dependabot-nuget 0.251.0 → 0.253.0
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- checksums.yaml +4 -4
- data/helpers/lib/NuGetUpdater/Directory.Common.props +1 -0
- data/helpers/lib/NuGetUpdater/Directory.Packages.props +26 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli/Commands/DiscoverCommand.cs +35 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli/NuGetUpdater.Cli.csproj +1 -1
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli/Program.cs +4 -7
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli.Test/EntryPointTests.Discover.cs +251 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli.Test/EntryPointTests.Update.cs +27 -9
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Cli.Test/NuGetUpdater.Cli.Test.csproj +3 -3
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Dependency.cs +56 -1
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/DependencyType.cs +1 -1
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/DirectoryPackagesPropsDiscovery.cs +69 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/DirectoryPackagesPropsDiscoveryResult.cs +11 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/DiscoveryWorker.cs +217 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/DotNetToolsJsonDiscovery.cs +30 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/DotNetToolsJsonDiscoveryResult.cs +10 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/GlobalJsonDiscovery.cs +30 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/GlobalJsonDiscoveryResult.cs +10 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/IDiscoveryResult.cs +14 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/PackagesConfigDiscovery.cs +29 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/PackagesConfigDiscoveryResult.cs +10 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/ProjectDiscoveryResult.cs +13 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/SdkProjectDiscovery.cs +128 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Discover/WorkspaceDiscoveryResult.cs +13 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/EvaluationResult.cs +8 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/EvaluationResultType.cs +9 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/BuildFile.cs +6 -8
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/DotNetToolsJsonBuildFile.cs +4 -7
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/GlobalJsonBuildFile.cs +24 -17
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/JsonBuildFile.cs +2 -2
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/PackagesConfigBuildFile.cs +8 -13
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/ProjectBuildFile.cs +100 -19
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Files/XmlBuildFile.cs +2 -2
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/NuGetUpdater.Core.csproj +6 -6
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Property.cs +6 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Updater/DotNetToolsJsonUpdater.cs +23 -36
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Updater/GlobalJsonUpdater.cs +5 -10
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Updater/SdkPackageUpdater.cs +59 -26
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Updater/UpdaterWorker.cs +5 -20
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/HashSetExtensions.cs +14 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/ImmutableArrayExtensions.cs +18 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/JsonHelper.cs +0 -1
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/MSBuildHelper.cs +281 -140
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/NuGetHelper.cs +27 -4
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core/Utilities/PathHelper.cs +18 -13
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTestBase.cs +135 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTests.DotNetToolsJson.cs +91 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTests.GlobalJson.cs +71 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTests.PackagesConfig.cs +67 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTests.Project.cs +405 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/DiscoveryWorkerTests.cs +306 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Discover/ExpectedDiscoveryResults.cs +36 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Files/DotNetToolsJsonBuildFileTests.cs +1 -2
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Files/GlobalJsonBuildFileTests.cs +2 -3
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Files/PackagesConfigBuildFileTests.cs +4 -6
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Files/ProjectBuildFileTests.cs +6 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/NuGetUpdater.Core.Test.csproj +4 -3
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/TemporaryDirectory.cs +38 -6
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/TestBase.cs +10 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/PackagesConfigUpdaterTests.cs +1 -8
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTestBase.cs +13 -41
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.DirsProj.cs +0 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.DotNetTools.cs +0 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.GlobalJson.cs +0 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.Mixed.cs +0 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.PackagesConfig.cs +0 -5
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Update/UpdateWorkerTests.Sdk.cs +30 -23
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Utilities/AssertEx.cs +272 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Utilities/DiffUtil.cs +266 -0
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Utilities/MSBuildHelperTests.cs +239 -161
- data/helpers/lib/NuGetUpdater/NuGetUpdater.Core.Test/Utilities/SdkPackageUpdaterHelperTests.cs +7 -11
- data/lib/dependabot/nuget/discovery/dependency_details.rb +95 -0
- data/lib/dependabot/nuget/discovery/dependency_file_discovery.rb +126 -0
- data/lib/dependabot/nuget/discovery/directory_packages_props_discovery.rb +43 -0
- data/lib/dependabot/nuget/discovery/discovery_json_reader.rb +83 -0
- data/lib/dependabot/nuget/discovery/evaluation_details.rb +63 -0
- data/lib/dependabot/nuget/discovery/project_discovery.rb +71 -0
- data/lib/dependabot/nuget/discovery/property_details.rb +43 -0
- data/lib/dependabot/nuget/discovery/workspace_discovery.rb +66 -0
