demultiplexer 0.0.1

data/test/helper.rb

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+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
+#                                                                              #
+# Copyright (C) 2014-2015 Martin Asser Hansen (mail@maasha.dk).                #
+#                                                                              #
+# This program is free software; you can redistribute it and/or                #
+# modify it under the terms of the GNU General Public License                  #
+# as published by the Free Software Foundation; either version 2               #
+# of the License, or (at your option) any later version.                       #
+#                                                                              #
+# This program is distributed in the hope that it will be useful,              #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of               #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the                #
+# GNU General Public License for more details.                                 #
+#                                                                              #
+# You should have received a copy of the GNU General Public License            #
+# along with this program; if not, write to the Free Software                  #
+# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301,    #
+# USA.                                                                         #
+#                                                                              #
+# http://www.gnu.org/copyleft/gpl.html                                         #
+#                                                                              #
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
+
+require 'demultiplexer'
+require 'test/unit'
+
+module Kernel
+  def capture_stdout
+    out = StringIO.new
+    $stdout = out
+    yield
+    return out.string
+  ensure
+    $stdout = STDOUT
+  end
+
+  def capture_stderr
+    out = StringIO.new
+    $stderr = out
+    yield
+    return out.string
+  ensure
+    $stderr = STDERR
+  end
+end
+
+class Test::Unit::TestCase
+  def self.test(desc, &impl)
+    define_method("test #{desc}", &impl)
+  end
+end

data/test/test_data_io.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestDataIO < Test::Unit::TestCase 
+end

data/test/test_demultiplexer.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestDemultiplexer < Test::Unit::TestCase 
+end

data/test/test_index_builder.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestIndexBuilder < Test::Unit::TestCase 
+end

data/test/test_sample_reader.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestSampleReader < Test::Unit::TestCase 
+end

data/test/test_screen.rb

@@ -0,0 +1,7 @@
+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestScreen < Test::Unit::TestCase 
+end

data/test/test_status.rb

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+#!/usr/bin/env ruby
+$:.unshift File.join(File.dirname(__FILE__), '..')
+
+require 'test/helper'
+
+class TestStatus < Test::Unit::TestCase 
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: demultiplexer
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Martin A. Hansen
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-03-22 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: biopieces
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.4.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.4.1
+- !ruby/object:Gem::Dependency
+  name: google_hash
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.8.4
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.8.4
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.7.4
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.7.4
+- !ruby/object:Gem::Dependency
+  name: simplecov
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.9.2
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 0.9.2
+description: Demultiplex sequences from the Illumina platform.
+email: mail@maasha.dk
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- LICENSE
+- README.md
+- Rakefile
+- bin/demultiplexer
+- demultiplexer.gemspec
+- lib/data_io.rb
+- lib/demultiplexer.rb
+- lib/demultiplexer/version.rb
+- lib/index_builder.rb
+- lib/sample_reader.rb
+- lib/screen.rb
+- lib/status.rb
+- test/helper.rb
+- test/test_data_io.rb
+- test/test_demultiplexer.rb
+- test/test_index_builder.rb
+- test/test_sample_reader.rb
+- test/test_screen.rb
+- test/test_status.rb
+homepage: http://github.com/maasha/demultiplexer
+licenses:
+- GPL2
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: demultiplexer
+rubygems_version: 2.4.5
+signing_key: 
+specification_version: 4
+summary: Demultiplexer
+test_files:
+- test/helper.rb
+- test/test_data_io.rb
+- test/test_demultiplexer.rb
+- test/test_index_builder.rb
+- test/test_sample_reader.rb
+- test/test_screen.rb
+- test/test_status.rb
+has_rdoc: