dina 1.3.5.0 → 2.0.0.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 40aecf4e774bc94c44792c675a7ec4feeb89a532fbd03f6d6413a4cea5e4eb43
-  data.tar.gz: bd816ce82e2bbb80f0328b25ef3c6950ed13e88ceddc2bdba94c4c3d0e56f27c
+  metadata.gz: 1352cad3aa67d164e8fb896dc19f78188000f0920b2ebc11e6ae6644e17e5865
+  data.tar.gz: f42dead269644b54f0d37cad6b92831fbaa0be455f22f45537f9b9b0e60bb67f
 SHA512:
-  metadata.gz: '039926da4bd1c3d4e8040a8439d8d609862615438efa92f5e373548a81939961221b2358ab7cc29723686c35cd815187d6205ccf49ceb4887cc019a13423a015'
-  data.tar.gz: 80b22bf203cbe6fe178cbf2cd3f19301b6d84c3c18744462203b21419d2d031cbf95985a70e1234a0b4a690d6a246a476694ececc71acee4321c3b451750f44f
+  metadata.gz: 15e3f18969c6719132d8ece300c0ee2a3483c1ba34d59289a65624480404d1d9b5a0685de68ebc2bfdeaf96812467e59a080a97d9bb24e82bcbd6b5dfbd837d6
+  data.tar.gz: 63d0e62162218d0e6777235877496c85a8da9e54d76628dcb861999829c22ec8d253913ac13afd6bbb891609322fdb8f3fec3a6dfa7ad438000d5d36b8581759

data/lib/dina/authentication/authentication.rb

@@ -52,7 +52,7 @@ module Dina
       Keycloak.auth_server_url = config.authorization_url
       Keycloak.realm = config.realm
 
-      if opts[:verify_ssl] && opts[:verify_ssl] == false
+      if opts.key?(:verify_ssl) && opts[:verify_ssl] == false
         Dina::BaseModel.connection_options[:ssl] = { verify: false }
       end
 

data/lib/dina/models/agent/identifier.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Identifier < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :namespace, type: :string
     property :value, type: :string
     property :createdBy, type: :string

data/lib/dina/models/agent/organization.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Organization < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :names, type: :array, default: [{languageCode: "EN", name: nil}, {languageCode: "FR", name: nil}]
     property :aliases, type: :array, default: []
     property :createdBy, type: :string

data/lib/dina/models/agent/person.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Person < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :displayName, type: :string, default: nil
     property :givenNames, type: :string
     property :familyNames, type: :string

data/lib/dina/models/assemblage.rb

@@ -2,7 +2,7 @@ require_rel 'base_model'
 
 module Dina
   class Assemblage < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :multilingualTitle, type: :multilingual_title

data/lib/dina/models/attachment.rb

@@ -2,7 +2,7 @@ require_rel 'base_model'
 
 module Dina
   class Attachment < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
 
     belongs_to :material_sample, shallow_path: true, class_name: "MaterialSample"
     belongs_to :collecting_event, shallow_path: true, class_name: "CollectingEvent"

data/lib/dina/models/base_model.rb

@@ -39,7 +39,7 @@ module Dina
 
     def initialize(params = {})
       symbolized_params = params.transform_keys(&:to_sym)
-      params["id"] = SecureRandom.uuid if !symbolized_params[:id]
+      params["id"] = SecureRandom.uuid_v7 if !symbolized_params[:id]
       super
       extend_model_methods
     end

data/lib/dina/models/institution.rb

@@ -2,7 +2,7 @@ require_rel 'base_model'
 
 module Dina
   class Institution < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :name, type: :string
     property :multilingualDescription, type: :multilingual_description
     property :webpage, type: :string

data/lib/dina/models/managed_attribute.rb

@@ -2,7 +2,7 @@ require_rel 'base_model'
 
 module Dina
   class ManagedAttribute < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :key, type: :string

data/lib/dina/models/material_sample/collecting_event.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class CollectingEvent < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :version, type: :integer
     property :dwcVerbatimCoordinates, type: :string

data/lib/dina/models/material_sample/collection.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Collection < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :code, type: :string

data/lib/dina/models/material_sample/collection_method.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class CollectionMethod < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :multilingualDescription, type: :multilingual_description

data/lib/dina/models/material_sample/collection_sequence_generator.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class CollectionSequenceGenerator < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :amount, type: :string
 
     def self.endpoint_path

data/lib/dina/models/material_sample/material_sample.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class MaterialSample < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :version, type: :integer
     property :dwcCatalogNumber, type: :string
     property :materialSampleName, type: :string