- data/lib/dependabot/nuget/file_parser.rb +19 -128
- data/lib/dependabot/nuget/file_updater.rb +28 -60
- data/lib/dependabot/nuget/native_helpers.rb +55 -0
- data/lib/dependabot/nuget/update_checker/compatibility_checker.rb +3 -8
- data/lib/dependabot/nuget/update_checker/dependency_finder.rb +1 -0
- data/lib/dependabot/nuget/update_checker/property_updater.rb +1 -0
- data/lib/dependabot/nuget/update_checker/tfm_finder.rb +17 -152
- data/lib/dependabot/nuget/update_checker/version_finder.rb +1 -6
- data/lib/dependabot/nuget/update_checker.rb +4 -1
- metadata +44 -25
- data/lib/dependabot/nuget/file_parser/dotnet_tools_json_parser.rb +0 -71
- data/lib/dependabot/nuget/file_parser/global_json_parser.rb +0 -68
- data/lib/dependabot/nuget/file_parser/packages_config_parser.rb +0 -92
- data/lib/dependabot/nuget/file_parser/project_file_parser.rb +0 -620
- data/lib/dependabot/nuget/file_parser/property_value_finder.rb +0 -225
- data/lib/dependabot/nuget/file_updater/property_value_updater.rb +0 -81
@@ -8,11 +8,6 @@ public partial class UpdateWorkerTests
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{
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public class Sdk : UpdateWorkerTestBase
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public Sdk()
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{
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MSBuildHelper.RegisterMSBuild();
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}
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[Theory]
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[InlineData("net472")]
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[InlineData("netstandard2.0")]
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]);
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}
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[Fact]
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public async Task NoChange_WhenPackageHasVersionConstraint()
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{
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// Dependency package has version constraint
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await TestNoChangeforProject("AWSSDK.Core", "3.3.21.19", "3.7.300.20",
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projectContents: $"""
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<Project Sdk="Microsoft.NET.Sdk">
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<PropertyGroup>
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<TargetFramework>netstandard2.0</TargetFramework>
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</PropertyGroup>
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<ItemGroup>
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<PackageReference Include="AWSSDK.S3" Version="3.3.17.3" />
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<PackageReference Include="AWSSDK.Core" Version="3.3.21.19" />
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</ItemGroup>
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</Project>
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""");
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}
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[Fact]
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public async Task UpdateVersionAttribute_InProjectFile_ForPackageReferenceInclude_Windows()
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"""
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[Fact]
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public async Task UpdatingPackageAlsoUpdatesAnythingWithADependencyOnTheUpdatedPackage()
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{
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// updating SpecFlow from 3.3.30 requires that SpecFlow.Tools.MsBuild.Generation also be updated
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await TestUpdateForProject("SpecFlow", "3.3.30", "3.4.3",
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projectContents: """
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<Project Sdk="Microsoft.NET.Sdk">
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<PropertyGroup>
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<TargetFramework>netstandard2.0</TargetFramework>
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</PropertyGroup>
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<ItemGroup>
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<PackageReference Include="SpecFlow" Version="3.3.30" />
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<PackageReference Include="SpecFlow.Tools.MsBuild.Generation" Version="3.3.30" />
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</ItemGroup>
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</Project>
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""",
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expectedProjectContents: """
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<Project Sdk="Microsoft.NET.Sdk">
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<PropertyGroup>
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<TargetFramework>netstandard2.0</TargetFramework>
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</PropertyGroup>
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<ItemGroup>
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<PackageReference Include="SpecFlow" Version="3.4.3" />
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<PackageReference Include="SpecFlow.Tools.MsBuild.Generation" Version="3.4.3" />
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</ItemGroup>
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</Project>
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"""
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);
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}
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using System.Collections;
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using System.Collections.Immutable;
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using System.Reflection;
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using System.Text;
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using Xunit;
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namespace NuGetUpdater.Core.Test.Utilities;
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/// <summary>
