drp 0.0.6
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- data/AUTHORS +6 -0
- data/CHANGES +0 -0
- data/INTRO +309 -0
- data/LICENSE +281 -0
- data/README +77 -0
- data/Rakefile +99 -0
- data/TODO +13 -0
- data/examples/intro/README +2 -0
- data/examples/intro/canvas_example.rb +123 -0
- data/examples/intro/max_depths_example.rb +34 -0
- data/examples/intro/max_depths_example_2.rb +30 -0
- data/examples/intro/odds_and_ends.rb +96 -0
- data/examples/intro/parameterization_example.rb +32 -0
- data/examples/intro/toy_example.rb +22 -0
- data/examples/intro/weight_fcd_example.rb +44 -0
- data/examples/intro/weights_example.rb +33 -0
- data/examples/intro/weights_example_2.rb +30 -0
- data/examples/symbolic_regression.rb +127 -0
- data/lib/defaults.rb +30 -0
- data/lib/drp.rb +30 -0
- data/lib/error.rb +69 -0
- data/lib/info.rb +30 -0
- data/lib/instance_methods.rb +154 -0
- data/lib/pso.rb +178 -0
- data/lib/rule_engine.rb +324 -0
- data/lib/utils.rb +67 -0
- data/lib/weights_and_max_depths.rb +264 -0
- data/test/tc_instance_methods.rb +219 -0
- data/test/tc_max_depths.rb +98 -0
- data/test/tc_utils.rb +60 -0
- data/test/tc_weights.rb +372 -0
- data/test/ts_drp.rb +28 -0
- metadata +80 -0
data/lib/utils.rb
ADDED
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=begin
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DRP, Genetic Programming + Grammatical Evolution = Directed Ruby Programming
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Copyright (C) 2006, Christophe McKeon
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This program is free software; you can redistribute it and/or
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modify it under the terms of the GNU General Public License
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as published by the Free Software Foundation; either version 2
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of the License, or (at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program; if not, write to the Free Softwar Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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=end
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module DRP
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module Utils
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class << self
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def map range, val, function = :linear
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# this line is necessary in case nil is explicitly passed
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function = function ? function.to_sym : :linear
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case function.to_sym
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when :linear, :lin
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linear_map range, val
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when :i_linear, :i_lin
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i_linear_map range, val
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else
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raise ArgumentError, "bad function for range: #{function}", caller
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end
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end
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private
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def linear_map range, val
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first, last = range.first, range.last
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diff = last - first
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diff * val + first
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end
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def i_linear_map range, val
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first, last = range.first, range.last
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distance = (last - first).to_i.abs + 1
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i = (distance * val).floor
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if first < last
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first + i
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else
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first - i
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end
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end
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end # class << self
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end # module Utils
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end # module DRP
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=begin
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DRP, Genetic Programming + Grammatical Evolution = Directed Ruby Programming
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Copyright (C) 2006, Christophe McKeon
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This program is free software; you can redistribute it and/or
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modify it under the terms of the GNU General Public License
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as published by the Free Software Foundation; either version 2
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10
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of the License, or (at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program; if not, write to the Free Softwar Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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=end
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module DRP
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module MaxDepths
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# the max_depth classes are stored in class variables
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# and are passed an instance of the extended user class
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# so that they can ask for codons if they need them.
