dna 0.0.8 → 0.0.9

data/lib/dna.rb

@@ -28,6 +28,8 @@ class Dna
     first_line = @handle.first
     @handle.rewind if @handle.class == File
 
+    return :unknown if first_line == nil
+
     # detect qseq by counting number of tabs.
     if first_line.split("\t").length == 11
       return :qseq

data/spec/dna_spec.rb

@@ -6,17 +6,22 @@ describe Dna do
   let(:fasta) { Dna.new(@fasta_file) }
   let(:fastq) { Dna.new @fastq_file }
   let(:qseq) { Dna.new @qseq_file }
+  let(:empty) { Dna.new @empty_file }
+
+  it 'doesnt freak out on empty files' do
+    fasta.format == :empty
+  end
 
   it 'can auto-detect fasta format' do
-    fasta.format == 'fasta'
+    fasta.format.should == :fasta
   end
 
   it 'can auto-detect fastq format' do
-    fastq.format == 'fastq'
+    fastq.format.should == :fastq
   end
 
   it 'can auto-detect qseq format' do
-    qseq.format == 'qseq'
+    qseq.format.should == :qseq
   end
 
   it 'can properly parse a crappily formatted fasta file' do

data/spec/spec_helper.rb

@@ -7,11 +7,13 @@ path = File.dirname(__FILE__)
 fasta_file = File.readlines(File.join(path, 'data/test.fasta'))
 fastq_file = File.readlines(File.join(path, 'data/test.fastq'))
 qseq_file = File.readlines(File.join(path, 'data/test.qseq'))
+empty_file = File.readlines(File.join(path, 'data/empty.txt'))
 
 shared_context "parser stuff" do
   before do
     @fasta_file = fasta_file
     @fastq_file = fastq_file
     @qseq_file = qseq_file
+    @empty_fiel = empty_file
   end
 end

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: dna
 version: !ruby/object:Gem::Version 
-  hash: 15
+  hash: 13
   prerelease: 
   segments: 
   - 0
   - 0
-  - 8
-  version: 0.0.8
+  - 9
+  version: 0.0.9
 platform: ruby
 authors: 
 - Austin G. Davis-Richardson
@@ -34,6 +34,7 @@ files:
 - spec/dna_spec.rb
 - spec/record_spec.rb
 - spec/spec_helper.rb
+- spec/data/empty.txt
 - spec/data/test.fasta
 - spec/data/test.fastq
 - spec/data/test.qseq