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/// Assert style type to deal with the lack of features in xUnit's Assert type
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/// </summary>
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public static class AssertEx
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{
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public static void Equal<T>(
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ImmutableArray<T>? expected,
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ImmutableArray<T>? actual,
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IEqualityComparer<T>? comparer = null,
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string? message = null)
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{
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if (actual is null || actual.Value.IsDefault)
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Assert.True(expected is null || expected.Value.IsDefault, message);
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else
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Equal(expected, (IEnumerable<T>)actual.Value, comparer, message);
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public static void Equal<T>(
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ImmutableArray<T> actual,
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IEqualityComparer<T>? comparer = null,
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string? message = null)
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Assert.True(expected.IsDefault, message);
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Equal(expected, (IEnumerable<T>)actual, comparer, message);
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public static void Equal<T>(
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ImmutableArray<T>? expected,
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IEnumerable<T>? actual,
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IEqualityComparer<T>? comparer = null,
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string? message = null)
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Equal((IEnumerable<T>?)expected, actual, comparer, message);
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public static void Equal<T>(
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IEqualityComparer<T>? comparer = null,
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string? message = null)
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Equal(expected, (IEnumerable<T>)actual, comparer, message);
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public static void Equal<T>(
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IEnumerable<T>? expected,
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IEnumerable<T>? actual,
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IEqualityComparer<T>? comparer = null,
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string? message = null)
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Assert.True(false, GetAssertMessage(expected, actual, comparer, message));
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private static bool SequenceEqual<T>(
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IEnumerable<T> actual,
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IEqualityComparer<T>? comparer = null)
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{
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return true;
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while (true)
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return false;
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{
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break;
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var value1 = enumerator1.Current;
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var value2 = enumerator2.Current;
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var areEqual = comparer != null
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? comparer.Equals(value1, value2)
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: AssertEqualityComparer<T>.Equals(value1, value2);
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if (!areEqual)
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{
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return false;
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}
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}
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return true;
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}
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public static string GetAssertMessage<T>(
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IEnumerable<T> expected,
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IEnumerable<T> actual,
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IEqualityComparer<T>? comparer = null,
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string? prefix = null)
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{
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Func<T, string> itemInspector = typeof(T) == typeof(byte)
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? b => $"0x{b:X2}"
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: new Func<T, string>(obj => obj?.ToString() ?? "<null>");
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var itemSeparator = typeof(T) == typeof(byte)
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? ", "
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: "," + Environment.NewLine;
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var expectedString = string.Join(itemSeparator, expected.Take(10).Select(itemInspector));
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var actualString = string.Join(itemSeparator, actual.Select(itemInspector));
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var message = new StringBuilder();
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if (!string.IsNullOrEmpty(prefix))
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{
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message.AppendLine(prefix);
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message.AppendLine();
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}
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message.AppendLine("Expected:");
|
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|