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# they need not be copied like weights because they are
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# only run once at instance initialization
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class StaticMaxDepth
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def initialize int
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@value = int.to_i
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end
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def value drp_instance_unused
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@value
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end
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end
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class MappedMaxDepth
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def initialize range, function = :i_linear
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@range, @function = range, function
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end
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def value drp_instance
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Utils::map(
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@range,
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drp_instance.next_meta_codon,
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@function
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)
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end
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end
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class ProcMaxDepth
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def initialize proc
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@proc, @arity = proc, proc.arity
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end
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def value drp_instance
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if @arity <= 0
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@proc.call.to_i
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elsif @arity == 1
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@proc.call(drp_instance.next_meta_codon).to_i
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else
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@proc.call(*Array.new(@arity) { drp_instance.next_meta_codon }).to_i
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end
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end
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end
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end # module MaxDepths
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module Weights
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# user args can be array or proc
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WeightArgs = Struct.new :user_args, :rule_method, :drp_instance
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class AbstractWeight
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def self.factory args_or_proc
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proc do |rule_method, drp_instance|
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self.new WeightArgs.new(args_or_proc, rule_method, drp_instance)
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end
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81
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end
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end
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=begin
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weight 10.0 static weight
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weight 0..1 static mapped
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weight 0..1, :function static mapped w/ function
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weight {} static proc gets codons
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=end
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class StaticWeight < AbstractWeight
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attr_reader :value
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def initialize args
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user_args = args.user_args
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95
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sz = user_args.size
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case sz
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when 1
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arg = user_args[0]
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case arg
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when Numeric
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@value = arg.to_f
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when Range
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@value = Utils::map(
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arg,
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args.drp_instance.next_meta_codon
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)
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else
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raise ArgumentError, 'when 1 arg given to weight, must be Numeric, or Range', caller
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end
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when 2
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rng = args[0]
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112
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func = args[1].to_sym
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113
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if (rng.kind_of? Range) && (func.kind_of? Symbol)
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114
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@value = Utils::map(
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rng,
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args.drp_instance.next_meta_codon,
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func
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)
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else
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raise ArgumentError, 'weight args of wrong types'
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end
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else
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raise ArgumentError, "weight takes 1 or 2 args, #{sz} given"
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124
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end # case user_args.size
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125
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end # def initialize
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126
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end
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127
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|
128
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class ProcStaticWeight < StaticWeight
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def initialize args
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proc = args.user_args
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ar = proc.arity
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inst = args.drp_instance
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if ar <= 0
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@value = proc.call
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elsif ar == 1
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@value = proc.call inst.next_meta_codon
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else
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@value = proc.call *Array.new(ar) { inst.next_meta_codon }
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139
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end
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end
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end
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|
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=begin
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weight_dyn 0..1 codon maps to range for every rule method choice
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weight_dyn 0..1, :function same but using function
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weight_dyn 0..1, 0..1 initial min and max determined by metacodons
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and further runtime mapping also
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weight_dyn 0..1, 0..1, :function same but function used for runtime mapping
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weight_dyn { |codon| } same but using use block, gets meta_codons
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=end
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152
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=begin DYNAMIC WEIGHTS PROBABLY NOT THAT USEFUL
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154
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class DynamicWeight < AbstractWeight
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def initialize args
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@drp_instance = args.drp_instance
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arg1, arg2, arg3 = args.user_args
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158
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if arg1.kind_of? Range
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159
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@range = arg1
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160
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if arg2.kind_of? Range
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161
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if (arg3.kind_of? Symbol) or (arg3.kind_of? String)
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@function = arg3
