dicom 0.7 → 0.8
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- data/CHANGELOG +55 -0
- data/README +51 -29
- data/init.rb +1 -0
- data/lib/dicom.rb +35 -21
- data/lib/dicom/{Anonymizer.rb → anonymizer.rb} +178 -80
- data/lib/dicom/constants.rb +121 -0
- data/lib/dicom/d_client.rb +888 -0
- data/lib/dicom/d_library.rb +208 -0
- data/lib/dicom/d_object.rb +424 -0
- data/lib/dicom/d_read.rb +433 -0
- data/lib/dicom/d_server.rb +397 -0
- data/lib/dicom/d_write.rb +420 -0
- data/lib/dicom/data_element.rb +175 -0
- data/lib/dicom/{Dictionary.rb → dictionary.rb} +390 -398
- data/lib/dicom/elements.rb +82 -0
- data/lib/dicom/file_handler.rb +116 -0
- data/lib/dicom/item.rb +87 -0
- data/lib/dicom/{Link.rb → link.rb} +749 -388
- data/lib/dicom/ruby_extensions.rb +44 -35
- data/lib/dicom/sequence.rb +62 -0
- data/lib/dicom/stream.rb +493 -0
- data/lib/dicom/super_item.rb +696 -0
- data/lib/dicom/super_parent.rb +615 -0
- metadata +25 -18
- data/DOCUMENTATION +0 -469
- data/lib/dicom/DClient.rb +0 -584
- data/lib/dicom/DLibrary.rb +0 -194
- data/lib/dicom/DObject.rb +0 -1579
- data/lib/dicom/DRead.rb +0 -532
- data/lib/dicom/DServer.rb +0 -304
- data/lib/dicom/DWrite.rb +0 -410
- data/lib/dicom/FileHandler.rb +0 -50
- data/lib/dicom/Stream.rb +0 -354
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# Copyright 2010 Christoffer Lervag
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# This file contains module constants used by the Ruby DICOM library.
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module DICOM
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# Ruby DICOM version string.
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VERSION = "0.8"
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# Ruby DICOM's implementation UID.
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UID = "1.2.826.0.1.3680043.8.641"
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# Ruby DICOM name & version (max 16 characters).
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NAME = "RUBY_DCM_" + DICOM::VERSION
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# Application title.
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SOURCE_APP_TITLE = "RUBY_DICOM"
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# Item tag.
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ITEM_TAG = "FFFE,E000"
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# All Item related tags (includes both types of delimitation items).
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ITEM_TAGS = ["FFFE,E000", "FFFE,E00D", "FFFE,E0DD"]
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# Item delimiter tag.
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ITEM_DELIMITER = "FFFE,E00D"
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# Sequence delimiter tag.
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SEQUENCE_DELIMITER = "FFFE,E0DD"
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# All delimiter tags.
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DELIMITER_TAGS = ["FFFE,E00D", "FFFE,E0DD"]
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# The VR used for the item elements.
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ITEM_VR = " "
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# Pixel tag.
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PIXEL_TAG = "7FE0,0010"
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# Name of the pixel tag when holding encapsulated data.
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ENCAPSULATED_PIXEL_NAME = "Encapsulated Pixel Data"
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# Name of encapsulated items.
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PIXEL_ITEM_NAME = "Pixel Data Item"
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# File meta group.
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META_GROUP = "0002"
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# Group length element.
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GROUP_LENGTH = "0000"
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# Implicit, little endian (the default transfer syntax).
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IMPLICIT_LITTLE_ENDIAN = "1.2.840.10008.1.2"
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# Explicit, little endian transfer syntax.
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EXPLICIT_LITTLE_ENDIAN = "1.2.840.10008.1.2.1"
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# Explicit, big endian transfer syntax.
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EXPLICIT_BIG_ENDIAN = "1.2.840.10008.1.2.2"
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# Verification SOP class UID.
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VERIFICATION_SOP = "1.2.840.10008.1.1"
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# Application context SOP class UID.
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APPLICATION_CONTEXT = "1.2.840.10008.3.1.1.1"
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# Network transmission successful.
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SUCCESS = 0
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# Network proposition accepted.
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ACCEPTANCE = 0
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# Presentation context rejected by abstract syntax.
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ABSTRACT_SYNTAX_REJECTED = 3
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# Presentation context rejected by transfer syntax.
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TRANSFER_SYNTAX_REJECTED = 4
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# Some network command element codes:
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C_STORE_RQ = 1 # (encodes to 0001H as US)
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C_GET_RQ = 16 # (encodes to 0010H as US)
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C_FIND_RQ = 32 # (encodes to 0020H as US)
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C_MOVE_RQ = 33 # (encodes to 0021H as US)
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C_ECHO_RQ = 48 # (encodes to 0030 as US)
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C_CANCEL_RQ = 4095 # (encodes to 0FFFH as US)
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C_STORE_RSP = 32769 # (encodes to 8001H as US)
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C_GET_RSP = 32784 # (encodes to 8010H as US)
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C_FIND_RSP = 32800 # (encodes to 8020H as US)
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C_MOVE_RSP = 32801 # (encodes to 8021H as US)
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C_ECHO_RSP = 32816 # (encodes to 8030H as US)
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NO_DATA_SET_PRESENT = 257 # (encodes to 0101H as US)
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DATA_SET_PRESENT = 1
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DEFAULT_MESSAGE_ID = 1
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# The network communication flags:
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DATA_MORE_FRAGMENTS = "00"
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COMMAND_MORE_FRAGMENTS = "01"
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DATA_LAST_FRAGMENT = "02"
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COMMAND_LAST_FRAGMENT = "03"
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# Network communication PDU types:
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PDU_ASSOCIATION_REQUEST = "01"
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PDU_ASSOCIATION_ACCEPT = "02"
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PDU_ASSOCIATION_REJECT = "03"
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PDU_DATA = "04"
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PDU_RELEASE_REQUEST = "05"
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PDU_RELEASE_RESPONSE = "06"
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PDU_ABORT = "07"
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# Network communication item types:
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ITEM_APPLICATION_CONTEXT = "10"
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ITEM_PRESENTATION_CONTEXT_REQUEST = "20"
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ITEM_PRESENTATION_CONTEXT_RESPONSE = "21"
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ITEM_ABSTRACT_SYNTAX = "30"
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ITEM_TRANSFER_SYNTAX = "40"
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ITEM_USER_INFORMATION = "50"
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ITEM_MAX_LENGTH = "51"
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ITEM_IMPLEMENTATION_UID = "52"
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ITEM_MAX_OPERATIONS_INVOKED = "53"
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ITEM_ROLE_NEGOTIATION = "54"
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ITEM_IMPLEMENTATION_VERSION = "55"
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# Varaibles used to determine endianness.