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message.AppendLine(expectedString);
|
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|
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if (expected.Count() > 10)
|
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|
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{
|
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|
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message.AppendLine("... truncated ...");
|
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}
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message.AppendLine("Actual:");
|
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|
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message.AppendLine(actualString);
|
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|
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message.AppendLine("Differences:");
|
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message.AppendLine(DiffUtil.DiffReport(expected, actual, itemSeparator, comparer, itemInspector));
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return message.ToString();
|
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}
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+
|
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private class AssertEqualityComparer<T> : IEqualityComparer<T>
|
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+
{
|
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+
public static readonly IEqualityComparer<T> Instance = new AssertEqualityComparer<T>();
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+
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private static bool CanBeNull()
|
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{
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var type = typeof(T);
|
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return !type.GetTypeInfo().IsValueType ||
|
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|
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(type.GetTypeInfo().IsGenericType && type.GetGenericTypeDefinition() == typeof(Nullable<>));
|
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}
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+
|
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public static bool IsNull(T @object)
|
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|
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{
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if (!CanBeNull())
|
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{
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return false;
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}
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return object.Equals(@object, default(T));
|
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}
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|
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|
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public static bool Equals(T left, T right)
|
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|
+
{
|
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|
+
return Instance.Equals(left, right);
|
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+
}
|
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+
|
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|
+
bool IEqualityComparer<T>.Equals(T? x, T? y)
|
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|
+
{
|
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|
+
if (CanBeNull())
|
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|
+
{
|
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|
+
if (object.Equals(x, default(T)))
|
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|
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{
|
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|
+
return object.Equals(y, default(T));
|
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|
+
}
|
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|
+
|
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|
+
if (object.Equals(y, default(T)))
|
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|
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{
|
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|
+
return false;
|
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|
+
}
|
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|
+
}
|
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|
+
|
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|
+
if (x is IEquatable<T> equatable)
|
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|
+
{
|
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|
+
return equatable.Equals(y);
|
230
|
+
}
|
231
|
+
|
232
|
+
if (x is IComparable<T> comparableT)
|
233
|
+
{
|
234
|
+
return comparableT.CompareTo(y) == 0;
|
235
|
+
}
|
236
|
+
|
237
|
+
if (x is IComparable comparable)
|
238
|
+
{
|
239
|
+
return comparable.CompareTo(y) == 0;
|
240
|
+
}
|
241
|
+
|
242
|
+
if (x is IEnumerable enumerableX && y is IEnumerable enumerableY)
|
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|
+
{
|
244
|
+
var enumeratorX = enumerableX.GetEnumerator();
|
245
|
+
var enumeratorY = enumerableY.GetEnumerator();
|
246
|
+
|
247
|
+
while (true)
|
248
|
+
{
|
249
|
+
bool hasNextX = enumeratorX.MoveNext();
|
250
|
+
bool hasNextY = enumeratorY.MoveNext();
|
251
|
+
|
252
|
+
if (!hasNextX || !hasNextY)
|
253
|
+
{
|
254
|
+
return hasNextX == hasNextY;
|
255
|
+
}
|
256
|
+
|
257
|
+
if (!Equals(enumeratorX.Current, enumeratorY.Current))
|
258
|
+
{
|
259
|
+
return false;
|
260
|
+
}
|
261
|
+
}
|
262
|
+
}
|
263
|
+
|
264
|
+
return object.Equals(x, y);
|
265
|
+
}
|
266
|
+
|
267
|
+
int IEqualityComparer<T>.GetHashCode(T obj)
|
268
|
+
{
|
269
|
+
throw new NotImplementedException();
|
270
|
+
}
|
271
|
+
}
|
272
|
+
}
|
@@ -0,0 +1,266 @@
|
|
1
|
+
#nullable disable
|
2
|
+
|
3
|
+
using System.Diagnostics;
|
4
|
+
|
5
|
+
namespace NuGetUpdater.Core.Test.Utilities;
|
6
|
+
|
7
|
+
public class DiffUtil
|
8
|
+
{
|
9
|
+
private enum EditKind
|
10
|
+
{
|
11
|
+
/// <summary>
|
12
|
+
/// No change.
|
13
|
+
/// </summary>
|
14
|
+
None = 0,
|
15
|
+
|
16
|
+
/// <summary>
|
17
|
+
/// Node value was updated.
|
18
|
+
/// </summary>
|
19
|
+
Update = 1,
|
20
|
+
|
21
|
+
/// <summary>
|
22
|
+
/// Node was inserted.
|
23
|
+
/// </summary>
|
24
|
+
Insert = 2,
|
25
|
+
|
26
|
+
/// <summary>
|
27
|
+
/// Node was deleted.
