dna_hamming 0.1.0

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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.2.3
+before_install: gem install bundler -v 1.10.6

data/CODE_OF_CONDUCT.md

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+# Contributor Code of Conduct
+
+For you, brethren, have been called to liberty; only do not use liberty as an opportunity for the flesh, but through love serve one another. For all the law is fulfilled in one word, even in this: “You shall love your neighbor as yourself.” But if you bite and devour one another, beware lest you be consumed by one another! - [Galatians 5:13-15](https://www.biblegateway.com/passage/?search=Gal.5.13-Gal.5.15&version=NKJV)

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in dna_hamming.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2015 Daniel P. Clark
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# DnaHamming
+
+My solution to computing DNA Hamming.
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
+

data/Rakefile

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+require "bundler/gem_tasks"
+require "rake/testtask"
+
+Rake::TestTask.new(:test) do |t|
+  t.libs << "test"
+  t.libs << "lib"
+  t.test_files = FileList['test/**/*_test.rb']
+end
+
+task :default => :test

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "dna_hamming"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

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+#!/bin/bash
+set -euo pipefail
+IFS=$'\n\t'
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/dna_hamming.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'dna_hamming/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "dna_hamming"
+  spec.version       = DNAHamming::VERSION
+  spec.authors       = ["Daniel P. Clark"]
+  spec.email         = ["6ftdan@gmail.com"]
+
+  spec.summary       = %q{My solution to the DNA Hamming computation.}
+  spec.description   = %q{DNA Hamming.  Compute the difference between two DNA strands as represented by strings.}
+  spec.homepage      = "http://github.com/danielpclark/dna_hamming"
+  spec.license       = "MIT"
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.10"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "minitest", "~> 5.8"
+end

data/lib/dna_hamming.rb

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+require "dna_hamming/version"
+require "dna_hamming/hamming"
+require "dna_hamming/pair"
+
+module DNAHamming
+  ::DNAPair = ->a,b{Pair.new(a, b)}
+end

data/lib/dna_hamming/hamming.rb

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+module Hamming
+  def self.compute(pair)
+    set_strand_position_by_length(pair) unless pair.same?
+    count_the_distance(pair)
+  end
+
+  private
+  def self.count_the_distance(pair)
+    pair.entries.map(&:chars).inject(:zip).select{|a,b| a!=b}.count
+  end
+
+  def self.set_strand_position_by_length(pair)
+    pair.swap! if pair.inject{|a,b|a.length>b.length}
+  end
+end
+

data/lib/dna_hamming/pair.rb

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+module DNAHamming
+  class Pair < Struct.new(:first, :second)
+    def same?
+      inject(:eql?)
+    end
+
+    def swap!
+      members.zip(entries.reverse) {|a,b| self[a] = b}
+    end
+  end
+end
+

data/lib/dna_hamming/version.rb

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+module DNAHamming
+  VERSION = "0.1.0"
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: dna_hamming
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Daniel P. Clark
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2015-12-11 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: minitest
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '5.8'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '5.8'
+description: DNA Hamming.  Compute the difference between two DNA strands as represented
+  by strings.
+email:
+- 6ftdan@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".travis.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- dna_hamming.gemspec
+- lib/dna_hamming.rb
+- lib/dna_hamming/hamming.rb
+- lib/dna_hamming/pair.rb
+- lib/dna_hamming/version.rb
+homepage: http://github.com/danielpclark/dna_hamming
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.5.0
+signing_key: 
+specification_version: 4
+summary: My solution to the DNA Hamming computation.
+test_files: []