dcm4chee 0.1.0
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- data/README.md +45 -0
- data/Rakefile +9 -0
- data/app/controllers/dcm4chee/api/v1/application_entities_controller.rb +178 -0
- data/app/controllers/dcm4chee/api/v1/base_controller.rb +15 -0
- data/app/controllers/dcm4chee/api/v1/dicom_objects_controller.rb +58 -0
- data/app/controllers/dcm4chee/api/v1/file_systems_controller.rb +37 -0
- data/app/controllers/dcm4chee/api/v1/instances_controller.rb +68 -0
- data/app/controllers/dcm4chee/api/v1/modalities_controller.rb +29 -0
- data/app/controllers/dcm4chee/api/v1/patients_controller.rb +77 -0
- data/app/controllers/dcm4chee/api/v1/series_controller.rb +69 -0
- data/app/controllers/dcm4chee/api/v1/source_aets_controller.rb +29 -0
- data/app/controllers/dcm4chee/api/v1/studies_controller.rb +69 -0
- data/app/controllers/dcm4chee/api/v1/trashed_instances_controller.rb +82 -0
- data/app/controllers/dcm4chee/api/v1/trashed_patients_controller.rb +84 -0
- data/app/controllers/dcm4chee/api/v1/trashed_series_controller.rb +81 -0
- data/app/controllers/dcm4chee/api/v1/trashed_studies_controller.rb +81 -0
- data/app/controllers/dcm4chee/api/v1/trashes_controller.rb +23 -0
- data/app/controllers/dcm4chee/application_controller.rb +4 -0
- data/app/models/dcm4chee/application_entity.rb +129 -0
- data/app/models/dcm4chee/dicom_file.rb +62 -0
- data/app/models/dcm4chee/file_system.rb +95 -0
- data/app/models/dcm4chee/instance.rb +69 -0
- data/app/models/dcm4chee/modality.rb +17 -0
- data/app/models/dcm4chee/patient.rb +42 -0
- data/app/models/dcm4chee/series.rb +78 -0
- data/app/models/dcm4chee/source_aet.rb +17 -0
- data/app/models/dcm4chee/study.rb +60 -0
- data/app/models/dcm4chee/trashed_dicom_file.rb +58 -0
- data/app/models/dcm4chee/trashed_instance.rb +56 -0
- data/app/models/dcm4chee/trashed_patient.rb +40 -0
- data/app/models/dcm4chee/trashed_series.rb +50 -0
- data/app/models/dcm4chee/trashed_study.rb +40 -0
- data/config/routes.rb +27 -0
- data/lib/dcm4chee.rb +58 -0
- data/lib/dcm4chee/api_constraints.rb +12 -0
- data/lib/dcm4chee/dicom_object_manager.rb +48 -0
- data/lib/dcm4chee/engine.rb +5 -0
- data/lib/dcm4chee/models/has_dicom_object.rb +71 -0
- data/lib/dcm4chee/services/application_entity_service.rb +113 -0
- data/lib/dcm4chee/services/content_edit_service.rb +37 -0
- data/lib/dcm4chee/services/file_system_management.rb +16 -0
- data/lib/dcm4chee/services/mbean.rb +11 -0
- data/lib/dcm4chee/services/move_scu_service.rb +54 -0
- data/lib/dcm4chee/version.rb +3 -0
- data/lib/tasks/dcm4chee_tasks.rake +4 -0
- metadata +241 -0
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module Dcm4chee
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class Modality
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include ::Virtus
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attribute :name, String
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def self.all
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modalities = []
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(Series.modalities + TrashedSeries.modalities).uniq.each do |n|
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modalities << Modality.new(name: n)
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end
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modalities
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end
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end
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end
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class Patient
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include DataMapper::Resource
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include DataMapper::Searcher
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include HasDicomObject
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storage_names[Dcm4chee.config.repository_name] = 'patient'
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# @return [Integer] primary key
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property :id, Serial, field: 'pk'
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# @return [Integer] ID of the patient
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property :pid, String, field: 'pat_id'
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# @return [String] Issuer of the patient id
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property :pid_issuer, String, field: 'pat_id_issuer'
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# @return [String] patient name
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property :name, String, field: 'pat_name'
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# @return [String] birthday
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property :birthday, String, field: 'pat_birthdate'
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# @return [String] gender
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property :gender, String, field: 'pat_sex'
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# @return [String] DICOM attributes
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dicom_field 'pat_attrs'
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has n, :studies, 'Dcm4chee::Study'
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def move_to_trash
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Dcm4chee.content_edit_service.move_patient_to_trash(id)
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end
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def self.repository(name = nil, &block)
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super(Dcm4chee.config.repository_name, &block)
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end
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end
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end
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class Series
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include DataMapper::Resource
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include DataMapper::Searcher
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include HasDicomObject
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storage_names[Dcm4chee.config.repository_name] = 'series'
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# @return [Integer] primary key
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property :id, Serial, field: 'pk'
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# @return [Integer] foreign key of {Study}
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property :study_id, Integer, field: 'study_fk'
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# @return [String] DICOM Series Instance UID(0020,000E)
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property :series_iuid, Text, field: 'series_iuid'
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# @return [String] DICOM Series NO(0020,0011)
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property :series_no, String, field: 'series_no'
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# @return [String] Source AET
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property :source_aet, String, field: 'src_aet'
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# @return [String] DICOM Modality(0008,0060)
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property :modality, String, field: 'modality'
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# @return [String] DICOM Series Description(0008,103E)
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property :description, Text, field: 'series_desc'
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# @return [Integer] DICOM Instances count(0020,1209)
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property :num_instances, Integer, field: 'num_instances'
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# DICOM Availability(0008,0056)
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# 0: ONLINE
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# 1: NEARLINE
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# 2: OFFLINE
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# 3: UNAVAILABLE
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#
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# @return [Integer] Availability(0008,0056)
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property :availability, Enum[0, 1, 2, 3], field: 'availability'
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dicom_field 'series_attrs'
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belongs_to :study, 'Dcm4chee::Study'
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has n, :instances, 'Dcm4chee::Instance'
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def study_iuid
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study.study_iuid
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end
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def move_to_trash
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Dcm4chee.content_edit_service.move_series_to_trash(id)
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end
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def as_json(opts = {})
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opts[:methods] ||= []
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opts[:methods] << :study_iuid
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super(opts)
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end
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class << self
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def repository(name = nil, &block)
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super(Dcm4chee.config.repository_name, &block)
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end
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def modalities
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Series.aggregate(:modality)
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end
