dimus-biodiversity 0.0.12 → 0.0.13

data/spec/parser/scientific_name_dirty.spec.rb

@@ -0,0 +1,90 @@
+dir = File.dirname("__FILE__")
+require 'rubygems'
+require 'spec'
+require 'treetop'
+require 'yaml'
+
+Treetop.load(File.expand_path(dir + '../../lib/biodiversity/parser/scientific_name_clean'))
+Treetop.load(File.expand_path(dir + '../../lib/biodiversity/parser/scientific_name_dirty'))
+
+describe ScientificNameDirty do
+  before(:all) do
+    @parser = ScientificNameDirtyParser.new 
+  end
+  
+  def parse(input)
+    @parser.parse(input)
+  end
+  
+  def value(input)
+    parse(input).value
+  end
+  
+  def canonical(input)
+    parse(input).canonical
+  end
+  
+  def details(input)
+    parse(input).details
+  end
+  
+  it 'should parse clean names' do
+    parse("Betula verucose (L.) Bar. 1899").should_not be_nil
+  end
+  
+  it 'should parse year with []' do
+    parse("Anthoscopus Cabanis [1851]").should_not be_nil
+    value("Anthoscopus Cabanis [185?]").should == "Anthoscopus Cabanis (185?)"
+    parse("Anthoscopus Cabanis [1851?]").should_not be_nil
+    value("Anthoscopus Cabanis [1851]").should == "Anthoscopus Cabanis (1851)"
+    value("Anthoscopus Cabanis [1851?]").should == "Anthoscopus Cabanis (1851?)"
+    details("Anthoscopus Cabanis [1851?]").should == {:uninomial=>"Anthoscopus", :authors=>{:names=>["Cabanis"], :approximate_year=>"(1851?)"}, :name_part_verbatim=>"Anthoscopus", :auth_part_verbatim=>"Cabanis [1851?]"}
+    
+    parse("Trismegistia monodii Ando, 1973 [1974]").should_not be_nil
+    details("Trismegistia monodii Ando, 1973 [1974]").should == {:genus=>"Trismegistia", :species=>"monodii", :authors=>{:names=>["Ando"], :ambiguous_year=>"1973 [1974]"}, :name_part_verbatim=>"Trismegistia monodii", :auth_part_verbatim=>"Ando, 1973 [1974]"}
+    parse("Zygaena witti Wiegel [1973]").should_not be_nil
+    parse("Deyeuxia coarctata Kunth, 1815 [1816]").should_not be_nil
+  end
+
+  it 'should parse year with page number' do
+    val = "Gymnodactylus irregularis WERMUTH 1965: 54"
+    parse(val).should_not be_nil
+    value(val).should == "Gymnodactylus irregularis WERMUTH 1965"
+    details(val).should == {:genus=>"Gymnodactylus", :species=>"irregularis", :authors=>{:names=>["WERMUTH"], :year=>"1965"}, :name_part_verbatim=>"Gymnodactylus irregularis", :auth_part_verbatim=>"WERMUTH 1965: 54"}   
+  end
+  
+  it 'should parse double parenthesis' do
+   val = "Meiostemon humbertii ( (H. Perrier) ) Exell & Stace"
+    parse(val).should_not be_nil
+    value(val).should == "Meiostemon humbertii (H. Perrier) Exell et Stace"
+    details(val).should == {:genus=>"Meiostemon", :species=>"humbertii", :orig_authors=>{:names=>["H. Perrier"]}, :authors=>{:names=>["Exell", "Stace"]}, :name_part_verbatim=>"Meiostemon humbertii", :auth_part_verbatim=>"( (H. Perrier) ) Exell & Stace"}
+  end  
+  
+  # Acomys "Geoffroy, I." 1838
+  # Verpericola megasoma "Dall" Pils.
+  # Auricotes neoclayae "Price, Hellenthal and Palma 2003"
+  # Leccinum cinnamomeum var. cinnamomeum "A.H. Sm.
+  
+  # it 'should parse quote' do
+  #   val = 'Acomys "Geoffroy, I." 1838'
+  # end
+
+  # it 'should parse author with []' do
+  #  # OK parse("Farsetia mutabilis [ R.Br. ]").should_not be_nil
+  #  parse("Farsetia mutabilis [R.Br.]").should_not be_nil
+  #  # value("Farsetia mutabilis [R.Br.]").should == "Farsetia mutabilis [R.Br.]"
+  #  # details("Farsetia mutabilis [R.Br.]").should == {}
+  # end
+  
+  it 'should parse dirty years' do
+    parse("Tridentella tangeroae Bruce, 1988B").should_not be_nil
+    parse("Tridentella tangeroae Bruce, 1988b").should_not be_nil
+    parse("Tridentella tangeroae Bruce, 1988d").should_not be_nil
+    parse("Tridentella tangeroae Bruce, 198?").should_not be_nil
+  end
+
+  it 'should parse double years' do
+    parse("Tridentella tangeroae Bruce, 1987-92").should_not be_nil
+  end
+
+end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: dimus-biodiversity
 version: !ruby/object:Gem::Version 
-  version: 0.0.12
+  version: 0.0.13
 platform: ruby
 authors: 
 - Dmitry Mozzherin
@@ -38,6 +38,9 @@ files:
 - conf/environment.rb
 - spec/parser
 - spec/parser/scientific_name.spec.rb
+- spec/parser/scientific_name_canonical.spec.rb
+- spec/parser/scientific_name_clean.spec.rb
+- spec/parser/scientific_name_dirty.spec.rb
 - spec/guid
 - spec/guid/lsid.spec.rb
 - lib/biodiversity
@@ -45,8 +48,12 @@ files:
 - lib/biodiversity/guid.rb
 - lib/biodiversity/guid
 - lib/biodiversity/guid/lsid.rb
-- lib/biodiversity/parser/scientific_name.rb
-- lib/biodiversity/parser/scientific_name.treetop
+- lib/biodiversity/parser/scientific_name_clean.rb
+- lib/biodiversity/parser/scientific_name_canonical.rb
+- lib/biodiversity/parser/scientific_name_dirty.rb
+- lib/biodiversity/parser/scientific_name_canonical.treetop
+- lib/biodiversity/parser/scientific_name_clean.treetop
+- lib/biodiversity/parser/scientific_name_dirty.treetop
 - lib/biodiversity/parser.rb
 - lib/biodiversity.rb
 - bin/nnparse