|
28
|
+
/// </summary>
|
29
|
+
Delete = 3,
|
30
|
+
}
|
31
|
+
|
32
|
+
private class LCS<T> : LongestCommonSubsequence<IList<T>>
|
33
|
+
{
|
34
|
+
public static readonly LCS<T> Default = new LCS<T>(EqualityComparer<T>.Default);
|
35
|
+
|
36
|
+
private readonly IEqualityComparer<T> _comparer;
|
37
|
+
|
38
|
+
public LCS(IEqualityComparer<T> comparer)
|
39
|
+
{
|
40
|
+
_comparer = comparer;
|
41
|
+
}
|
42
|
+
|
43
|
+
protected override bool ItemsEqual(IList<T> sequenceA, int indexA, IList<T> sequenceB, int indexB)
|
44
|
+
{
|
45
|
+
return _comparer.Equals(sequenceA[indexA], sequenceB[indexB]);
|
46
|
+
}
|
47
|
+
|
48
|
+
public IEnumerable<string> CalculateDiff(IList<T> sequenceA, IList<T> sequenceB, Func<T, string> toString)
|
49
|
+
{
|
50
|
+
foreach (var edit in GetEdits(sequenceA, sequenceA.Count, sequenceB, sequenceB.Count).Reverse())
|
51
|
+
{
|
52
|
+
switch (edit.Kind)
|
53
|
+
{
|
54
|
+
case EditKind.Delete:
|
55
|
+
yield return "--> " + toString(sequenceA[edit.IndexA]);
|
56
|
+
break;
|
57
|
+
|
58
|
+
case EditKind.Insert:
|
59
|
+
yield return "++> " + toString(sequenceB[edit.IndexB]);
|
60
|
+
break;
|
61
|
+
|
62
|
+
case EditKind.Update:
|
63
|
+
yield return " " + toString(sequenceB[edit.IndexB]);
|
64
|
+
break;
|
65
|
+
}
|
66
|
+
}
|
67
|
+
}
|
68
|
+
}
|
69
|
+
|
70
|
+
public static string DiffReport<T>(IEnumerable<T> expected, IEnumerable<T> actual, string separator, IEqualityComparer<T> comparer = null, Func<T, string> toString = null)
|
71
|
+
{
|
72
|
+
var lcs = (comparer != null) ? new LCS<T>(comparer) : LCS<T>.Default;
|
73
|
+
toString = toString ?? new Func<T, string>(obj => obj.ToString());
|
74
|
+
|
75
|
+
IList<T> expectedList = expected as IList<T> ?? new List<T>(expected);
|
76
|
+
IList<T> actualList = actual as IList<T> ?? new List<T>(actual);
|
77
|
+
|
78
|
+
return string.Join(separator, lcs.CalculateDiff(expectedList, actualList, toString));
|
79
|
+
}
|
80
|
+
|
81
|
+
private static readonly char[] s_lineSplitChars = new[] { '\r', '\n' };
|
82
|
+
|
83
|
+
public static string[] Lines(string s)
|
84
|
+
{
|
85
|
+
return s.Split(s_lineSplitChars, StringSplitOptions.RemoveEmptyEntries);
|
86
|
+
}
|
87
|
+
|
88
|
+
public static string DiffReport(string expected, string actual)
|
89
|
+
{
|
90
|
+
var exlines = Lines(expected);
|
91
|
+
var aclines = Lines(actual);
|
92
|
+
return DiffReport(exlines, aclines, separator: Environment.NewLine);
|
93
|
+
}
|
94
|
+
|
95
|
+
/// <summary>
|
96
|
+
/// Calculates Longest Common Subsequence.
