divvy_proteomics 0.3.0 → 0.3.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/divvy_spectra +0 -2
- data/divvy_proteomics.gemspec +2 -2
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 7f93a23f31f2dec026e11f2014700b5baf3385ef
|
|
4
|
+
data.tar.gz: b23f1ebad985b2622ecd265edc4913da10cb4134
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: dce7c826d2a0e956d711721f9315dc59f890a9a5334c934534ca9d3f9aade3ae701e8ace19824859d90528b5fa40e0eb9fea1a57c70a731fe675c0d0f83470b8
|
|
7
|
+
data.tar.gz: e39bcf3f1a0af90d0cf355c1556cb3e178e19b9f1a33408c7a4443cf1071236883eb93e832d431a9d0e0bbba337270518f5ef5df9a873c5d8d3d7cc2f0b7d580
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.3.
|
|
1
|
+
0.3.1
|
data/bin/divvy_spectra
CHANGED
|
@@ -175,8 +175,6 @@ log.info "Found #{total_contaminating_spectra} contaminating spectral counts"
|
|
|
175
175
|
total_spectra = hits.collect{|ident, pep| pep.redundancy}.reduce(:+) - total_contaminating_spectra
|
|
176
176
|
log.info "Parsed in #{proteins.length} proteins and #{hits.length} peptides, and #{total_spectra.to_i} non-contaminating spectra"
|
|
177
177
|
|
|
178
|
-
log.debug "Proteins parsed: #{proteins.inspect}"
|
|
179
|
-
|
|
180
178
|
all_peptides = hits.values.uniq
|
|
181
179
|
number_shared_peptides = all_peptides.select{|pep| pep.parent_proteins.length > 1}.length
|
|
182
180
|
number_non_shared_peptides = all_peptides.select{|pep| pep.parent_proteins.length == 1}.length
|
data/divvy_proteomics.gemspec
CHANGED
|
@@ -2,11 +2,11 @@
|
|
|
2
2
|
# DO NOT EDIT THIS FILE DIRECTLY
|
|
3
3
|
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
|
|
4
4
|
# -*- encoding: utf-8 -*-
|
|
5
|
-
# stub: divvy_proteomics 0.3.
|
|
5
|
+
# stub: divvy_proteomics 0.3.1 ruby lib
|
|
6
6
|
|
|
7
7
|
Gem::Specification.new do |s|
|
|
8
8
|
s.name = "divvy_proteomics"
|
|
9
|
-
s.version = "0.3.
|
|
9
|
+
s.version = "0.3.1"
|
|
10
10
|
|
|
11
11
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
12
12
|
s.require_paths = ["lib"]
|