ddr-models 1.2.0

data/config/initializers/devise.rb~

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+require 'devise'
+
+# Use this hook to configure devise mailer, warden hooks and so forth.
+# Many of these configuration options can be set straight in your model.
+Devise.setup do |config|
+
+  # Given the modules that we implement, this shouldn't be used, but Devise >= 3.1 requires it,
+  # so a random value should suffice.
+  config.secret_key = SecureRandom.hex(64)
+
+  # ==> Mailer Configuration
+  # Configure the e-mail address which will be shown in Devise::Mailer,
+  # note that it will be overwritten if you use your own mailer class with default "from" parameter.
+  config.mailer_sender = "lib-drs@duke.edu"
+
+  # Configure the class responsible to send e-mails.
+  # config.mailer = "Devise::Mailer"
+
+  # ==> ORM configuration
+  # Load and configure the ORM. Supports :active_record (default) and
+  # :mongoid (bson_ext recommended) by default. Other ORMs may be
+  # available as additional gems.
+  require 'devise/orm/active_record'
+
+  # ==> Configuration for any authentication mechanism
+  # Configure which keys are used when authenticating a user. The default is
+  # just :email. You can configure it to use [:username, :subdomain], so for
+  # authenticating a user, both parameters are required. Remember that those
+  # parameters are used only when authenticating and not when retrieving from
+  # session. If you need permissions, you should implement that in a before filter.
+  # You can also supply a hash where the value is a boolean determining whether
+  # or not authentication should be aborted when the value is not present.
+  config.authentication_keys = [ :username ]
+
+  # Configure parameters from the request object used for authentication. Each entry
+  # given should be a request method and it will automatically be passed to the
+  # find_for_authentication method and considered in your model lookup. For instance,
+  # if you set :request_keys to [:subdomain], :subdomain will be used on authentication.
+  # The same considerations mentioned for authentication_keys also apply to request_keys.
+  # config.request_keys = []
+
+  # Configure which authentication keys should be case-insensitive.
+  # These keys will be downcased upon creating or modifying a user and when used
+  # to authenticate or find a user. Default is :email.
+  config.case_insensitive_keys = [ :username ]
+
+  # Configure which authentication keys should have whitespace stripped.
+  # These keys will have whitespace before and after removed upon creating or
+  # modifying a user and when used to authenticate or find a user. Default is :email.
+  config.strip_whitespace_keys = [ :username ]
+
+  # Tell if authentication through request.params is enabled. True by default.
+  # It can be set to an array that will enable params authentication only for the
+  # given strategies, for example, `config.params_authenticatable = [:database]` will
+  # enable it only for database (email + password) authentication.
+  config.params_authenticatable = [:database]
+
+  # Tell if authentication through HTTP Basic Auth is enabled. False by default.
+  # It can be set to an array that will enable http authentication only for the
+  # given strategies, for example, `config.http_authenticatable = [:token]` will
+  # enable it only for token authentication.
+  # config.http_authenticatable = false
+
+  # If http headers should be returned for AJAX requests. True by default.
+  # config.http_authenticatable_on_xhr = true
+
+  # The realm used in Http Basic Authentication. "Application" by default.
+  # config.http_authentication_realm = "Application"
+
+  # It will change confirmation, password recovery and other workflows
+  # to behave the same regardless if the e-mail provided was right or wrong.
+  # Does not affect registerable.
+  # config.paranoid = true
+
+  # By default Devise will store the user in session. You can skip storage for
+  # :http_auth and :token_auth by adding those symbols to the array below.
+  # Notice that if you are skipping storage for all authentication paths, you
+  # may want to disable generating routes to Devise's sessions controller by
+  # passing :skip => :sessions to `devise_for` in your config/routes.rb
+  config.skip_session_storage = [:http_auth]
+
+  # ==> Configuration for :database_authenticatable
+  # For bcrypt, this is the cost for hashing the password and defaults to 10. If
+  # using other encryptors, it sets how many times you want the password re-encrypted.
+  #
+  # Limiting the stretches to just one in testing will increase the performance of
+  # your test suite dramatically. However, it is STRONGLY RECOMMENDED to not use
+  # a value less than 10 in other environments.
+  config.stretches = Rails.env.test? ? 1 : 10
+
+  # Setup a pepper to generate the encrypted password.
+  # config.pepper = "37669e0c50042b93e63f790c4102864bace2ee0a30eecad6fca7d490f3124d855d8bc6d2978e5500fb266aab2b8c8003d9f202a1f23e4c2c8e8f105b7c46a68f"
+
+  # ==> Configuration for :confirmable
+  # A period that the user is allowed to access the website even without
+  # confirming his account. For instance, if set to 2.days, the user will be
+  # able to access the website for two days without confirming his account,
+  # access will be blocked just in the third day. Default is 0.days, meaning
+  # the user cannot access the website without confirming his account.
+  # config.allow_unconfirmed_access_for = 2.days
+
+  # If true, requires any email changes to be confirmed (exactly the same way as
+  # initial account confirmation) to be applied. Requires additional unconfirmed_email
+  # db field (see migrations). Until confirmed new email is stored in
+  # unconfirmed email column, and copied to email column on successful confirmation.
+  config.reconfirmable = true
+
+  # Defines which key will be used when confirming an account