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end
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164
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min = Utils::map(@range, @drp_instance.next_meta_codon)
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max = Utils::map(arg2, @drp_instance.next_meta_codon)
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@range = min..max
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167
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elsif (arg2.kind_of? Symbol) or (arg2.kind_of? String)
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168
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@function = arg2
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169
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end
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170
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else
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171
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raise ArgumentError, 'weight_dyn args of wrong type'
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172
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end
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173
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end
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174
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def value
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175
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val = Utils::map(
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@range,
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@drp_instance.next_meta_codon,
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@function
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)
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puts val
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val
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182
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end
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183
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end
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184
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|
185
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class ProcDynamicWeight < AbstractWeight
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186
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def initialize args
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187
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@proc = args.user_args
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@arity = @proc.arity
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189
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@drp_instance = args.drp_instance
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190
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end
|
191
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def value
|
192
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case @arity
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# these are here, and also ordered, for efficiencies sake
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194
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when 1
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@proc.call @drp_instance.next_meta_codon
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196
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when 2
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197
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@proc.call @drp_instance.next_meta_codon, @drp_instance.next_meta_codon
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198
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when 0
|
199
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raise ArgumentError, "block given to dynamic weight must have 1 or more arguments"
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200
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else
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@proc.call *Array.new(@arity) { @drp_instance.next_meta_codon }
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202
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end
|
203
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end
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204
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end
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205
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|
206
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=end
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208
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=begin
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209
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weight_fcd 0..1 dynamic from current depth (uses max_depth)
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210
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weight_fcd 0..1, :function dynamic fcd w/ function
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211
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weight_fcd 0..1, 0..1 dynamic like previous but start
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212
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and end of range mapped from codons
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213
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weight_fcd 0..1, 0..1, :function like previous with function
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214
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the function applies to the dynamic mapping
|
215
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of the current depth, and not the static
|
216
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mapping via codons of start and end
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217
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which is always just linear
|
218
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weight_fcd { |max_depth| dynamic, expects a block which takes the
|
219
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... max_depth and returns a proc which
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220
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proc {|depth| ... } which takes the current depth
|
221
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}
|
222
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+
=end
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223
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+
|
224
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class WeightFromCurrentDepth < AbstractWeight
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225
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def initialize args
|
226
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@drp_instance = args.drp_instance
|
227
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@rule_method = args.rule_method
|
228
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+
@max_depth = @rule_method.max_depth - 1
|
229
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+
arg1, arg2, arg3 = args.user_args
|
230
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+
if arg1.kind_of? Range
|
231
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@range = arg1
|
232
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+
if arg2.kind_of? Range
|
233
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+
if (arg3.kind_of? Symbol) or (arg3.kind_of? String)
|
234
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@function = arg3
|
235
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+
end
|
236
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min = Utils::map(@range, @drp_instance.next_meta_codon)
|
237
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max = Utils::map(arg2, @drp_instance.next_meta_codon)
|
238
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+
@range = min..max
|
239
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+
elsif (arg2.kind_of? Symbol) or (arg2.kind_of? String)
|
240
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+
@function = arg2
|
241
|
+
end
|
242
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+
else
|
243
|
+
raise ArgumentError, 'bad argument to weight_fcd'
|
244
|
+
end
|
245
|
+
end
|
246
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+
def value
|
247
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+
val = @rule_method.depth.to_f / @max_depth
|
248
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+
Utils::map(@range, val, @function)
|
249
|
+
end
|
250
|
+
end
|
251
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+
|
252
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+
class ProcWeightFromCurrentDepth < AbstractWeight
|
253
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def initialize args
|
254
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+
@rule_method = args.rule_method
|
255
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+
@proc = args.user_args.call @rule_method.max_depth
|
256
|
+
end
|
257
|
+
def value
|
258
|
+
@proc.call @rule_method.depth
|
259
|
+
end
|
260
|
+
end
|
261
|
+
|
262
|
+
end # module Weights
|
263
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+
|
264
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+
end # module DRP
|
@@ -0,0 +1,219 @@
|
|
1
|
+
|
2
|
+
=begin
|
3
|
+
|
4
|
+
DRP, Genetic Programming + Grammatical Evolution = Directed Ruby Programming
|
5
|
+
Copyright (C) 2006, Christophe McKeon
|
6
|
+
|
7
|
+
This program is free software; you can redistribute it and/or
|
8
|
+
modify it under the terms of the GNU General Public License
|
9
|
+
as published by the Free Software Foundation; either version 2
|
10
|
+
of the License, or (at your option) any later version.
|
11
|
+
|
12
|
+
This program is distributed in the hope that it will be useful,
|
13
|
+
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
14
|
+
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
15
|
+
GNU General Public License for more details.
