dna 0.0.8 → 0.0.9
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- data/lib/dna.rb +2 -0
- data/spec/data/empty.txt +0 -0
- data/spec/dna_spec.rb +8 -3
- data/spec/spec_helper.rb +2 -0
- metadata +4 -3
data/lib/dna.rb
CHANGED
data/spec/data/empty.txt
ADDED
File without changes
|
data/spec/dna_spec.rb
CHANGED
@@ -6,17 +6,22 @@ describe Dna do
|
|
6
6
|
let(:fasta) { Dna.new(@fasta_file) }
|
7
7
|
let(:fastq) { Dna.new @fastq_file }
|
8
8
|
let(:qseq) { Dna.new @qseq_file }
|
9
|
+
let(:empty) { Dna.new @empty_file }
|
10
|
+
|
11
|
+
it 'doesnt freak out on empty files' do
|
12
|
+
fasta.format == :empty
|
13
|
+
end
|
9
14
|
|
10
15
|
it 'can auto-detect fasta format' do
|
11
|
-
fasta.format ==
|
16
|
+
fasta.format.should == :fasta
|
12
17
|
end
|
13
18
|
|
14
19
|
it 'can auto-detect fastq format' do
|
15
|
-
fastq.format ==
|
20
|
+
fastq.format.should == :fastq
|
16
21
|
end
|
17
22
|
|
18
23
|
it 'can auto-detect qseq format' do
|
19
|
-
qseq.format ==
|
24
|
+
qseq.format.should == :qseq
|
20
25
|
end
|
21
26
|
|
22
27
|
it 'can properly parse a crappily formatted fasta file' do
|
data/spec/spec_helper.rb
CHANGED
@@ -7,11 +7,13 @@ path = File.dirname(__FILE__)
|
|
7
7
|
fasta_file = File.readlines(File.join(path, 'data/test.fasta'))
|
8
8
|
fastq_file = File.readlines(File.join(path, 'data/test.fastq'))
|
9
9
|
qseq_file = File.readlines(File.join(path, 'data/test.qseq'))
|
10
|
+
empty_file = File.readlines(File.join(path, 'data/empty.txt'))
|
10
11
|
|
11
12
|
shared_context "parser stuff" do
|
12
13
|
before do
|
13
14
|
@fasta_file = fasta_file
|
14
15
|
@fastq_file = fastq_file
|
15
16
|
@qseq_file = qseq_file
|
17
|
+
@empty_fiel = empty_file
|
16
18
|
end
|
17
19
|
end
|
metadata
CHANGED
@@ -1,13 +1,13 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: dna
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
4
|
+
hash: 13
|
5
5
|
prerelease:
|
6
6
|
segments:
|
7
7
|
- 0
|
8
8
|
- 0
|
9
|
-
-
|
10
|
-
version: 0.0.
|
9
|
+
- 9
|
10
|
+
version: 0.0.9
|
11
11
|
platform: ruby
|
12
12
|
authors:
|
13
13
|
- Austin G. Davis-Richardson
|
@@ -34,6 +34,7 @@ files:
|
|
34
34
|
- spec/dna_spec.rb
|
35
35
|
- spec/record_spec.rb
|
36
36
|
- spec/spec_helper.rb
|
37
|
+
- spec/data/empty.txt
|
37
38
|
- spec/data/test.fasta
|
38
39
|
- spec/data/test.fastq
|
39
40
|
- spec/data/test.qseq
|