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x = 0xdeadbeef
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endian_type = {
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Array(x).pack("V*") => false, # Little
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Array(x).pack("N*") => true # Big
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}
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# System (CPU) Endianness.
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CPU_ENDIAN = endian_type[Array(x).pack("L*")]
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# Ruby DICOM's library (data dictionary).
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LIBRARY = DICOM::DLibrary.new
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end
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# Copyright 2009-2010 Christoffer Lervag
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module DICOM
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# This class contains code for handling the client side of DICOM TCP/IP network communication.
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#
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#--
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# FIXME: The code which waits for incoming network packets seems to be very CPU intensive. Perhaps there is a more elegant way to wait for incoming messages?
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#
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class DClient
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# The name of this client (application entity).
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attr_accessor :ae
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# The name of the server (application entity).
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attr_accessor :host_ae
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# The IP adress of the server.
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attr_accessor :host_ip
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# The maximum allowed size of network packages (in bytes).
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attr_accessor :max_package_size
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# The network port to be used.
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attr_accessor :port
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# The maximum period the client will wait on an answer from a server before aborting the communication.
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attr_accessor :timeout
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# A boolean which defines if notices/warnings/errors will be printed to the screen (true) or not (false).
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attr_accessor :verbose
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# An array, where each index contains a hash with the data elements received in a command response (with tags as keys).
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attr_reader :command_results
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# An array, where each index contains a hash with the data elements received in a data response (with tags as keys).
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attr_reader :data_results
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# An array containing any error messages recorded.
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attr_reader :errors
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# An array containing any status messages recorded.
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attr_reader :notices
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# Creates a DClient instance.
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#
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# === Parameters
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#
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# * <tt>host_ip</tt> -- String. The IP adress of the server which you are going to communicate with.
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# * <tt>port</tt> -- Fixnum. The network port to be used.
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# * <tt>options</tt> -- A hash of parameters.
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#
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# === Options
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#
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# * <tt>:ae</tt> -- String. The name of this client (application entity).
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# * <tt>:host_ae</tt> -- String. The name of the server (application entity).
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# * <tt>:max_package_size</tt> -- Fixnum. The maximum allowed size of network packages (in bytes).
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# * <tt>:timeout</tt> -- Fixnum. The maximum period the server will wait on an answer from a client before aborting the communication.
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# * <tt>:verbose</tt> -- Boolean. If set to false, the DClient instance will run silently and not output warnings and error messages to the screen. Defaults to true.
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#
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# === Examples
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#
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# # Create a client instance using default settings:
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# node = DICOM::DClient.new("10.1.25.200", 104)
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#
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def initialize(host_ip, port, options={})
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require 'socket'
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# Required parameters:
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@host_ip = host_ip
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@port = port
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# Optional parameters (and default values):
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@ae = options[:ae] || "RUBY_DICOM"
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@host_ae = options[:host_ae] || "DEFAULT"
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@max_package_size = options[:max_package_size] || 32768 # 16384
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@timeout = options[:timeout] || 10 # seconds
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@min_length = 12 # minimum number of bytes to expect in an incoming transmission
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@verbose = options[:verbose]
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@verbose = true if @verbose == nil # Default verbosity is 'on'.
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# Other instance variables:
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@errors = Array.new # errors and warnings are put in this array
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@notices = Array.new # information on successful transmissions are put in this array
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# Variables used for monitoring state of transmission:
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@association = nil # DICOM Association status
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@request_approved = nil # Status of our DICOM request
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@release = nil # Status of received, valid release response
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# Results from a query:
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@command_results = Array.new
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@data_results = Array.new
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# Set default values like transfer syntax, user information, endianness:
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set_default_values
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set_user_information_array
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# Initialize the network package handler:
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@link = Link.new(:ae => @ae, :host_ae => @host_ae, :max_package_size => @max_package_size, :timeout => @timeout)
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end
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# Tests the connection to the server by performing a C-ECHO.
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#
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def echo
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# Verification SOP Class:
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@abstract_syntaxes = [VERIFICATION_SOP]
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perform_echo
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end
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# Queries a service class provider for images that match the specified criteria.
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#
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# === Parameters
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#
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# * <tt>options</tt> -- A hash of parameters.
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#
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# === Options
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#
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# * <tt>"0008,0018"</tt> -- SOP Instance UID
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# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
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# * <tt>"0020,000D"</tt> -- Study Instance UID
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# * <tt>"0020,000E"</tt> -- Series Instance UID
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# * <tt>"0020,0013"</tt> -- Instance Number
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#
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# === Examples
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#
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# node.find_images("0020,000D" => "1.2.840.1145.342", "0020,000E" => "1.3.6.1.4.1.2452.6.687844")
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#
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def find_images(options={})
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# Study Root Query/Retrieve Information Model - FIND:
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@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.1"]
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# Prepare data elements for this operation:
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set_data_fragment_find_images
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set_data_options(options)
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perform_find
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return @data_results
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end
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# Queries a service class provider for patients that match the specified criteria.
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#
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# === Parameters
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#
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# * <tt>options</tt> -- A hash of parameters.
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#
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# === Options
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#
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# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
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# * <tt>"0010,0010"</tt> -- Patient's Name
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# * <tt>"0010,0020"</tt> -- Patient ID
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# * <tt>"0010,0030"</tt> -- Patient's Birth Date
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# * <tt>"0010,0040"</tt> -- Patient's Sex
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#
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# === Examples
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#
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# node.find_patients("0010,0010" => "James*")
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#
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def find_patients(options={})
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# Patient Root Query/Retrieve Information Model - FIND:
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@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.1.1"]
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# Prepare data elements for this operation:
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set_data_fragment_find_patients
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set_data_options(options)
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perform_find
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return @data_results
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end
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# Queries a service class provider for series that match the specified criteria.