|
16
|
+
|
17
|
+
You should have received a copy of the GNU General Public License
|
18
|
+
along with this program; if not, write to the Free Softwar Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
|
19
|
+
|
20
|
+
=end
|
21
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+
|
22
|
+
class TestInstanceMethodsHelper
|
23
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+
|
24
|
+
extend DRP::RuleEngine
|
25
|
+
|
26
|
+
MAX_DEPTH = 10
|
27
|
+
MAX_DEPTH_2 = 3
|
28
|
+
DEFAULT_NUM_CODONS = 40
|
29
|
+
|
30
|
+
attr_reader :minimum_depth, :maximum_depth, :depths
|
31
|
+
|
32
|
+
def initialize codons = nil
|
33
|
+
@minimum_depth = 2000000000
|
34
|
+
@maximum_depth = 0
|
35
|
+
@depths = []
|
36
|
+
self.codons= codons
|
37
|
+
# init_drp
|
38
|
+
end
|
39
|
+
|
40
|
+
def next_codon
|
41
|
+
@codon_index = 0 if @codon_index == @num_codons
|
42
|
+
res = @codons[@codon_index]
|
43
|
+
@codon_index += 1
|
44
|
+
res
|
45
|
+
end
|
46
|
+
|
47
|
+
def codons= codons
|
48
|
+
@codons = codons || Array.new(DEFAULT_NUM_CODONS) { rand }
|
49
|
+
@codon_index = 0
|
50
|
+
@num_codons = @codons.size
|
51
|
+
end
|
52
|
+
|
53
|
+
begin_rules
|
54
|
+
|
55
|
+
### depth tests ###
|
56
|
+
|
57
|
+
# because there is only ever one LHS
|
58
|
+
# in the follwing rules, each one is always
|
59
|
+
# picked and hence is deterministic and
|
60
|
+
# recursed to the maximum depth.
|
61
|
+
|
62
|
+
max_depth MAX_DEPTH
|
63
|
+
|
64
|
+
def test_depth_pre
|
65
|
+
register_depth
|
66
|
+
test_depth_pre
|
67
|
+
end
|
68
|
+
|
69
|
+
def test_depth_post
|
70
|
+
test_depth_post
|
71
|
+
register_depth
|
72
|
+
end
|
73
|
+
|
74
|
+
def test_depth_2_rules
|
75
|
+
@depths << depth
|
76
|
+
other_rule
|
77
|
+
test_depth_2_rules
|
78
|
+
end
|
79
|
+
|
80
|
+
max_depth MAX_DEPTH_2
|
81
|
+
|
82
|
+
def other_rule
|
83
|
+
@depths << depth
|
84
|
+
other_rule
|
85
|
+
end
|
86
|
+
|
87
|
+
end_rules
|
88
|
+
|
89
|
+
def register_depth
|
90
|
+
the_depth = depth
|
91
|
+
@depths << the_depth
|
92
|
+
# print @depths, "\n"
|
93
|
+
@minimum_depth = the_depth if the_depth < @minimum_depth
|
94
|
+
@maximum_depth = the_depth if the_depth > @maximum_depth
|
95
|
+
end
|
96
|
+
|
97
|
+
end
|
98
|
+
|
99
|
+
class TestInstanceMethods < Test::Unit::TestCase
|
100
|
+
|
101
|
+
MD = TestInstanceMethodsHelper::MAX_DEPTH
|
102
|
+
MD2 = TestInstanceMethodsHelper::MAX_DEPTH_2
|
103
|
+
|
104
|
+
def setup
|
105
|
+
@drp_obj = TestInstanceMethodsHelper.new
|
106
|
+
end
|
107
|
+
|
108
|
+
def test_depth_pre
|
109
|
+
@drp_obj.test_depth_pre
|
110
|
+
assert_equal 1, @drp_obj.minimum_depth
|
111
|
+
assert_equal MD, @drp_obj.maximum_depth
|
112
|
+
assert_equal (1..MD).to_a, @drp_obj.depths
|
113
|
+
# assert false, "NOTE: just to have a false assertion for gemspec"
|
114
|
+
end
|
115
|
+
|
116
|
+
def test_depth_post
|
117
|
+
@drp_obj.test_depth_post
|
118
|
+
assert_equal 1, @drp_obj.minimum_depth
|