data/lib/dina/models/material_sample/organism.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Organism < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :lifeStage, type: :string
     property :sex, type: :string

data/lib/dina/models/material_sample/preparation_method.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class PreparationMethod < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :multilingualDescription, type: :multilingual_description

data/lib/dina/models/material_sample/preparation_type.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class PreparationType < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :multilingualDescription, type: :multilingual_description

data/lib/dina/models/material_sample/project.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Project < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :multilingualDescription, type: :multilingual_description

data/lib/dina/models/material_sample/protocol.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Protocol < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :protocolType, type: :string

data/lib/dina/models/object_store/derivative.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Derivative < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :bucket, type: :string
     property :fileIdentifier, type: :string
     property :fileExtension, type: :string

data/lib/dina/models/object_store/file.rb

@@ -4,7 +4,7 @@ require_rel 'file_connection'
 module Dina
 
   class File < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :filePath, type: :string
     property :fileName, type: :string

data/lib/dina/models/object_store/object_store.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class ObjectStore < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :createdBy, type: :string
     property :createdOn, type: :time
     property :group, type: :string

data/lib/dina/models/object_store/object_store_managed_attribute.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class ObjectStoreManagedAttribute < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :name, type: :string
     property :key, type: :string
     property :vocabularyElementType, type: :string

data/lib/dina/models/object_store/object_subtype.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class ObjectSubtype < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :createdBy, type: :string
     property :createdOn, type: :time
     property :dcType, type: :string

data/lib/dina/models/sequence/index_set.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class IndexSet < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :forwardAdapter, type: :string

data/lib/dina/models/sequence/molecular_sample.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class MolecularSample < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :createdBy, type: :string

data/lib/dina/models/sequence/ngs_workflow.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class NgsWorkflow < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
 
     validates_presence_of :group, message: "group is required"

data/lib/dina/models/sequence/pcr_batch.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class PcrBatch < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
 

data/lib/dina/models/sequence/pcr_primer.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class PcrPrimer < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :type, type: :string
     property :name, type: :string

data/lib/dina/models/sequence/product.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Product < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :upc, type: :string

data/lib/dina/models/sequence/region.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Region < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :symbol, type: :string

data/lib/dina/models/sequence/thermocycler_profile.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class ThermocyclerProfile < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :application, type: :string

data/lib/dina/models/storage/storage_unit.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class StorageUnit < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :barcode, type: :string

data/lib/dina/models/storage/storage_unit_type.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class StorageUnitType < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :group, type: :string
     property :name, type: :string
     property :isInseperable, type: :boolean

data/lib/dina/models/transaction/transaction.rb

@@ -2,7 +2,7 @@ require_rel '../base_model'
 
 module Dina
   class Transaction < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :transactionNumber, type: :string
     property :materialDirection, type: :string
     property :materialToBeReturned, type: :boolean

data/lib/dina/models/user.rb

@@ -2,7 +2,7 @@ require_rel 'base_model'
 
 module Dina
   class User < BaseModel
-    property :id, type: :string, default: SecureRandom.uuid
+    property :id, type: :string, default: SecureRandom.uuid_v7
     property :username, type: :string
     property :firstName, type: :string
     property :lastName, type: :string

data/lib/dina/version.rb

@@ -1,9 +1,9 @@
 module Dina
   class Version
 
-    MAJOR = 1
-    MINOR = 3
-    PATCH = 5
+    MAJOR = 2
+    MINOR = 0
+    PATCH = 0
     BUILD = 0
 
     def self.version

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: dina
 version: !ruby/object:Gem::Version
-  version: 1.3.5.0
+  version: 2.0.0.0
 platform: ruby
 authors:
 - David P. Shorthouse
@@ -9,7 +9,7 @@ authors:
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-12-15 00:00:00.000000000 Z
+date: 2024-03-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: json_api_client
@@ -17,14 +17,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.20'
+        version: '1.22'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.20'
+        version: '1.22'
 - !ruby/object:Gem::Dependency
   name: keycloak
   requirement: !ruby/object:Gem::Requirement
@@ -45,14 +45,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.2.0
+        version: 0.3.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.2.0
+        version: 0.3.0
 - !ruby/object:Gem::Dependency
   name: require_all
   requirement: !ruby/object:Gem::Requirement
@@ -226,14 +226,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '3.1'
+      version: '3.3'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.4.10
+rubygems_version: 3.5.3
 signing_key:
 specification_version: 4
 summary: DINA ruby gem