+  config.confirmation_keys = [ :username ]
+
+  # ==> Configuration for :rememberable
+  # The time the user will be remembered without asking for credentials again.
+  # config.remember_for = 2.weeks
+
+  # If true, extends the user's remember period when remembered via cookie.
+  # config.extend_remember_period = false
+
+  # Options to be passed to the created cookie. For instance, you can set
+  # :secure => true in order to force SSL only cookies.
+  # config.rememberable_options = {}
+
+  # ==> Configuration for :validatable
+  # Range for password length. Default is 6..128.
+  # config.password_length = 6..128
+
+  # Email regex used to validate email formats. It simply asserts that
+  # an one (and only one) @ exists in the given string. This is mainly
+  # to give user feedback and not to assert the e-mail validity.
+  # config.email_regexp = /\A[^@]+@[^@]+\z/
+
+  # ==> Configuration for :timeoutable
+  # The time you want to timeout the user session without activity. After this
+  # time the user will be asked for credentials again. Default is 30 minutes.
+  # config.timeout_in = 30.minutes
+  
+  # If true, expires auth token on session timeout.
+  # config.expire_auth_token_on_timeout = false
+
+  # ==> Configuration for :lockable
+  # Defines which strategy will be used to lock an account.
+  # :failed_attempts = Locks an account after a number of failed attempts to sign in.
+  # :none            = No lock strategy. You should handle locking by yourself.
+  # config.lock_strategy = :failed_attempts
+
+  # Defines which key will be used when locking and unlocking an account
+  config.unlock_keys = [ :username ]
+
+  # Defines which strategy will be used to unlock an account.
+  # :email = Sends an unlock link to the user email
+  # :time  = Re-enables login after a certain amount of time (see :unlock_in below)
+  # :both  = Enables both strategies
+  # :none  = No unlock strategy. You should handle unlocking by yourself.
+  # config.unlock_strategy = :both
+
+  # Number of authentication tries before locking an account if lock_strategy
+  # is failed attempts.
+  # config.maximum_attempts = 20
+
+  # Time interval to unlock the account if :time is enabled as unlock_strategy.
+  # config.unlock_in = 1.hour
+
+  # ==> Configuration for :recoverable
+  #
+  # Defines which key will be used when recovering the password for an account
+  config.reset_password_keys = [ :username ]
+
+  # Time interval you can reset your password with a reset password key.
+  # Don't put a too small interval or your users won't have the time to
+  # change their passwords.
+  config.reset_password_within = 6.hours
+
+  # ==> Configuration for :encryptable
+  # Allow you to use another encryption algorithm besides bcrypt (default). You can use
+  # :sha1, :sha512 or encryptors from others authentication tools as :clearance_sha1,
+  # :authlogic_sha512 (then you should set stretches above to 20 for default behavior)
+  # and :restful_authentication_sha1 (then you should set stretches to 10, and copy
+  # REST_AUTH_SITE_KEY to pepper)
+  # config.encryptor = :sha512
+
+  # ==> Configuration for :token_authenticatable
+  # Defines name of the authentication token params key
+  # config.token_authentication_key = :auth_token
+
+  # ==> Scopes configuration
+  # Turn scoped views on. Before rendering "sessions/new", it will first check for
+  # "users/sessions/new". It's turned off by default because it's slower if you
+  # are using only default views.
+  # config.scoped_views = false
+
+  # Configure the default scope given to Warden. By default it's the first
+  # devise role declared in your routes (usually :user).
+  # config.default_scope = :user
+
+  # Set this configuration to false if you want /users/sign_out to sign out
+  # only the current scope. By default, Devise signs out all scopes.
+  # config.sign_out_all_scopes = true
+
+  # ==> Navigation configuration
+  # Lists the formats that should be treated as navigational. Formats like
+  # :html, should redirect to the sign in page when the user does not have
+  # access, but formats like :xml or :json, should return 401.
+  #
+  # If you have any extra navigational formats, like :iphone or :mobile, you
+  # should add them to the navigational formats lists.
+  #
+  # The "*/*" below is required to match Internet Explorer requests.
+  # config.navigational_formats = ["*/*", :html]
+
+  # The default HTTP method used to sign out a resource. Default is :delete.
+  config.sign_out_via = :get
+
+  # ==> OmniAuth
+  # Add a new OmniAuth provider. Check the wiki for more information on setting
+  # up on your models and hooks.
+  # config.omniauth :github, 'APP_ID', 'APP_SECRET', :scope => 'user,public_repo'
+
+  # ==> Warden configuration
+  # If you want to use other strategies, that are not supported by Devise, or
+  # change the failure app, you can configure them inside the config.warden block.
+  #
+  # config.warden do |manager|
+    # manager.intercept_401 = false
+    # manager.default_strategies(:scope => :user).unshift :remote_user_authenticatable
+  # end
+
+  config.warden do |manager|
+    # :superuser scope
+    manager.serialize_into_session(:superuser) { |superuser| superuser.id }
+    manager.serialize_from_session(:superuser) { |id| User.find(id) }
+  end
+
+  # ==> Mountable engine configurations
+  # When using Devise inside an engine, let's call it `MyEngine`, and this engine
+  # is mountable, there are some extra configurations to be taken into account.
+  # The following options are available, assuming the engine is mounted as:
+  #
+  #     mount MyEngine, at: "/my_engine"
+  #
+  # The router that invoked `devise_for`, in the example above, would be:
+  # config.router_name = :my_engine
+  #
+  # When using omniauth, Devise cannot automatically set Omniauth path,
+  # so you need to do it manually. For the users scope, it would be:
+  # config.omniauth_path_prefix = "/my_engine/users/auth"
+end

