drugbank 0.0.2 → 0.0.3

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 498584a7fea48511118bfef0220a5a11647ee5b3
+  data.tar.gz: 742693ef51557a848c104d5240329fa7ded6c6fd
+SHA512:
+  metadata.gz: 006c63468224ce33e695838208a83684aee7dc7bad71c91aef348feeea14de47fdda1e56a5041dfde500afd2efe378a84f275635053e13c5aae709a44ec104c9
+  data.tar.gz: a8da25d0bab2e77c4bec347b58375ab843f8182b982b77f5f946e7fc993982f79327875525a42fc8488933707a372eaca4836a9b2c5e3cc5360dcb4996942d47

data/lib/drugbank/drug_interaction.rb

@@ -4,8 +4,8 @@ module Drugbank
     include SaxStream::Mapper
 
     node 'drug-interaction'
-    map :interaction_drug_id, :to => 'drug'
+    map :interaction_drug_id, :to => 'drugbank-id'
     map :name,                :to => 'name'
     map :description,         :to => 'description'
   end
-end
+end

data/lib/drugbank/drugs.rb

@@ -4,7 +4,7 @@ require 'drugbank/drug'
 module Drugbank
   class Drugs < Drugbank::Base
     include SaxStream::Mapper
-    node 'drugs', :collect => false
+    node 'drugbank', :collect => false
 
     relate :drugs, :to => 'drug',  :as => [Drugbank::Drug]
   end

data/lib/drugbank/import.rb

@@ -32,7 +32,7 @@ module Drugbank
       collector.collect_batch
     end
 
-    private 
+    private
       def set_collector_block(block)
         collector.block = block
       end
@@ -63,11 +63,12 @@ module Drugbank
             zip_file.close()
           end
           #unzip the file first
-          Zip::ZipInputStream::open(file_name) do |io|    
+          Zip::ZipInputStream::open(file_name) do |io|
             while (entry = io.get_next_entry)
               if entry.name.split(/\./).last == 'xml'
                 unziped_file = Tempfile.new(Digest::MD5.hexdigest(entry.name))
                 add_file_for_cleanup(unziped_file)
+                unziped_file.binmode
                 unziped_file.write(io.read)
                 unziped_file.close()
                 return open(unziped_file.path)
@@ -79,4 +80,4 @@ module Drugbank
         end
     end
   end
-end
+end

data/lib/drugbank/version.rb

@@ -1,3 +1,3 @@
 module Drugbank
-  VERSION = "0.0.2"
+  VERSION = "0.0.3"
 end

metadata

@@ -1,20 +1,18 @@
 --- !ruby/object:Gem::Specification
 name: drugbank
 version: !ruby/object:Gem::Version
-  version: 0.0.2
-  prerelease: 
+  version: 0.0.3
 platform: ruby
 authors:
 - Eric Harrison
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-08-06 00:00:00.000000000 Z
+date: 2014-09-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: sax_stream
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - '='
       - !ruby/object:Gem::Version
@@ -22,7 +20,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - '='
       - !ruby/object:Gem::Version
@@ -30,7 +27,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: rubyzip
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - '='
       - !ruby/object:Gem::Version
@@ -38,7 +34,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - '='
       - !ruby/object:Gem::Version
@@ -82,26 +77,25 @@ files:
 homepage: http://github.com/smashtank/drugbank
 licenses:
 - MIT
+metadata: {}
 post_install_message: 
 rdoc_options: []
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - '>='
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
-  - - ! '>='
+  - - '>='
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.23
+rubygems_version: 2.2.2
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: Importer for Drugbank.ca
 test_files: []