119
|
+
assert_equal MD, @drp_obj.maximum_depth
|
120
|
+
assert_equal (1..MD).to_a.reverse, @drp_obj.depths
|
121
|
+
end
|
122
|
+
|
123
|
+
def test_depth_2_rules
|
124
|
+
@drp_obj.test_depth_2_rules
|
125
|
+
depths_should_be = []
|
126
|
+
MD.times do |i|
|
127
|
+
depths_should_be << (i + 1)
|
128
|
+
MD2.times do |j|
|
129
|
+
depths_should_be << (j + 1)
|
130
|
+
end
|
131
|
+
end
|
132
|
+
assert_equal depths_should_be, @drp_obj.depths
|
133
|
+
end
|
134
|
+
|
135
|
+
def test_map_range
|
136
|
+
|
137
|
+
# NOTE the following effectively tests Utils::RangeFunctions as well
|
138
|
+
|
139
|
+
assert_kind_of Float, @drp_obj.map(0..1)
|
140
|
+
assert_kind_of Float, @drp_obj.map(0.0..1.0)
|
141
|
+
|
142
|
+
single_codon 0.0
|
143
|
+
|
144
|
+
# linear function tests
|
145
|
+
r = @drp_obj.map 0..1
|
146
|
+
assert_equal r, 0.0
|
147
|
+
|
148
|
+
r = @drp_obj.map 1..0
|
149
|
+
assert_equal r, 1.0
|
150
|
+
r = @drp_obj.map -12.3..12.3
|
151
|
+
assert_equal r, -12.3
|
152
|
+
r = @drp_obj.map 12.3..-12.3
|
153
|
+
assert_equal r, 12.3
|
154
|
+
|
155
|
+
single_codon 0.5
|
156
|
+
|
157
|
+
# linear function tests
|
158
|
+
r = @drp_obj.map 0..1
|
159
|
+
assert_equal r, 0.5
|
160
|
+
r = @drp_obj.map 1..0
|
161
|
+
assert_equal r, 0.5
|
162
|
+
r = @drp_obj.map -12.3..12.3
|
163
|
+
assert_equal r, 0
|
164
|
+
r = @drp_obj.map 12.3..-12.3
|
165
|
+
assert_equal r, 0
|
166
|
+
|
167
|
+
single_codon 1.0
|
168
|
+
|
169
|
+
# linear function tests
|
170
|
+
r = @drp_obj.map 0..1
|
171
|
+
assert_equal r, 1.0
|
172
|
+
r = @drp_obj.map 1..0
|
173
|
+
assert_equal r, 0.0
|
174
|
+
r = @drp_obj.map -12.3..12.3
|
175
|
+
assert_equal r, 12.3
|
176
|
+
r = @drp_obj.map 12.3..-12.3
|
177
|
+
assert_equal r, -12.3
|
178
|
+
|
179
|
+
end
|
180
|
+
|
181
|
+
def test_map_block
|
182
|
+
|
183
|
+
num_codons = 10
|
184
|
+
codons = Array.new(num_codons) { rand }
|
185
|
+
set_codons codons
|
186
|
+
|
187
|
+
# assert_nil(codons.detect { |c| c >= 1.0 || c < 0.0 })
|
188
|
+
identity = proc { |x| x }
|
189
|
+
no_params = proc {}
|
190
|
+
local = codons.collect &identity
|
191
|
+
mapped = []
|
192
|
+
|
193
|
+
num_codons.times do
|
194
|
+
mapped << @drp_obj.map(&identity)
|
195
|
+
end
|
196
|
+
|
197
|
+
assert_equal local, mapped
|
198
|
+
|
199
|
+
# test multiple params
|
200
|
+
set_codons [1,2,3]
|
201
|
+
r = @drp_obj.map { |a,b,c,d| [a,b,c,d] }
|
202
|
+
assert_equal [1,2,3,1], r
|
203
|
+
|
204
|
+
assert_raise(ArgumentError) { @drp_obj.map &no_params }
|
205
|
+
|
206
|
+
# should not accept args and block
|
207
|
+
assert_raise(ArgumentError) { @drp_obj.map 0..1, &identity }
|
208
|
+
assert_raise(ArgumentError) { @drp_obj.map 0..1, :linear, &identity }
|
209
|
+
|
210
|
+
end
|
211
|
+
|
212
|
+
def single_codon codon
|
213
|
+
@drp_obj.codons = [codon]
|
214
|
+
end
|
215
|
+
def set_codons codons
|
216
|
+
@drp_obj.codons = codons
|
217
|
+
end
|
218
|
+
|
219
|
+
end
|