data/config/initializers/subscriptions.rb

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+##
+## Subscriptions to ActiveSupport::Notifications instrumentation events
+##
+
+# Fixity Checks
+ActiveSupport::Notifications.subscribe(Ddr::Notifications::FIXITY_CHECK, Ddr::Events::FixityCheckEvent)
+
+# Virus Checks
+ActiveSupport::Notifications.subscribe(Ddr::Notifications::VIRUS_CHECK, Ddr::Events::VirusCheckEvent)
+
+# Creation
+ActiveSupport::Notifications.subscribe(Ddr::Notifications::CREATION, Ddr::Events::CreationEvent)
+
+# Update
+ActiveSupport::Notifications.subscribe(Ddr::Notifications::UPDATE, Ddr::Events::UpdateEvent)

data/config/routes.rb

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+Rails.application.routes.draw do
+end

data/db/migrate/20141021233359_create_events.rb

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+class CreateEvents < ActiveRecord::Migration
+  def up
+    unless table_exists?("events")
+      create_table "events" do |t|
+        t.datetime "event_date_time"
+        t.integer  "user_id"
+        t.string   "type"
+        t.string   "pid"
+        t.string   "software"
+        t.text     "comment"
+        t.datetime "created_at"
+        t.datetime "updated_at"
+        t.string   "summary"
+        t.string   "outcome"
+        t.text     "detail"
+      end
+
+      add_index "events", ["event_date_time"], name: "index_events_on_event_date_time"
+      add_index "events", ["outcome"], name: "index_events_on_outcome"
+      add_index "events", ["pid"], name: "index_events_on_pid"
+      add_index "events", ["type"], name: "index_events_on_type"
+    end
+  end
+
+  def down
+    raise ActiveRecord::IrreversibleMigration
+  end
+end

data/db/migrate/20141021234156_create_minted_ids.rb

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+class CreateMintedIds < ActiveRecord::Migration
+  def up
+    unless table_exists?("minted_ids")
+      create_table "minted_ids" do |t|
+        t.string   "minted_id"
+        t.string   "referent"
+        t.datetime "created_at"
+        t.datetime "updated_at"
+      end
+
+      add_index "minted_ids", ["minted_id"], name: "index_minted_ids_on_minted_id", unique: true
+      add_index "minted_ids", ["referent"], name: "index_minted_ids_on_referent"
+    end
+  end
+
+  def down
+    raise ActiveRecord::IrreversibleMigration
+  end
+end

