dotlayer 0.3.1 → 0.3.2

checksums.yaml

@@ -1,7 +1,7 @@
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data/CHANGELOG.md

@@ -2,6 +2,16 @@
 
 All notable changes to dotlayer. Versions follow [Semantic Versioning](https://semver.org/).
 
+## 0.3.2 — 2026-11-05
+
+### Added
+
+- `doctor` reports managed files that are no longer links. Tools that save by
+  writing a temp file and renaming it, or with `sed -i`, replace a stowed link
+  with a plain file, and changes in the repo stop reaching the machine. Before,
+  only `install` noticed, by failing with conflicts. The check asks Stow in
+  simulate mode, so it follows Stow's own ignore rules.
+
 ## 0.3.1 — 2026-11-05
 
 First RubyGems release since 0.2.2: it includes everything listed under 0.3.0,

data/README.md

@@ -289,7 +289,7 @@ Exit status: `0` when nothing would change, `1` when changes are pending (so it
 
 ### doctor
 
-Checks that stow is installed, repos and packages exist, and that managed config paths have no broken symlinks. It also scans the whole target dir (default `~`) for symlinks that point into a configured repo but whose target no longer exists. The scan skips `.cache`, `node_modules`, `.git`, `.local/share/Steam` and the repos themselves. It also skips other git checkouts (any directory with a `.git`, like `~/src/*`), unless a package ships files into that path, since stow only links there in that case. It never follows directory symlinks, and stops at `--depth` levels (default 6). It only reports: each dangling link is listed with its target, followed by a suggested `rm` command.
+Checks that stow is installed, repos and packages exist, that managed config paths have no broken symlinks, and that every managed file is still a link: an app that saves by replacing the file leaves a plain file there, which `install` would refuse to overwrite. It also scans the whole target dir (default `~`) for symlinks that point into a configured repo but whose target no longer exists. The scan skips `.cache`, `node_modules`, `.git`, `.local/share/Steam` and the repos themselves. It also skips other git checkouts (any directory with a `.git`, like `~/src/*`), unless a package ships files into that path, since stow only links there in that case. It never follows directory symlinks, and stops at `--depth` levels (default 6). It only reports: each dangling link is listed with its target, followed by a suggested `rm` command.
 
 Exit status: `0` when no issues are found, `1` otherwise.
 

data/lib/dotlayer/commands/doctor.rb

@@ -30,6 +30,7 @@ module Dotlayer
         check_repos_exist
         check_packages_exist(@packages)
         check_broken_symlinks
+        check_unlinked_files
         check_dangling_repo_links
 
         puts
@@ -47,7 +48,7 @@ module Dotlayer
 
       def check_stow_installed
         print "  Checking stow... "
-        if system("which", "stow", out: File::NULL, err: File::NULL)
+        if (@stow_installed = system("which", "stow", out: File::NULL, err: File::NULL))
           ok "installed"
         else
           error "missing"
@@ -95,6 +96,35 @@ module Dotlayer
         end
       end
 
+      # Tools that save by writing a temp file and renaming it (or `sed -i`)
+      # replace a stowed link with a plain file, and the repo stops reaching
+      # the machine. Stow's simulate mode reports those as conflicts, so ask
+      # it instead of re-implementing its ignore rules.
+      def check_unlinked_files
+        return unless @stow_installed
+
+        print "  Checking that managed files are still links... "
+        stow = Stow.new(target: @config.target, dry_run: true, quiet: true)
+        conflicts = @packages.flat_map { |repo_path, package|
+          next [] if !Dir.exist?(File.join(repo_path, package)) || stow.restow(repo_path, package)
+
+          conflicts = stow.last_output.to_s.each_line(chomp: true).filter_map { |line| Diff::CONFLICT_LINE.match(line)&.[](1) }
+          conflicts = [stow.last_error] if conflicts.empty?
+          conflicts.map { |conflict| [repo_path, package, conflict] }
+        }
+
+        if conflicts.empty?
+          ok "yes"
+          return
+        end
+
+        warning "#{conflicts.size} not linked"
+        conflicts.each do |repo_path, package, conflict|
+          @issues << "#{File.basename(repo_path)}/#{package}: #{conflict}"
+        end
+        @hints << "Compare each file with its repo copy (dotlayer diff lists them), keep what you need, delete the plain file, then run dotlayer install."
+      end
+
       # Report-only scan of the whole target dir for links into a configured
       # repo whose destination no longer exists. Never follows directory
       # symlinks and never deletes anything.

data/lib/dotlayer.rb

@@ -1,5 +1,5 @@
 module Dotlayer
-  VERSION = "0.3.1"
+  VERSION = "0.3.2"
 
   autoload :CLI, "dotlayer/cli"
   autoload :Config, "dotlayer/config"

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: dotlayer
 version: !ruby/object:Gem::Version
-  version: 0.3.1
+  version: 0.3.2
 platform: ruby
 authors:
 - Douglas Andrade