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#
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# === Parameters
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#
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# * <tt>options</tt> -- A hash of parameters.
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#
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# === Options
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#
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# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
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# * <tt>"0008,0060"</tt> -- Modality
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# * <tt>"0008,103E"</tt> -- Series Description
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# * <tt>"0020,000D"</tt> -- Study Instance UID
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# * <tt>"0020,000E"</tt> -- Series Instance UID
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# * <tt>"0020,0011"</tt> -- Series Number
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#
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# === Examples
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#
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# node.find_series("0020,000D" => "1.2.840.1145.342")
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#
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def find_series(options={})
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# Study Root Query/Retrieve Information Model - FIND:
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@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.1"]
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# Prepare data elements for this operation:
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set_data_fragment_find_series
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set_data_options(options)
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perform_find
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return @data_results
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end
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# Queries a service class provider for studies that match the specified criteria.
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#
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# === Parameters
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#
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# * <tt>options</tt> -- A hash of parameters.
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#
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# === Options
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#
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# * <tt>"0008,0020"</tt> -- Study Date
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# * <tt>"0008,0030"</tt> -- Study Time
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# * <tt>"0008,0050"</tt> -- Accession Number
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# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
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# * <tt>"0008,0090"</tt> -- Referring Physician's Name
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# * <tt>"0008,1030"</tt> -- Study Description
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# * <tt>"0008,1060"</tt> -- Name of Physician(s) Reading Study
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# * <tt>"0010,0010"</tt> -- Patient's Name
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# * <tt>"0010,0020"</tt> -- Patient ID
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# * <tt>"0010,0030"</tt> -- Patient's Birth Date
|
197
|
+
# * <tt>"0010,0040"</tt> -- Patient's Sex
|
198
|
+
# * <tt>"0020,000D"</tt> -- Study Instance UID
|
199
|
+
# * <tt>"0020,0010"</tt> -- Study ID
|
200
|
+
#
|
201
|
+
# === Examples
|
202
|
+
#
|
203
|
+
# node.find_studies("0008,0020" => "20090604-", "0010,000D" => "123456789")
|
204
|
+
#
|
205
|
+
def find_studies(options={})
|
206
|
+
# Study Root Query/Retrieve Information Model - FIND:
|
207
|
+
@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.1"]
|
208
|
+
# Prepare data elements for this operation:
|
209
|
+
set_data_fragment_find_studies
|
210
|
+
set_data_options(options)
|
211
|
+
perform_find
|
212
|
+
return @data_results
|
213
|
+
end
|
214
|
+
|
215
|
+
# Retrieves a DICOM file from a service class provider (SCP/PACS).
|
216
|
+
#
|
217
|
+
# === Restrictions
|
218
|
+
#
|
219
|
+
# * This method has never actually been tested, and as such, it is probably not working! Feedback is welcome.
|
220
|
+
#
|
221
|
+
# === Parameters
|
222
|
+
#
|
223
|
+
# * <tt>path</tt> -- The path where incoming files will be saved.
|
224
|
+
# * <tt>options</tt> -- A hash of parameters.
|
225
|
+
#
|
226
|
+
# === Options
|
227
|
+
#
|
228
|
+
# * <tt>"0008,0018"</tt> -- SOP Instance UID
|
229
|
+
# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
|
230
|
+
# * <tt>"0020,000D"</tt> -- Study Instance UID
|
231
|
+
# * <tt>"0020,000E"</tt> -- Series Instance UID
|
232
|
+
#
|
233
|
+
# === Examples
|
234
|
+
#
|
235
|
+
# node.get_image("c:/dicom/", "0008,0018" => sop_uid, "0020,000D" => study_uid, "0020,000E" => series_uid)
|
236
|
+
#
|
237
|
+
def get_image(path, options={})
|
238
|
+
# Study Root Query/Retrieve Information Model - GET:
|
239
|
+
@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.3"]
|
240
|
+
# Transfer the current options to the data_elements hash:
|
241
|
+
set_command_fragment_get
|
242
|
+
# Prepare data elements for this operation:
|
243
|
+
set_data_fragment_get_image
|
244
|
+
set_data_options(options)
|
245
|
+
perform_get(path)
|
246
|
+
end
|
247
|
+
|
248
|
+
# Moves a single image to a DICOM server.
|
249
|
+
#
|
250
|
+
# === Notes
|
251
|
+
#
|
252
|
+
# * This DICOM node must be a third party (not yourself).
|
253
|
+
#
|
254
|
+
# === Parameters
|
255
|
+
#
|
256
|
+
# * <tt>destination</tt> -- String. The name (AE title) of the DICOM server which will receive the file.
|
257
|
+
# * <tt>options</tt> -- A hash of parameters.
|
258
|
+
#
|
259
|
+
# === Options
|
260
|
+
#
|
261
|
+
# * <tt>"0008,0018"</tt> -- SOP Instance UID
|
262
|
+
# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
|
263
|
+
# * <tt>"0020,000D"</tt> -- Study Instance UID
|
264
|
+
# * <tt>"0020,000E"</tt> -- Series Instance UID
|
265
|
+
#
|
266
|
+
# === Examples
|
267
|
+
#
|
268
|
+
# node.move_image("SOME_SERVER", "0008,0018" => sop_uid, "0020,000D" => study_uid, "0020,000E" => series_uid)
|
269
|
+
#
|
270
|
+
def move_image(destination, options={})
|
271
|
+
# Study Root Query/Retrieve Information Model - MOVE:
|
272
|
+
@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.2"]
|
273
|
+
# Transfer the current options to the data_elements hash:
|
274
|
+
set_command_fragment_move(destination)
|
275
|
+
# Prepare data elements for this operation:
|
276
|
+
set_data_fragment_move_image
|
277
|
+
set_data_options(options)
