. data/] +0 -40
  49. data/lib/dwc-archive.rb +0 -107
  50. data/lib/dwc-archive/archive.rb +0 -40
  51. data/lib/dwc-archive/classification_normalizer.rb +0 -428
  52. data/lib/dwc-archive/core.rb +0 -17
  53. data/lib/dwc-archive/expander.rb +0 -84
  54. data/lib/dwc-archive/generator.rb +0 -85
  55. data/lib/dwc-archive/generator_eml_xml.rb +0 -86
  56. data/lib/dwc-archive/generator_meta_xml.rb +0 -58
  57. data/lib/dwc-archive/ingester.rb +0 -101
  58. data/lib/dwc-archive/metadata.rb +0 -48
  59. data/lib/dwc-archive/version.rb +0 -3
  60. data/lib/dwc-archive/xml_reader.rb +0 -64
data/lib/dwc-archive/version.rb DELETED
@@ -1,3 +0,0 @@
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- class DarwinCore
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- VERSION = "0.9.10"
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- end
data/lib/dwc-archive/xml_reader.rb DELETED
@@ -1,64 +0,0 @@
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- # USAGE: Hash.from_xml:(YOUR_XML_STRING)
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- require 'nokogiri'
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- # modified from
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- # http://stackoverflow.com/questions/1230741/
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- # convert-a-nokogiri-document-to-a-ruby-hash/1231297#1231297
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- class DarwinCore
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- module XmlReader
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- class << self
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- def from_xml(xml_io)
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- result = Nokogiri::XML(xml_io)
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- return { result.root.name.to_sym => xml_node_to_hash(result.root)}
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- end
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-
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- private
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-
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- def xml_node_to_hash(node)
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- # If we are at the root of the document, start the hash
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- if node.element?
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- result_hash = {}
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- if node.attributes != {}
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- result_hash[:attributes] = {}
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- node.attributes.keys.each do |key|
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- result_hash[:attributes][node.attributes[key].
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- name.to_sym] = prepare(node.attributes[key].value)
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- end
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- end
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- if node.children.size > 0
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- node.children.each do |child|
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- result = xml_node_to_hash(child)
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-
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- if child.name == "text"
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- unless child.next_sibling || child.previous_sibling
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- return prepare(result)
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- end
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- elsif result_hash[child.name.to_sym]
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- if result_hash[child.name.to_sym].is_a?(Object::Array)
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- result_hash[child.name.to_sym] << prepare(result)
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- else
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- result_hash[child.name.to_sym] =
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- [result_hash[child.name.to_sym]] << prepare(result)
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- end
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- else
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- result_hash[child.name.to_sym] = prepare(result)
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- end
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- end
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-
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- return result_hash
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- else
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- return result_hash
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- end
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- else
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- return prepare(node.content.to_s)
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- end
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- end
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-
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- def prepare(data)
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- return data if data.class != String
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- return true if data.strip == "true"
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- return false if data.strip == "false"
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- data.to_i.to_s == data ? data.to_i : data
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- end
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- end
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- end
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- end