dimus-biodiversity 0.0.13 → 0.0.15

data/spec/parser/scientific_name_dirty.spec.rb

@@ -28,6 +28,10 @@ describe ScientificNameDirty do
     parse(input).details
   end
   
+  def pos(input)
+    parse(input).pos
+  end
+  
   it 'should parse clean names' do
     parse("Betula verucose (L.) Bar. 1899").should_not be_nil
   end
@@ -37,27 +41,35 @@ describe ScientificNameDirty do
     value("Anthoscopus Cabanis [185?]").should == "Anthoscopus Cabanis (185?)"
     parse("Anthoscopus Cabanis [1851?]").should_not be_nil
     value("Anthoscopus Cabanis [1851]").should == "Anthoscopus Cabanis (1851)"
-    value("Anthoscopus Cabanis [1851?]").should == "Anthoscopus Cabanis (1851?)"
-    details("Anthoscopus Cabanis [1851?]").should == {:uninomial=>"Anthoscopus", :authors=>{:names=>["Cabanis"], :approximate_year=>"(1851?)"}, :name_part_verbatim=>"Anthoscopus", :auth_part_verbatim=>"Cabanis [1851?]"}
-    
-    parse("Trismegistia monodii Ando, 1973 [1974]").should_not be_nil
-    details("Trismegistia monodii Ando, 1973 [1974]").should == {:genus=>"Trismegistia", :species=>"monodii", :authors=>{:names=>["Ando"], :ambiguous_year=>"1973 [1974]"}, :name_part_verbatim=>"Trismegistia monodii", :auth_part_verbatim=>"Ando, 1973 [1974]"}
+    sn = "Anthoscopus Cabanis [1851?]"
+    value(sn).should == "Anthoscopus Cabanis (1851?)"
+    details(sn).should == {:uninomial=>"Anthoscopus", :authors=>{:names=>["Cabanis"], :approximate_year=>"(1851?)"}, :name_part_verbatim=>"Anthoscopus", :auth_part_verbatim=>"Cabanis [1851?]"}
+    pos(sn).should == {0=>["uninomial", 11], 12=>["author_word", 19], 21=>["year", 26]}
+    sn = "Trismegistia monodii Ando, 1973 [1974]"
+    parse(sn).should_not be_nil
+    value(sn).should == 'Trismegistia monodii Ando 1973 [1974]' #should it be 'Trismegistia monodii Ando 1973 (1974)' instead?
+    details(sn).should == {:genus=>"Trismegistia", :species=>"monodii", :authors=>{:names=>["Ando"], :ambiguous_year=>"1973 [1974]"}, :name_part_verbatim=>"Trismegistia monodii", :auth_part_verbatim=>"Ando, 1973 [1974]"}
+    pos(sn).should ==  {0=>["genus", 12], 13=>["species", 20], 21=>["author_word", 25], 27=>["year", 31], 33=>["year", 37]} 
     parse("Zygaena witti Wiegel [1973]").should_not be_nil
-    parse("Deyeuxia coarctata Kunth, 1815 [1816]").should_not be_nil
+    sn = "Deyeuxia coarctata Kunth, 1815 [1816]"
+    parse(sn).should_not be_nil
+    pos(sn).should == {0=>["genus", 8], 9=>["species", 18], 19=>["author_word", 24], 26=>["year", 30], 32=>["year", 36]}
   end
 
   it 'should parse year with page number' do
-    val = "Gymnodactylus irregularis WERMUTH 1965: 54"
-    parse(val).should_not be_nil
-    value(val).should == "Gymnodactylus irregularis WERMUTH 1965"
-    details(val).should == {:genus=>"Gymnodactylus", :species=>"irregularis", :authors=>{:names=>["WERMUTH"], :year=>"1965"}, :name_part_verbatim=>"Gymnodactylus irregularis", :auth_part_verbatim=>"WERMUTH 1965: 54"}   
+    sn = "Gymnodactylus irregularis WERMUTH 1965: 54"
+    parse(sn).should_not be_nil
+    value(sn).should == "Gymnodactylus irregularis WERMUTH 1965"
+    details(sn).should == {:genus=>"Gymnodactylus", :species=>"irregularis", :authors=>{:names=>["WERMUTH"], :year=>"1965"}, :name_part_verbatim=>"Gymnodactylus irregularis", :auth_part_verbatim=>"WERMUTH 1965: 54"}   
+    pos(sn).should ==  {0=>["genus", 13], 14=>["species", 25], 26=>["author_word", 33], 34=>["year", 38]} 
   end
   
   it 'should parse double parenthesis' do
-   val = "Meiostemon humbertii ( (H. Perrier) ) Exell & Stace"
-    parse(val).should_not be_nil
-    value(val).should == "Meiostemon humbertii (H. Perrier) Exell et Stace"
-    details(val).should == {:genus=>"Meiostemon", :species=>"humbertii", :orig_authors=>{:names=>["H. Perrier"]}, :authors=>{:names=>["Exell", "Stace"]}, :name_part_verbatim=>"Meiostemon humbertii", :auth_part_verbatim=>"( (H. Perrier) ) Exell & Stace"}
+    sn = "Meiostemon humbertii ( (H. Perrier) ) Exell & Stace"
+    parse(sn).should_not be_nil
+    value(sn).should == "Meiostemon humbertii (H. Perrier) Exell et Stace"
+    details(sn).should == {:genus=>"Meiostemon", :species=>"humbertii", :orig_authors=>{:names=>["H. Perrier"]}, :authors=>{:names=>["Exell", "Stace"]}, :name_part_verbatim=>"Meiostemon humbertii", :auth_part_verbatim=>"( (H. Perrier) ) Exell & Stace"}
+    pos(sn).should == {0=>["genus", 10], 11=>["species", 20], 24=>["author_word", 26], 27=>["author_word", 34], 38=>["author_word", 43], 46=>["author_word", 51]}
   end  
   
   # Acomys "Geoffroy, I." 1838
@@ -80,11 +92,15 @@ describe ScientificNameDirty do
     parse("Tridentella tangeroae Bruce, 1988B").should_not be_nil
     parse("Tridentella tangeroae Bruce, 1988b").should_not be_nil
     parse("Tridentella tangeroae Bruce, 1988d").should_not be_nil
-    parse("Tridentella tangeroae Bruce, 198?").should_not be_nil
+    sn = "Tridentella tangeroae Bruce, 198?"
+    parse(sn).should_not be_nil
+    pos(sn).should == {0=>["genus", 11], 12=>["species", 21], 22=>["author_word", 27], 29=>["year", 33]}
   end
 
   it 'should parse double years' do
-    parse("Tridentella tangeroae Bruce, 1987-92").should_not be_nil
+    sn = "Tridentella tangeroae Bruce, 1987-92"
+    parse(sn).should_not be_nil
+    pos(sn).should == {0=>["genus", 11], 12=>["species", 21], 22=>["author_word", 27], 29=>["year", 36]}
   end
 
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: dimus-biodiversity
 version: !ruby/object:Gem::Version 
-  version: 0.0.13
+  version: 0.0.15
 platform: ruby
 authors: 
 - Dmitry Mozzherin