|
278
|
+
perform_move
|
279
|
+
end
|
280
|
+
|
281
|
+
# Move an entire study to a DICOM server.
|
282
|
+
#
|
283
|
+
# === Notes
|
284
|
+
#
|
285
|
+
# * This DICOM node must be a third party (not yourself).
|
286
|
+
#
|
287
|
+
# === Parameters
|
288
|
+
#
|
289
|
+
# * <tt>destination</tt> -- String. The name (AE title) of the DICOM server which will receive the files.
|
290
|
+
# * <tt>options</tt> -- A hash of parameters.
|
291
|
+
#
|
292
|
+
# === Options
|
293
|
+
#
|
294
|
+
# * <tt>"0008,0052"</tt> -- Query/Retrieve Level
|
295
|
+
# * <tt>"0010,0020"</tt> -- Patient ID
|
296
|
+
# * <tt>"0020,000D"</tt> -- Study Instance UID
|
297
|
+
#
|
298
|
+
# === Examples
|
299
|
+
#
|
300
|
+
# node.move_study("SOME_SERVER", "0010,0020" => pat_id, "0020,000D" => study_uid)
|
301
|
+
#
|
302
|
+
def move_study(destination, options={})
|
303
|
+
# Study Root Query/Retrieve Information Model - MOVE:
|
304
|
+
@abstract_syntaxes = ["1.2.840.10008.5.1.4.1.2.2.2"]
|
305
|
+
# Transfer the current options to the data_elements hash:
|
306
|
+
set_command_fragment_move(destination)
|
307
|
+
# Prepare data elements for this operation:
|
308
|
+
set_data_fragment_move_study
|
309
|
+
set_data_options(options)
|
310
|
+
perform_move
|
311
|
+
end
|
312
|
+
|
313
|
+
# Sends one or more DICOM files to a service class provider (SCP/PACS).
|
314
|
+
#
|
315
|
+
# === Parameters
|
316
|
+
#
|
317
|
+
# * <tt>files</tt> -- A single file path or an array of paths, or a DObject or an array of DObject instances.
|
318
|
+
#
|
319
|
+
# === Examples
|
320
|
+
#
|
321
|
+
# node.send("my_file.dcm")
|
322
|
+
#
|
323
|
+
def send(files)
|
324
|
+
# Prepare the DICOM object(s):
|
325
|
+
objects, @abstract_syntaxes, success, message = load_files(files)
|
326
|
+
if success
|
327
|
+
# Open a DICOM link:
|
328
|
+
establish_association
|
329
|
+
if @association
|
330
|
+
if @request_approved
|
331
|
+
# Continue with our c-store operation, since our request was accepted.
|
332
|
+
# Handle the transmission:
|
333
|
+
perform_send(objects)
|
334
|
+
end
|
335
|
+
end
|
336
|
+
# Close the DICOM link:
|
337
|
+
establish_release
|
338
|
+
else
|
339
|
+
# Failed when loading the specified parameter as DICOM file(s). Will not transmit.
|
340
|
+
add_error(message)
|
341
|
+
end
|
342
|
+
end
|
343
|
+
|
344
|
+
# Tests the connection to the server in a very simple way by negotiating an association and then releasing it.
|
345
|
+
#
|
346
|
+
def test
|
347
|
+
add_notice("TESTING CONNECTION...")
|
348
|
+
success = false
|
349
|
+
# Verification SOP Class:
|
350
|
+
@abstract_syntaxes = [VERIFICATION_SOP]
|
351
|
+
# Open a DICOM link:
|
352
|
+
establish_association
|
353
|
+
if @association
|
354
|
+
if @request_approved
|
355
|
+
success = true
|
356
|
+
end
|
357
|
+
# Close the DICOM link:
|
358
|
+
establish_release
|
359
|
+
end
|
360
|
+
if success
|
361
|
+
add_notice("TEST SUCCSESFUL!")
|
362
|
+
else
|
363
|
+
add_error("TEST FAILED!")
|
364
|
+
end
|
365
|
+
return success
|
366
|
+
end
|
367
|
+
|
368
|
+
|
369
|
+
# Following methods are private:
|
370
|
+
private
|
371
|
+
|
372
|
+
|
373
|
+
# Adds a warning or error message to the instance array holding messages,
|
374
|
+
# and prints the information to the screen if verbose is set.
|
375
|
+
#
|
376
|
+
# === Parameters
|
377
|
+
#
|
378
|
+
# * <tt>error</tt> -- A single error message or an array of error messages.
|
379
|
+
#
|
380
|
+
def add_error(error)
|
381
|
+
puts error if @verbose
|
382
|
+
@errors << error
|
383
|
+
end
|
384
|
+
|
385
|
+
# Adds a notice (information regarding progress or successful communications) to the instance array,
|
386
|
+
# and prints the information to the screen if verbose is set.
|
387
|
+
#
|
388
|
+
# === Parameters
|
389
|
+
#
|
390
|
+
# * <tt>notice</tt> -- A single status message or an array of status messages.
|
391
|
+
#
|
392
|
+
def add_notice(notice)
|
393
|
+
puts notice if @verbose
|
394
|
+
@notices << notice
|
395
|
+
end
|
396
|
+
|
397
|
+
# Opens a TCP session with the server, and handles the association request as well as the response.
|
398
|
+
#
|
399
|
+
def establish_association
|
400
|
+
# Reset some variables:
|
401
|
+
@association = false
|
402
|
+
@request_approved = false
|
403
|
+
# Initiate the association:
|
404
|
+
@link.build_association_request(@application_context_uid, @abstract_syntaxes, @transfer_syntax, @user_information)
|
405
|
+
@link.start_session(@host_ip, @port)
|
406
|
+
@link.transmit
|
407
|
+
info = @link.receive_multiple_transmissions.first
|
408
|
+
# Interpret the results:
|
409
|
+
if info[:valid]
|
410
|
+
if info[:pdu] == PDU_ASSOCIATION_ACCEPT
|
411
|
+
# Values of importance are extracted and put into instance variables:
|
412
|
+
@association = true
|
413
|
+
@max_pdu_length = info[:max_pdu_length]
|
414
|
+
add_notice("Association successfully negotiated with host #{@host_ae} (#{@host_ip}).")
|
415
|
+
# Check if all our presentation contexts was accepted by the host:
|
416
|
+
process_presentation_context_response(info[:pc])
|
417
|
+
else
|
418
|
+
add_error("Association was denied from host #{@host_ae} (#{@host_ip})!")
|
419
|
+
end
|
420
|
+
end
|
421
|
+
end
|
422
|
+
|
423
|
+
# Handles the release request along with the response, as well as closing the TCP connection.
|
424
|
+
#
|
425
|
+
def establish_release
|
426
|
+
@release = false
|
427
|
+
if @abort
|
428
|
+
@link.stop_session
|
429
|
+
add_notice("Association has been closed. (#{@host_ae}, #{@host_ip})")
|
430
|
+
else
|
431
|
+
unless @link.session.closed?
