dina 0.1.0.0

data/lib/dina/search/search_mapping.rb

@@ -0,0 +1,19 @@
+require_rel 'base_search'
+
+module Dina
+  class SearchMapping < BaseSearch
+
+    def self.endpoint_path
+      "search-api/search-ws/mapping"
+    end
+
+    # index values: "agent", "material_sample", "object_store"
+    def self.execute(index:)
+      params = {
+        indexName: index_name(index: index)
+      }
+      super(params.compact)
+    end
+
+  end
+end

data/lib/dina/utils/identifier.rb

@@ -0,0 +1,62 @@
+# encoding: utf-8
+class String
+  def is_orcid?
+    ::Dina::Identifier.is_orcid_regex.match?(self) &&
+    ::Dina::Identifier.orcid_valid_checksum(self)
+  end
+
+  def is_wiki_id?
+    ::Dina::Identifier.is_wiki_regex.match?(self)
+  end
+
+  def is_doi?
+    ::Dina::Identifier.is_doi_regex.match?(self)
+  end
+
+  def orcid_from_url
+    ::Dina::Identifier.extract_orcid_regex.match(self)[0] rescue nil
+  end
+
+  def wiki_from_url
+    ::Dina::Identifier.extract_wiki_regex.match(self)[0] rescue nil
+  end
+
+end
+
+module Dina
+  class Identifier
+
+    class << self
+      def is_orcid_regex
+        /^0000-000(1-[5-9]|2-[0-9]|3-[0-4])\d{3}-\d{3}[\dX]$/
+      end
+
+      def is_wiki_regex
+        /^Q[0-9]{1,}$/
+      end
+
+      def is_doi_regex
+        /^10.\d{4,9}\/[-._;()\/:<>A-Z0-9]+$/i
+      end
+
+      def orcid_valid_checksum(orcid_string)
+        parts = orcid_string.scan(/[0-9X]/)
+        mod = parts[0..14].map(&:to_i)
+                          .inject { |sum, n| (sum + n)*2 }
+                          .modulo(11)
+        result = (12 - mod) % 11
+        parts.last == ((result == 10) ? "X" : result.to_s)
+      end
+
+      def extract_orcid_regex
+        /(?<=orcid\.org\/)(\d{4}-){3}\d{3}[0-9X]{1}/
+      end
+
+      def extract_wiki_regex
+        /(?:wikidata\.org\/(entity|wiki)\/)\K(Q[0-9]{1,})/
+      end
+
+    end
+
+  end
+end

data/lib/dina/utils/identifier_type.rb

@@ -0,0 +1,16 @@
+module Dina
+  class IdentifierType
+    attr_accessor :type
+    attr_accessor :uri
+
+    def initialize
+    end
+
+    def to_hash
+      hash = {}
+      instance_variables.each { |var| hash[var.to_s.delete('@')] = instance_variable_get(var) }
+      hash
+    end
+
+  end
+end

data/lib/dina/version.rb

@@ -0,0 +1,14 @@
+module Dina
+  class Version
+
+    MAJOR = 0
+    MINOR = 1
+    PATCH = 0
+    BUILD = 0
+
+    def self.version
+      [MAJOR, MINOR, PATCH, BUILD].compact.join('.').freeze
+    end
+
+  end
+end

data/lib/dina.rb

@@ -0,0 +1,17 @@
+require "keycloak"
+require "json_api_client"
+require "time"
+require "securerandom"
+require "require_all"
+require_all File.join(File.dirname(__FILE__), 'dina')
+
+module Dina
+
+  JsonApiClient::Paginating::NestedParamPaginator.page_param = "offset"
+  JsonApiClient::Paginating::NestedParamPaginator.per_page_param = "limit"
+  JsonApiClient::Schema.register array: Dina::ArrayCaster
+  JsonApiClient::Schema.register object: Dina::ObjectCaster
+  JsonApiClient::Schema.register multilingual_title: Dina::MultilingualTitleCaster
+  JsonApiClient::Schema.register multilingual_description: Dina::MultilingualDescriptionCaster
+
+end

metadata

@@ -0,0 +1,201 @@
+--- !ruby/object:Gem::Specification
+name: dina
+version: !ruby/object:Gem::Version
+  version: 0.1.0.0
+platform: ruby
+authors:
+- David P. Shorthouse
+autorequire:
+bindir: bin
+cert_chain: []
+date: 2022-08-23 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: json_api_client
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.20'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.20'
+- !ruby/object:Gem::Dependency
+  name: keycloak
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.2.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.2.1
+- !ruby/object:Gem::Dependency
+  name: securerandom
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.0
+- !ruby/object:Gem::Dependency
+  name: require_all
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.0.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 3.0.0
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '13'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.10'
+- !ruby/object:Gem::Dependency
+  name: rspec-uuid
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.5.0
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.5.0
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2'
+description: Authenicate against DINA's Keycloak and access its models
+email: david.shorthouse@agr.gc.ca
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/dina.rb
+- lib/dina/authentication/authentication.rb
+- lib/dina/casters/array_caster.rb
+- lib/dina/casters/multilingual_description.rb
+- lib/dina/casters/multilingual_description_caster.rb
+- lib/dina/casters/multilingual_title.rb
+- lib/dina/casters/multilingual_title_caster.rb
+- lib/dina/casters/object_caster.rb
+- lib/dina/components/determination.rb
+- lib/dina/components/georeference_assertion.rb
+- lib/dina/exceptions.rb
+- lib/dina/models/acquisition_event.rb
+- lib/dina/models/assemblage.rb
+- lib/dina/models/attachment.rb
+- lib/dina/models/base_model.rb
+- lib/dina/models/bucket.rb
+- lib/dina/models/collecting_event.rb
+- lib/dina/models/collecting_method.rb
+- lib/dina/models/collection.rb
+- lib/dina/models/derivative.rb
+- lib/dina/models/file.rb
+- lib/dina/models/identifier.rb
+- lib/dina/models/institution.rb
+- lib/dina/models/managed_attribute.rb
+- lib/dina/models/material_sample.rb
+- lib/dina/models/object_store.rb
+- lib/dina/models/object_store_managed_attribute.rb
+- lib/dina/models/object_subtype.rb
+- lib/dina/models/organism.rb
+- lib/dina/models/organization.rb
+- lib/dina/models/person.rb
+- lib/dina/models/preparation_type.rb
+- lib/dina/models/project.rb
+- lib/dina/models/protocol.rb
+- lib/dina/models/storage_unit.rb
+- lib/dina/models/storage_unit_type.rb
+- lib/dina/models/user.rb
+- lib/dina/search/base_search.rb
+- lib/dina/search/search.rb
+- lib/dina/search/search_autocomplete.rb
+- lib/dina/search/search_count.rb
+- lib/dina/search/search_mapping.rb
+- lib/dina/utils/identifier.rb
+- lib/dina/utils/identifier_type.rb
+- lib/dina/version.rb
+homepage: ''
+licenses:
+- MIT
+metadata: {}
+post_install_message:
+rdoc_options:
+- "--encoding"
+- UTF-8
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '3.1'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 3.3.7
+signing_key:
+specification_version: 4
+summary: DINA ruby gem
+test_files: []