|
97
|
+
/// </summary>
|
98
|
+
private abstract class LongestCommonSubsequence<TSequence>
|
99
|
+
{
|
100
|
+
protected readonly struct Edit
|
101
|
+
{
|
102
|
+
public readonly EditKind Kind;
|
103
|
+
public readonly int IndexA;
|
104
|
+
public readonly int IndexB;
|
105
|
+
|
106
|
+
internal Edit(EditKind kind, int indexA, int indexB)
|
107
|
+
{
|
108
|
+
this.Kind = kind;
|
109
|
+
this.IndexA = indexA;
|
110
|
+
this.IndexB = indexB;
|
111
|
+
}
|
112
|
+
}
|
113
|
+
|
114
|
+
private const int DeleteCost = 1;
|
115
|
+
private const int InsertCost = 1;
|
116
|
+
private const int UpdateCost = 2;
|
117
|
+
|
118
|
+
protected abstract bool ItemsEqual(TSequence sequenceA, int indexA, TSequence sequenceB, int indexB);
|
119
|
+
|
120
|
+
protected IEnumerable<KeyValuePair<int, int>> GetMatchingPairs(TSequence sequenceA, int lengthA, TSequence sequenceB, int lengthB)
|
121
|
+
{
|
122
|
+
int[,] d = ComputeCostMatrix(sequenceA, lengthA, sequenceB, lengthB);
|
123
|
+
int i = lengthA;
|
124
|
+
int j = lengthB;
|
125
|
+
|
126
|
+
while (i != 0 && j != 0)
|
127
|
+
{
|
128
|
+
if (d[i, j] == d[i - 1, j] + DeleteCost)
|
129
|
+
{
|
130
|
+
i--;
|
131
|
+
}
|
132
|
+
else if (d[i, j] == d[i, j - 1] + InsertCost)
|
133
|
+
{
|
134
|
+
j--;
|
135
|
+
}
|
136
|
+
else
|
137
|
+
{
|
138
|
+
i--;
|
139
|
+
j--;
|
140
|
+
yield return new KeyValuePair<int, int>(i, j);
|
141
|
+
}
|
142
|
+
}
|
143
|
+
}
|
144
|
+
|
145
|
+
protected IEnumerable<Edit> GetEdits(TSequence sequenceA, int lengthA, TSequence sequenceB, int lengthB)
|
146
|
+
{
|
147
|
+
int[,] d = ComputeCostMatrix(sequenceA, lengthA, sequenceB, lengthB);
|
148
|
+
int i = lengthA;
|
149
|
+
int j = lengthB;
|
150
|
+
|
151
|
+
while (i != 0 && j != 0)
|
152
|
+
{
|
153
|
+
if (d[i, j] == d[i - 1, j] + DeleteCost)
|
154
|
+
{
|
155
|
+
i--;
|
156
|
+
yield return new Edit(EditKind.Delete, i, -1);
|
157
|
+
}
|
158
|
+
else if (d[i, j] == d[i, j - 1] + InsertCost)
|
159
|
+
{
|
160
|
+
j--;
|
161
|
+
yield return new Edit(EditKind.Insert, -1, j);
|
162
|
+
}
|
163
|
+
else
|
164
|
+
{
|
165
|
+
i--;
|
166
|
+
j--;
|
167
|
+
yield return new Edit(EditKind.Update, i, j);
|
168
|
+
}
|
169
|
+
}
|
170
|
+
|
171
|
+
while (i > 0)
|
172
|
+
{
|
173
|
+
i--;
|
174
|
+
yield return new Edit(EditKind.Delete, i, -1);
|
175
|
+
}
|
176
|
+
|
177
|
+
while (j > 0)
|
178
|
+
{
|
179
|
+
j--;
|
180
|
+
yield return new Edit(EditKind.Insert, -1, j);
|
181
|
+
}
|
182
|
+
}
|
183
|
+
|
184
|
+
/// <summary>
|
185
|
+
/// Returns a distance [0..1] of the specified sequences.
|
186
|
+
/// The smaller distance the more of their elements match.
|
187
|
+
/// </summary>
|
188
|
+
/// <summary>
|
189
|
+
/// Returns a distance [0..1] of the specified sequences.
|
190
|
+
/// The smaller distance the more of their elements match.