|
432
|
+
@link.build_release_request
|
433
|
+
@link.transmit
|
434
|
+
info = @link.receive_single_transmission.first
|
435
|
+
@link.stop_session
|
436
|
+
if info[:pdu] == PDU_RELEASE_RESPONSE
|
437
|
+
add_notice("Association released properly from host #{@host_ae}.")
|
438
|
+
else
|
439
|
+
add_error("Association released from host #{@host_ae}, but a release response was not registered.")
|
440
|
+
end
|
441
|
+
else
|
442
|
+
add_error("Connection was closed by the host (for some unknown reason) before the association could be released properly.")
|
443
|
+
end
|
444
|
+
end
|
445
|
+
@abort = false
|
446
|
+
end
|
447
|
+
|
448
|
+
# Loads one or more DICOM files.
|
449
|
+
# Returns an array of DObject instances, an array of unique abstract syntaxes found among the files, a status boolean and a message string.
|
450
|
+
#
|
451
|
+
# === Parameters
|
452
|
+
#
|
453
|
+
# * <tt>files</tt> -- A single file path or an array of paths, or a DObject or an array of DObject instances.
|
454
|
+
#
|
455
|
+
def load_files(files)
|
456
|
+
status = true
|
457
|
+
message = ""
|
458
|
+
objects = Array.new
|
459
|
+
abstracts = Array.new
|
460
|
+
files = [files] unless files.is_a?(Array)
|
461
|
+
files.each do |file|
|
462
|
+
if file.is_a?(String)
|
463
|
+
obj = DObject.new(file, :verbose => false)
|
464
|
+
if obj.read_success
|
465
|
+
# Load the DICOM object and its abstract syntax:
|
466
|
+
objects << obj
|
467
|
+
abstracts << obj.value("0008,0016")
|
468
|
+
else
|
469
|
+
status = false
|
470
|
+
message = "Failed to successfully parse a DObject for the following string: #{file}"
|
471
|
+
end
|
472
|
+
elsif file.is_a?(DObject)
|
473
|
+
# Load the DICOM object and its abstract syntax:
|
474
|
+
objects << obj
|
475
|
+
abstracts << obj.value("0008,0016")
|
476
|
+
else
|
477
|
+
status = false
|
478
|
+
message = "Array contains invalid object #{file}."
|
479
|
+
end
|
480
|
+
end
|
481
|
+
return objects, abstracts.uniq, status, message
|
482
|
+
end
|
483
|
+
|
484
|
+
# Handles the communication involved in a DICOM C-ECHO.
|
485
|
+
# Build the necessary strings and send the command and data element that makes up the echo request.
|
486
|
+
# Listens for and interpretes the incoming echo response.
|
487
|
+
#
|
488
|
+
def perform_echo
|
489
|
+
# Open a DICOM link:
|
490
|
+
establish_association
|
491
|
+
if @association
|
492
|
+
if @request_approved
|
493
|
+
# Continue with our echo, since the request was accepted.
|
494
|
+
# Set the query command elements array:
|
495
|
+
set_command_fragment_echo
|
496
|
+
presentation_context_id = @approved_syntaxes.to_a.first[1][0] # ID of first (and only) syntax in this Hash.
|
497
|
+
@link.build_command_fragment(PDU_DATA, presentation_context_id, COMMAND_LAST_FRAGMENT, @command_elements)
|
498
|
+
@link.transmit
|
499
|
+
# Listen for incoming responses and interpret them individually, until we have received the last command fragment.
|
500
|
+
segments = @link.receive_multiple_transmissions
|
501
|
+
process_returned_data(segments)
|
502
|
+
# Print stuff to screen?
|
503
|
+
end
|
504
|
+
# Close the DICOM link:
|
505
|
+
establish_release
|
506
|
+
end
|
507
|
+
end
|
508
|
+
|
509
|
+
# Handles the communication involved in a DICOM query (C-FIND).
|
510
|
+
# Build the necessary strings and send the command and data element that makes up the query.
|
511
|
+
# Listens for and interpretes the incoming query responses.
|
512
|
+
#
|
513
|
+
def perform_find
|
514
|
+
# Open a DICOM link:
|
515
|
+
establish_association
|
516
|
+
if @association
|
517
|
+
if @request_approved
|
518
|
+
# Continue with our query, since the request was accepted.
|
519
|
+
# Set the query command elements array:
|
520
|
+
set_command_fragment_find
|
521
|
+
presentation_context_id = @approved_syntaxes.to_a.first[1][0] # ID of first (and only) syntax in this Hash.
|
522
|
+
@link.build_command_fragment(PDU_DATA, presentation_context_id, COMMAND_LAST_FRAGMENT, @command_elements)
|
523
|
+
@link.transmit
|
524
|
+
@link.build_data_fragment(@data_elements, presentation_context_id)
|
525
|
+
@link.transmit
|
526
|
+
# A query response will typically be sent in multiple, separate packets.
|
527
|
+
# Listen for incoming responses and interpret them individually, until we have received the last command fragment.
|
528
|
+
segments = @link.receive_multiple_transmissions
|
529
|
+
process_returned_data(segments)
|
530
|
+
end
|
531
|
+
# Close the DICOM link:
|
532
|
+
establish_release
|
533
|
+
end
|
534
|
+
end
|
535
|
+
|
536
|
+
# Handles the communication involved in a DICOM C-GET.
|
537
|
+
# Builds and sends command & data fragment, then receives the incoming file data.
|
538
|
+
#
|
539
|
+
#--
|
540
|
+
# FIXME: This method has never actually been tested, since it is difficult to find a host that accepts a c-get-rq.
|
541
|
+
#
|
542
|
+
def perform_get(path)
|
543
|
+
# Open a DICOM link:
|
544
|
+
establish_association
|
545
|
+
if @association
|
546
|
+
if @request_approved
|
547
|
+
# Continue with our operation, since the request was accepted.
|
548
|
+
presentation_context_id = @approved_syntaxes.to_a.first[1][0] # ID of first (and only) syntax in this Hash.