data/db/migrate/20141103192146_create_workflow_state.rb

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+class CreateWorkflowState < ActiveRecord::Migration
+  def change
+    create_table "workflow_states" do |t|
+      t.string   "pid"
+      t.string   "workflow_state"
+      t.datetime "created_at"
+      t.datetime "updated_at"
+    end
+
+    add_index "workflow_states", ["pid"], name: "index_workflow_states_on_pid", unique: true
+    add_index "workflow_states", ["workflow_state"], name: "index_workflow_states_on_workflow_state"
+  end
+end

data/db/migrate/20141104181418_create_users.rb

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+class CreateUsers < ActiveRecord::Migration
+  def up
+    unless table_exists?("users")
+      create_table "users" do |t|
+        t.string   "email",                  default: "", null: false
+        t.string   "encrypted_password",     default: "", null: false
+        t.string   "reset_password_token"
+        t.datetime "reset_password_sent_at"
+        t.datetime "remember_created_at"
+        t.integer  "sign_in_count",          default: 0
+        t.datetime "current_sign_in_at"
+        t.datetime "last_sign_in_at"
+        t.string   "current_sign_in_ip"
+        t.string   "last_sign_in_ip"
+        t.datetime "created_at",                          null: false
+        t.datetime "updated_at",                          null: false
+        t.string   "username",               default: "", null: false
+        t.string   "first_name"
+        t.string   "middle_name"
+        t.string   "nickname"
+        t.string   "last_name"
+        t.string   "display_name"
+      end
+
+      add_index "users", ["email"], name: "index_users_on_email"
+      add_index "users", ["reset_password_token"], name: "index_users_on_reset_password_token", unique: true
+      add_index "users", ["username"], name: "index_users_on_username", unique: true
+    end
+  end
+
+  def down
+    raise ActiveRecord::IrreversibleMigration
+  end
+end

data/db/migrate/20141104181418_create_users.rb~

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+class CreateUsers < ActiveRecord::Migration
+  def change
+    create_table :users do |t|
+    end
+  end
+end

data/lib/ddr-models.rb

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+require 'ddr/models'

data/lib/ddr/actions.rb

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+module Ddr
+  module Actions
+    extend ActiveSupport::Autoload
+    
+    autoload :FixityCheck
+    
+  end
+end

data/lib/ddr/actions/fixity_check.rb

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+module Ddr
+  module Actions
+    class FixityCheck
+
+      # Return result of fixity check - wrapped by a notifier
+      def self.execute(object)
+        ActiveSupport::Notifications.instrument(Ddr::Notifications::FIXITY_CHECK) do |payload|
+          payload[:result] = _execute(object)
+        end
+      end
+
+      # Return result of fixity check
+      def self._execute(object)
+        Result.new(pid: object.pid).tap do |r|
+          object.datastreams_to_validate.each do |dsid, ds|
+            r.success &&= ds.dsChecksumValid
+            r.results[dsid] = ds.profile
+          end
+        end
+      end
+
+      class Result
+        attr_accessor :pid, :success, :results, :checked_at
+
+        def initialize(args={})
+          @pid = args[:pid]
+          @success = args[:success] || true
+          @results = args[:results] || {}
+          @checked_at = args[:checked_at] || Time.now.utc
+        end
+      end
+
+    end
+  end
+end

data/lib/ddr/auth.rb

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+module Ddr
+  module Auth
+    extend ActiveSupport::Autoload
+
+    autoload :User
+    autoload :Superuser
+    autoload :Ability
+    autoload :GroupService
+    autoload :GrouperService
+    autoload :RemoteGroupService
+
+    # Superuser group
+    mattr_accessor :superuser_group
+
+    ## Remote groups (i.e., Grouper) config settings
+    # request.env key for group memberships
+    mattr_accessor :remote_groups_env_key do
+      "ismemberof"
+    end
+
+    # request.env value internal delimiter
+    mattr_accessor :remote_groups_env_value_delim do
+      ";"
+    end
+
+    # pattern/repl for converting request.env membership values to proper (Grouper) group names
+    mattr_accessor :remote_groups_env_value_sub do
+      [/^urn:mace:duke\.edu:groups/, "duke"]
+    end
+
+    # Filter for getting list of remote groups for the repository - String, not Regexp
+    mattr_accessor :remote_groups_name_filter do
+      "duke:library:repository:ddr:"
+    end
+
+    mattr_accessor :everyone_group do
+      "public"
+    end
+
+    mattr_accessor :authenticated_users_group do
+      "registered"
+    end
+
+  end
+end