|
191
|
+
/// </summary>
|
192
|
+
protected double ComputeDistance(TSequence sequenceA, int lengthA, TSequence sequenceB, int lengthB)
|
193
|
+
{
|
194
|
+
Debug.Assert(lengthA >= 0 && lengthB >= 0);
|
195
|
+
|
196
|
+
if (lengthA == 0 || lengthB == 0)
|
197
|
+
{
|
198
|
+
return (lengthA == lengthB) ? 0.0 : 1.0;
|
199
|
+
}
|
200
|
+
|
201
|
+
int lcsLength = 0;
|
202
|
+
foreach (var pair in GetMatchingPairs(sequenceA, lengthA, sequenceB, lengthB))
|
203
|
+
{
|
204
|
+
lcsLength++;
|
205
|
+
}
|
206
|
+
|
207
|
+
int max = Math.Max(lengthA, lengthB);
|
208
|
+
Debug.Assert(lcsLength <= max);
|
209
|
+
return 1.0 - (double)lcsLength / (double)max;
|
210
|
+
}
|
211
|
+
|
212
|
+
/// <summary>
|
213
|
+
/// Calculates costs of all paths in an edit graph starting from vertex (0,0) and ending in vertex (lengthA, lengthB).
|
214
|
+
/// </summary>
|
215
|
+
/// <remarks>
|
216
|
+
/// The edit graph for A and B has a vertex at each point in the grid (i,j), i in [0, lengthA] and j in [0, lengthB].
|
217
|
+
///
|
218
|
+
/// The vertices of the edit graph are connected by horizontal, vertical, and diagonal directed edges to form a directed acyclic graph.
|
219
|
+
/// Horizontal edges connect each vertex to its right neighbor.
|
220
|
+
/// Vertical edges connect each vertex to the neighbor below it.
|
221
|
+
/// Diagonal edges connect vertex (i,j) to vertex (i-1,j-1) if <see cref="ItemsEqual"/>(sequenceA[i-1],sequenceB[j-1]) is true.
|
222
|
+
///
|
223
|
+
/// Editing starts with S = [].
|
224
|
+
/// Move along horizontal edge (i-1,j)-(i,j) represents the fact that sequenceA[i-1] is not added to S.
|
225
|
+
/// Move along vertical edge (i,j-1)-(i,j) represents an insert of sequenceB[j-1] to S.
|
226
|
+
/// Move along diagonal edge (i-1,j-1)-(i,j) represents an addition of sequenceB[j-1] to S via an acceptable
|
227
|
+
/// change of sequenceA[i-1] to sequenceB[j-1].
|
228
|
+
///
|
229
|
+
/// In every vertex the cheapest outgoing edge is selected.
|
230
|
+
/// The number of diagonal edges on the path from (0,0) to (lengthA, lengthB) is the length of the longest common subsequence.
|
231
|
+
/// </remarks>
|
232
|
+
private int[,] ComputeCostMatrix(TSequence sequenceA, int lengthA, TSequence sequenceB, int lengthB)
|
233
|
+
{
|
234
|
+
var la = lengthA + 1;
|
235
|
+
var lb = lengthB + 1;
|
236
|
+
|
237
|
+
// TODO: Optimization possible: O(ND) time, O(N) space
|
238
|
+
// EUGENE W. MYERS: An O(ND) Difference Algorithm and Its Variations
|
239
|
+
var d = new int[la, lb];
|
240
|
+
|
241
|
+
d[0, 0] = 0;
|
242
|
+
for (int i = 1; i <= lengthA; i++)
|
243
|
+
{
|
244
|
+
d[i, 0] = d[i - 1, 0] + DeleteCost;
|
245
|
+
}
|
246
|
+
|
247
|
+
for (int j = 1; j <= lengthB; j++)
|
248
|
+
{
|
249
|
+
d[0, j] = d[0, j - 1] + InsertCost;
|
250
|
+
}
|
251
|
+
|
252
|
+
for (int i = 1; i <= lengthA; i++)
|
253
|
+
{
|
254
|
+
for (int j = 1; j <= lengthB; j++)
|
255
|
+
{
|
256
|
+
int m1 = d[i - 1, j - 1] + (ItemsEqual(sequenceA, i - 1, sequenceB, j - 1) ? 0 : UpdateCost);
|
257
|
+
int m2 = d[i - 1, j] + DeleteCost;
|
258
|
+
int m3 = d[i, j - 1] + InsertCost;
|
259
|
+
d[i, j] = Math.Min(Math.Min(m1, m2), m3);
|
260
|
+
}
|
261
|
+
}
|
262
|
+
|
263
|
+
return d;
|
264
|
+
}
|
265
|
+
}
|
266
|
+
}
|