|
549
|
+
@link.build_command_fragment(PDU_DATA, presentation_context_id, COMMAND_LAST_FRAGMENT, @command_elements)
|
550
|
+
@link.transmit
|
551
|
+
@link.build_data_fragment(@data_elements, presentation_context_id)
|
552
|
+
@link.transmit
|
553
|
+
# Listen for incoming file data:
|
554
|
+
success = @link.handle_incoming_data(path)
|
555
|
+
if success
|
556
|
+
# Send confirmation response:
|
557
|
+
@link.handle_response
|
558
|
+
end
|
559
|
+
end
|
560
|
+
# Close the DICOM link:
|
561
|
+
establish_release
|
562
|
+
end
|
563
|
+
end
|
564
|
+
|
565
|
+
# Handles the communication involved in DICOM C-MOVE.
|
566
|
+
# Build the necessary strings and sends the command element that makes up the move request.
|
567
|
+
# Listens for and interpretes the incoming move response.
|
568
|
+
#
|
569
|
+
def perform_move
|
570
|
+
# Open a DICOM link:
|
571
|
+
establish_association
|
572
|
+
if @association
|
573
|
+
if @request_approved
|
574
|
+
# Continue with our operation, since the request was accepted.
|
575
|
+
presentation_context_id = @approved_syntaxes.to_a.first[1][0] # ID of first (and only) syntax in this Hash.
|
576
|
+
@link.build_command_fragment(PDU_DATA, presentation_context_id, COMMAND_LAST_FRAGMENT, @command_elements)
|
577
|
+
@link.transmit
|
578
|
+
@link.build_data_fragment(@data_elements, presentation_context_id)
|
579
|
+
@link.transmit
|
580
|
+
# Receive confirmation response:
|
581
|
+
segments = @link.receive_single_transmission
|
582
|
+
process_returned_data(segments)
|
583
|
+
end
|
584
|
+
# Close the DICOM link:
|
585
|
+
establish_release
|
586
|
+
end
|
587
|
+
end
|
588
|
+
|
589
|
+
# Handles the communication involved in DICOM C-STORE.
|
590
|
+
# For each file, builds and sends command fragment, then builds and sends the data fragments that
|
591
|
+
# conveys the information from the selected DICOM file.
|
592
|
+
#
|
593
|
+
def perform_send(objects)
|
594
|
+
objects.each_with_index do |obj, index|
|
595
|
+
# Gather necessary information from the object (SOP Class & Instance UID):
|
596
|
+
modality = obj.value("0008,0016")
|
597
|
+
instance = obj.value("0008,0018")
|
598
|
+
if modality and instance
|
599
|
+
# Only send the image if its modality has been accepted by the receiver:
|
600
|
+
if @approved_syntaxes[modality]
|
601
|
+
# Set the command array to be used:
|
602
|
+
message_id = index + 1
|
603
|
+
set_command_fragment_store(modality, instance, message_id)
|
604
|
+
# Find context id and transfer syntax:
|
605
|
+
presentation_context_id = @approved_syntaxes[modality][0]
|
606
|
+
selected_transfer_syntax = @approved_syntaxes[modality][1]
|
607
|
+
# Encode our DICOM object to a binary string which is split up in pieces, sufficiently small to fit within the specified maximum pdu length:
|
608
|
+
# Set the transfer syntax of the DICOM object equal to the one accepted by the SCP:
|
609
|
+
obj.transfer_syntax = selected_transfer_syntax
|
610
|
+
max_header_length = 14
|
611
|
+
data_packages = obj.encode_segments(@max_pdu_length - max_header_length)
|
612
|
+
@link.build_command_fragment(PDU_DATA, presentation_context_id, COMMAND_LAST_FRAGMENT, @command_elements)
|
613
|
+
@link.transmit
|
614
|
+
# Transmit all but the last data strings:
|
615
|
+
last_data_package = data_packages.pop
|
616
|
+
data_packages.each do |data_package|
|
617
|
+
@link.build_storage_fragment(PDU_DATA, presentation_context_id, DATA_MORE_FRAGMENTS, data_package)
|
618
|
+
@link.transmit
|
619
|
+
end
|
620
|
+
# Transmit the last data string:
|
621
|
+
@link.build_storage_fragment(PDU_DATA, presentation_context_id, DATA_LAST_FRAGMENT, last_data_package)
|
622
|
+
@link.transmit
|
623
|
+
# Receive confirmation response:
|
624
|
+
segments = @link.receive_single_transmission
|
625
|
+
process_returned_data(segments)
|
626
|
+
end
|
627
|
+
else
|
628
|
+
add_error("Error: Unable to extract SOP Class UID and/or SOP Instance UID for this DICOM object. File will not be sent to its destination.")
|
629
|
+
end
|
630
|
+
end
|
631
|
+
end
|
632
|
+
|
633
|
+
# Processes the presentation contexts that are received in the association response
|
634
|
+
# to extract the transfer syntaxes which have been accepted for the various abstract syntaxes.
|
635
|
+
#
|
636
|
+
# === Parameters
|
637
|
+
#
|
638
|
+
# * <tt>presentation_contexts</tt> -- An array where each index contains a presentation context hash.
|
639
|
+
#
|
640
|
+
def process_presentation_context_response(presentation_contexts)
|
641
|
+
# Storing approved syntaxes in an Hash with the syntax as key and the value being an array with presentation context ID and the transfer syntax chosen by the SCP.
|
642
|
+
@approved_syntaxes = Hash.new
|
643
|
+
rejected = Hash.new
|
644
|
+
# Reset the presentation context instance variable:
|
645
|
+
@link.presentation_contexts = Hash.new
|
646
|
+
presentation_contexts.each do |pc|
|
647
|
+
# Determine what abstract syntax this particular presentation context's id corresponds to:
|
648
|
+
id = pc[:presentation_context_id]
|
649
|
+
raise "Error! Even presentation context ID received in the association response. This is not allowed according to the DICOM standard!" if id[0] == 0 # If even number.
