diverge 1.1.0 → 1.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/README.md +14 -12
- data/lib/diverge.rb +23 -3
- metadata +9 -14
checksums.yaml
ADDED
@@ -0,0 +1,7 @@
|
|
1
|
+
---
|
2
|
+
SHA1:
|
3
|
+
metadata.gz: 91446f47cea184ffd150c7ea2c8970be6d44a1fa
|
4
|
+
data.tar.gz: 9532bd8926e032f158c2d9edb8c718af5db32825
|
5
|
+
SHA512:
|
6
|
+
metadata.gz: d7843f4c6121463c566d5728ce85daad3bc927b66917f93d31614c7320420a682e0c7485102465a13a4c33cf3ca867d6b359ed5fecae8508d5eb43fe3f094885
|
7
|
+
data.tar.gz: e43438b427a8282098ee472fd9e80e2acc2078392179b3ca1c744dfad8249a32eca8b250b7d21310958d021afac33a367a21546f749a66c3ab987df9b18a8097
|
data/README.md
CHANGED
@@ -2,18 +2,20 @@
|
|
2
2
|
|
3
3
|
Diverge is a very simple class for calculating the Kullback–Leibler divergence or Jensen–Shannon divergence of two datasets. Example usage is as follows:
|
4
4
|
|
5
|
-
|
6
|
-
|
7
|
-
|
8
|
-
|
9
|
-
|
10
|
-
|
11
|
-
|
12
|
-
|
13
|
-
|
14
|
-
|
15
|
-
|
16
|
-
|
5
|
+
1.9.3p194 :001 > require "diverge"
|
6
|
+
=> true
|
7
|
+
1.9.3p194 :002 > Diverge.new([0.25, 0.5, 0.25], [0.5, 0.3, 0.2]).kl # Kullback-Leibler
|
8
|
+
=> 0.1379119045715615
|
9
|
+
1.9.3p194 :003 > Diverge.new([0.25, 0.5, 0.25], [0.5, 0.3, 0.2]).kl(:reverse)
|
10
|
+
=> 0.14869719288733346
|
11
|
+
1.9.3p194 :004 > Diverge.new([0.5, 0.3, 0.2], [0.25, 0.5, 0.25]).kl
|
12
|
+
=> 0.14869719288733346
|
13
|
+
1.9.3p194 :005 > Diverge.new([0.25, 0.5, 0.25], [0.5, 0.3, 0.2]).js # Jensen-Shannon
|
14
|
+
=> 0.14330454872944748
|
15
|
+
1.9.3p194 :006 > Diverge.new([0.5, 0.3, 0.2], [0.25, 0.5, 0.25]).js
|
16
|
+
=> 0.14330454872944748
|
17
|
+
1.9.3p194 :006 > Diverge.new([0.5, 0.3, 0.2], [0.25, 0.5, 0.25]).corr # Pearson correlation
|
18
|
+
=> -0.18898223650461368
|
17
19
|
|
18
20
|
http://rubygems.org/gems/diverge
|
19
21
|
|
data/lib/diverge.rb
CHANGED
@@ -1,21 +1,27 @@
|
|
1
1
|
require "gsl"
|
2
2
|
|
3
3
|
class Diverge
|
4
|
+
class << self
|
5
|
+
attr_accessor :debug
|
6
|
+
end
|
7
|
+
|
8
|
+
@debug = true
|
9
|
+
|
4
10
|
attr_reader :p, :q
|
5
11
|
|
6
12
|
def initialize(p, q)
|
7
13
|
@p, @q = p, q
|
8
14
|
|
9
15
|
unless p.length == q.length
|
10
|
-
|
16
|
+
debugger { "The two discrete distributions must have the same number of elements" }
|
11
17
|
end
|
12
18
|
|
13
19
|
unless (p_sum = p.inject(&:+)) == 1
|
14
|
-
|
20
|
+
debugger { "Warning: the first argument does not sum to 1, the sum is #{p_sum.inspect}" }
|
15
21
|
end
|
16
22
|
|
17
23
|
unless (q_sum = q.inject(&:+)) == 1
|
18
|
-
|
24
|
+
debugger { "Warning: the second argument does not sum to 1, the sum is #{q_sum.inspect}" }
|
19
25
|
end
|
20
26
|
end
|
21
27
|
|
@@ -48,4 +54,18 @@ class Diverge
|
|
48
54
|
end
|
49
55
|
|
50
56
|
alias :corr :correlation
|
57
|
+
|
58
|
+
def debug
|
59
|
+
self.class.debug
|
60
|
+
end
|
61
|
+
|
62
|
+
def debug=(value)
|
63
|
+
self.class.debug = value
|
64
|
+
end
|
65
|
+
|
66
|
+
private
|
67
|
+
|
68
|
+
def debugger
|
69
|
+
STDERR.puts yield if debug
|
70
|
+
end
|
51
71
|
end
|
metadata
CHANGED
@@ -1,30 +1,27 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: diverge
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.1.
|
5
|
-
prerelease:
|
4
|
+
version: 1.1.1
|
6
5
|
platform: ruby
|
7
6
|
authors:
|
8
7
|
- Evan Senter
|
9
8
|
autorequire:
|
10
9
|
bindir: bin
|
11
10
|
cert_chain: []
|
12
|
-
date:
|
11
|
+
date: 2013-04-29 00:00:00.000000000 Z
|
13
12
|
dependencies:
|
14
13
|
- !ruby/object:Gem::Dependency
|
15
14
|
name: gsl
|
16
15
|
requirement: !ruby/object:Gem::Requirement
|
17
|
-
none: false
|
18
16
|
requirements:
|
19
|
-
- -
|
17
|
+
- - '>='
|
20
18
|
- !ruby/object:Gem::Version
|
21
19
|
version: 1.14.0
|
22
20
|
type: :runtime
|
23
21
|
prerelease: false
|
24
22
|
version_requirements: !ruby/object:Gem::Requirement
|
25
|
-
none: false
|
26
23
|
requirements:
|
27
|
-
- -
|
24
|
+
- - '>='
|
28
25
|
- !ruby/object:Gem::Version
|
29
26
|
version: 1.14.0
|
30
27
|
description: A simple collection of functions for determining the divergence between
|
@@ -39,27 +36,25 @@ files:
|
|
39
36
|
- README.md
|
40
37
|
homepage: http://rubygems.org/gems/diverge
|
41
38
|
licenses: []
|
39
|
+
metadata: {}
|
42
40
|
post_install_message:
|
43
41
|
rdoc_options: []
|
44
42
|
require_paths:
|
45
43
|
- lib
|
46
44
|
required_ruby_version: !ruby/object:Gem::Requirement
|
47
|
-
none: false
|
48
45
|
requirements:
|
49
|
-
- -
|
46
|
+
- - '>='
|
50
47
|
- !ruby/object:Gem::Version
|
51
48
|
version: '0'
|
52
49
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
53
|
-
none: false
|
54
50
|
requirements:
|
55
|
-
- -
|
51
|
+
- - '>='
|
56
52
|
- !ruby/object:Gem::Version
|
57
53
|
version: '0'
|
58
54
|
requirements: []
|
59
55
|
rubyforge_project:
|
60
|
-
rubygems_version:
|
56
|
+
rubygems_version: 2.0.2
|
61
57
|
signing_key:
|
62
|
-
specification_version:
|
58
|
+
specification_version: 4
|
63
59
|
summary: Distribution divergences.
|
64
60
|
test_files: []
|
65
|
-
has_rdoc:
|