|
650
|
+
index = (id-1)/2
|
651
|
+
abstract_syntax = @abstract_syntaxes[index]
|
652
|
+
if pc[:result] == 0
|
653
|
+
@approved_syntaxes[abstract_syntax] = [id, pc[:transfer_syntax]]
|
654
|
+
@link.presentation_contexts[id] = pc[:transfer_syntax]
|
655
|
+
else
|
656
|
+
rejected[abstract_syntax] = [id, pc[:transfer_syntax]]
|
657
|
+
end
|
658
|
+
end
|
659
|
+
if rejected.length == 0
|
660
|
+
@request_approved = true
|
661
|
+
if @approved_syntaxes.length == 1
|
662
|
+
add_notice("The presentation context was accepted by host #{@host_ae}.")
|
663
|
+
else
|
664
|
+
add_notice("All #{@approved_syntaxes.length} presentation contexts were accepted by host #{@host_ae} (#{@host_ip}).")
|
665
|
+
end
|
666
|
+
else
|
667
|
+
@request_approved = false
|
668
|
+
add_error("One or more of your presentation contexts were denied by host #{@host_ae}!")
|
669
|
+
@approved_syntaxes.each_key {|a| add_error("APPROVED: #{LIBRARY.get_syntax_description(a)}")}
|
670
|
+
rejected.each_key {|r| add_error("REJECTED: #{LIBRARY.get_syntax_description(r)}")}
|
671
|
+
end
|
672
|
+
end
|
673
|
+
|
674
|
+
# Processes the array of information hashes that was returned from the interaction with the SCP
|
675
|
+
# and transfers it to the instance variables where command and data results are stored.
|
676
|
+
#
|
677
|
+
def process_returned_data(segments)
|
678
|
+
# Reset command results arrays:
|
679
|
+
@command_results = Array.new
|
680
|
+
@data_results = Array.new
|
681
|
+
# Try to extract data:
|
682
|
+
segments.each do |info|
|
683
|
+
if info[:valid]
|
684
|
+
# Determine if it is command or data:
|
685
|
+
if info[:presentation_context_flag] == COMMAND_LAST_FRAGMENT
|
686
|
+
@command_results << info[:results]
|
687
|
+
elsif info[:presentation_context_flag] == DATA_LAST_FRAGMENT
|
688
|
+
@data_results << info[:results]
|
689
|
+
end
|
690
|
+
end
|
691
|
+
end
|
692
|
+
end
|
693
|
+
|
694
|
+
# Sets the command elements used in a C-ECHO-RQ.
|
695
|
+
#
|
696
|
+
def set_command_fragment_echo
|
697
|
+
@command_elements = [
|
698
|
+
["0000,0002", "UI", @abstract_syntaxes.first], # Affected SOP Class UID
|
699
|
+
["0000,0100", "US", C_ECHO_RQ],
|
700
|
+
["0000,0110", "US", DEFAULT_MESSAGE_ID],
|
701
|
+
["0000,0800", "US", NO_DATA_SET_PRESENT]
|
702
|
+
]
|
703
|
+
end
|
704
|
+
|
705
|
+
# Sets the command elements used in a C-FIND-RQ.
|
706
|
+
#
|
707
|
+
# === Notes
|
708
|
+
#
|
709
|
+
# * This setup is used for all types of queries.
|
710
|
+
#
|
711
|
+
def set_command_fragment_find
|
712
|
+
@command_elements = [
|
713
|
+
["0000,0002", "UI", @abstract_syntaxes.first], # Affected SOP Class UID
|
714
|
+
["0000,0100", "US", C_FIND_RQ],
|
715
|
+
["0000,0110", "US", DEFAULT_MESSAGE_ID],
|
716
|
+
["0000,0700", "US", 0], # Priority: 0: medium
|
717
|
+
["0000,0800", "US", DATA_SET_PRESENT]
|
718
|
+
]
|
719
|
+
end
|
720
|
+
|
721
|
+
# Sets the command elements used in a C-GET-RQ.
|
722
|
+
#
|
723
|
+
def set_command_fragment_get
|
724
|
+
@command_elements = [
|
725
|
+
["0000,0002", "UI", @abstract_syntaxes.first], # Affected SOP Class UID
|
726
|
+
["0000,0100", "US", C_GET_RQ],
|
727
|
+
["0000,0600", "AE", @ae], # Destination is ourselves
|
728
|
+
["0000,0700", "US", 0], # Priority: 0: medium
|
729
|
+
["0000,0800", "US", DATA_SET_PRESENT]
|
730
|
+
]
|
731
|
+
end
|
732
|
+
|
733
|
+
# Sets the command elements used in a C-MOVE-RQ.
|
734
|
+
#
|
735
|
+
def set_command_fragment_move(destination)
|
736
|
+
@command_elements = [
|
737
|
+
["0000,0002", "UI", @abstract_syntaxes.first], # Affected SOP Class UID
|
738
|
+
["0000,0100", "US", C_MOVE_RQ],
|
739
|
+
["0000,0110", "US", DEFAULT_MESSAGE_ID],
|
740
|
+
["0000,0600", "AE", destination],
|
741
|
+
["0000,0700", "US", 0], # Priority: 0: medium
|
742
|
+
["0000,0800", "US", DATA_SET_PRESENT]
|
743
|
+
]
|
744
|
+
end
|
745
|
+
|
746
|
+
# Sets the command elements used in a C-STORE-RQ.
|
747
|
+
#
|
748
|
+
def set_command_fragment_store(modality, instance, message_id)
|
749
|
+
@command_elements = [
|
750
|
+
["0000,0002", "UI", modality], # Affected SOP Class UID
|
751
|
+
["0000,0100", "US", C_STORE_RQ],
|
752
|
+
["0000,0110", "US", message_id],
|
753
|
+
["0000,0700", "US", 0], # Priority: 0: medium
|
754
|
+
["0000,0800", "US", DATA_SET_PRESENT],
|
755
|
+
["0000,1000", "UI", instance] # Affected SOP Instance UID
|
756
|
+
]
|
757
|
+
end
|
758
|
+
|
759
|
+
# Sets the data elements used in a query for the images of a particular series.
|
760
|
+
#
|
761
|
+
def set_data_fragment_find_images
|
762
|
+
@data_elements = [
|
763
|
+
["0008,0018", ""], # SOP Instance UID
|
764
|
+
["0008,0052", "IMAGE"], # Query/Retrieve Level: "IMAGE"
|
765
|
+
["0020,000D", ""], # Study Instance UID
|
766
|
+
["0020,000E", ""], # Series Instance UID
|
767
|
+
["0020,0013", ""] # Instance Number
|
768
|
+
]
|
769
|
+
end
|
770
|
+
|
771
|
+
# Sets the data elements used in a query for patients.
|
772
|
+
#
|
773
|
+
def set_data_fragment_find_patients
|
774
|
+
@data_elements = [
|
775
|
+
["0008,0052", "PATIENT"], # Query/Retrieve Level: "PATIENT"
|
776
|
+
["0010,0010", ""], # Patient's Name
|
777
|
+
["0010,0020", ""], # Patient ID
|
778
|
+
["0010,0030", ""], # Patient's Birth Date
|
779
|
+
["0010,0040", ""] # Patient's Sex
|
780
|
+
]
|
781
|
+
end
|
782
|
+
|
783
|
+
# Sets the data elements used in a query for the series of a particular study.
|
784
|
+
#
|
785
|
+
def set_data_fragment_find_series
|
786
|
+
@data_elements = [
|
787
|
+
["0008,0052", "SERIES"], # Query/Retrieve Level: "SERIES"
|
788
|
+
["0008,0060", ""], # Modality
|
789
|
+
["0008,103E", ""], # Series Description
|
790
|
+
["0020,000D", ""], # Study Instance UID
|
791
|
+
["0020,000E", ""], # Series Instance UID
|
792
|
+
["0020,0011", ""] # Series Number
|
793
|
+
]
|
794
|
+
end
|
795
|
+
|
796
|
+
# Sets the data elements used in a query for studies.
|
797
|
+
#
|
798
|
+
def set_data_fragment_find_studies
|
799
|
+
@data_elements = [
|
800
|
+
["0008,0020", ""], # Study Date
|
801
|
+
["0008,0030", ""], # Study Time
|
802
|
+
["0008,0050", ""], # Accession Number
|
803
|
+
["0008,0052", "STUDY"], # Query/Retrieve Level: "STUDY"
|
804
|
+
["0008,0090", ""], # Referring Physician's Name
|
805
|
+
["0008,1030", ""], # Study Description
|
806
|
+
["0008,1060", ""], # Name of Physician(s) Reading Study
|
807
|
+
["0010,0010", ""], # Patient's Name
|
808
|
+
["0010,0020", ""], # Patient ID
|
809
|
+
["0010,0030", ""], # Patient's Birth Date
|
810
|
+
["0010,0040", ""], # Patient's Sex
|
811
|
+
["0020,000D", ""], # Study Instance UID
|
812
|
+
["0020,0010", ""] # Study ID
|
813
|
+
]
|
814
|
+
end
|
815
|
+
|
816
|
+
# Sets the data elements used for an image C-GET-RQ.
|
817
|
+
#
|
818
|
+
def set_data_fragment_get_image
|
819
|
+
@data_elements = [
|
820
|
+
["0008,0018", ""], # SOP Instance UID
|
821
|
+
["0008,0052", "IMAGE"], # Query/Retrieve Level: "IMAGE"
|
822
|
+
["0020,000D", ""], # Study Instance UID
|
823
|
+
["0020,000E", ""] # Series Instance UID
|
824
|
+
]
|
825
|
+
end
|
826
|
+
|
827
|
+
# Sets the data elements used for an image C-MOVE-RQ.
|
828
|
+
#
|
829
|
+
def set_data_fragment_move_image
|
830
|
+
@data_elements = [
|
831
|
+
["0008,0018", ""], # SOP Instance UID
|
832
|
+
["0008,0052", "IMAGE"], # Query/Retrieve Level: "IMAGE"
|
833
|
+
["0020,000D", ""], # Study Instance UID
|
834
|
+
["0020,000E", ""] # Series Instance UID
|
835
|
+
]
|
836
|
+
end
|
837
|
+
|
838
|
+
# Sets the data elements used in a study C-MOVE-RQ.
|
839
|
+
#
|
840
|
+
def set_data_fragment_move_study
|
841
|
+
@data_elements = [
|
842
|
+
["0008,0052", "STUDY"], # Query/Retrieve Level: "STUDY"
|
843
|
+
["0010,0020", ""], # Patient ID
|
844
|
+
["0020,000D", ""] # Study Instance UID
|
845
|
+
]
|
846
|
+
end
|
847
|
+
|
848
|
+
# Transfers the user query options to the @data_elements instance array.
|
849
|
+
#
|
850
|
+
# === Restrictions
|
851
|
+
#
|
852
|
+
# * Only tag & value pairs for tags which are predefined for the specific query type will be stored!
|
853
|
+
#
|
854
|
+
def set_data_options(options)
|
855
|
+
options.each_pair do |key, value|
|
856
|
+
tags = @data_elements.transpose[0]
|
857
|
+
i = tags.index(key)
|
858
|
+
if i
|
859
|
+
@data_elements[i][1] = value
|
860
|
+
end
|
861
|
+
end
|
862
|
+
end
|
863
|
+
|
864
|
+
# Sets the default values for proposed transfer syntaxes.
|
865
|
+
#
|
866
|
+
def set_default_values
|
867
|
+
# DICOM Application Context Name (unknown if this will vary or is always the same):
|
868
|
+
@application_context_uid = APPLICATION_CONTEXT
|
869
|
+
# Transfer syntax string array (preferred syntax appearing first):
|
870
|
+
@transfer_syntax = [IMPLICIT_LITTLE_ENDIAN, EXPLICIT_LITTLE_ENDIAN, EXPLICIT_BIG_ENDIAN]
|
871
|
+
end
|
872
|
+
|
873
|
+
# Sets the @user_information items instance array.
|
874
|
+
#
|
875
|
+
# === Notes
|
876
|
+
#
|
877
|
+
# Each user information item is a three element array consisting of: item type code, VR & value.
|
878
|
+
#
|
879
|
+
def set_user_information_array
|
880
|
+
@user_information = [
|
881
|
+
[ITEM_MAX_LENGTH, "UL", @max_package_size],
|
882
|
+
[ITEM_IMPLEMENTATION_UID, "STR", UID],
|
883
|
+
[ITEM_IMPLEMENTATION_VERSION, "STR", NAME]
|
884
|
+
]
|
885
|
+
end
|
886
|
+
|
887
|
+
end
|
888
|
+
end
|