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def source_aets
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Series.aggregate(:source_aet)
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end
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end
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end
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end
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module Dcm4chee
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class SourceAet
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include ::Virtus
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attribute :name, String
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def self.all
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source_aets = []
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(Series.source_aets + TrashedSeries.source_aets).uniq.each do |n|
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source_aets << SourceAet.new(name: n)
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end
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source_aets
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end
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end
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end
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class Study
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include DataMapper::Resource
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include DataMapper::Searcher
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include HasDicomObject
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storage_names[Dcm4chee.config.repository_name] = 'study'
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# @return [Integer] primary key
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property :id, Serial, field: 'pk'
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# @return [Integer] foreign key of {Patient}
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property :patient_id, Integer, field: 'patient_fk'
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# @return [String] DICOM Study Instance UID(0020,000D)
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property :study_iuid, Text, field: 'study_iuid'
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# @return [Integer] DICOM Study ID(0020,0010)
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property :sid, Integer, field: 'study_id'
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# @return [DateTime] DICOM timestamp, including date(0008,0020) and time(0008,0030)
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property :study_at, DateTime, field: 'study_datetime'
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# @return [String] DICOM Accession NO(0008,0050)
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property :accession_no, String, field: 'accession_no'
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# @return [String] DICOM Study Description(0008,1030)
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property :description, Text, field: 'study_desc'
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# @return [Integer] DICOM Series count(0020,1206)
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property :num_series, Integer, field: 'num_series'
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# @return [Integer] DICOM Instances count(0020,1208)
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property :num_instances, Integer, field: 'num_instances'
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# DICOM Availability(0008,0056)
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# 0: ONLINE
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# 1: NEARLINE
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# 2: OFFLINE
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# 3: UNAVAILABLE
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#
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# @return [Integer] DICOM Availability(0008,0056)
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property :availability, Enum[0, 1, 2, 3], field: 'availability'
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dicom_field 'study_attrs'
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belongs_to :patient, 'Dcm4chee::Patient'
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has n, :series, 'Dcm4chee::Series'
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def move_to_trash
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Dcm4chee.content_edit_service.move_study_to_trash(id)
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end
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def self.repository(name = nil, &block)
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super(Dcm4chee.config.repository_name, &block)
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end
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end
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end
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class TrashedDicomFile
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include DataMapper::Resource
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include DataMapper::Searcher
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include HasDicomObject
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storage_names[Dcm4chee.config.repository_name] = 'priv_file'
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# @return [Integer] primary key
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property :id, Serial, field: 'pk'
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# @return [Integer] foreign key of {Instance}
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property :trashed_instance_id, Integer, field: 'instance_fk'
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# @return [Integer] foreign key of {FileSystem}
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property :file_system_id, Integer, field: 'filesystem_fk'
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# @return [String] path
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property :path, Text, field: 'filepath'
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# @return [String] DICOM Transfer Syntax UID(0002,0010)
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property :transfer_syntax_uid, Text, field: 'file_tsuid'
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# @return [String] MD5 of the file
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property :md5, String, field: 'file_md5'
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# @return [Integer] file size
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property :size, Integer, field: 'file_size'
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# Availability:
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# -4: QUERY_HSM_FAILED
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# -3: MD5_CHECK_FAILED
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# -2: VERIFY_COMPRESS_FAILED
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# -1: COMPRESS_FAILED
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# 0: DEFAULT
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# 1: TO_ARCHIVE
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# 2: ARCHIVED
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# 3: COMPRESSING
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#
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# @return [Integer] file status
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property :availability, Enum[-4, -3, -2, -1, 0, 1, 2, 3], field: 'file_status'
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belongs_to :trashed_instance, 'Dcm4chee::TrashedInstance'
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belongs_to :file_system, 'Dcm4chee::FileSystem'
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# Load the dicom object from file
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# @return [DICOM::DObject] DICOM object
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def dcm
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@dcm ||= DICOM::DObject.read(File.join(file_system.path, path))
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end
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def self.repository(name = nil, &block)
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super(Dcm4chee.config.repository_name, &block)
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end
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end
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end
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class TrashedInstance
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include DataMapper::Resource
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include DataMapper::Searcher
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include HasDicomObject
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storage_names[Dcm4chee.config.repository_name] = 'priv_instance'
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# @return [Integer] primary key
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property :id, Serial, field: 'pk'
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# @return [Integer] foreign key of {Series}
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property :trashed_series_id, Integer, field: 'series_fk'
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# @return [DateTime] created time
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property :created_at, DateTime, field: 'created_time'
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# @return [String] DICOM SOP Instance UID(0008,0018)
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property :sop_iuid, Text, field: 'sop_iuid'
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dicom_field 'inst_attrs'
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belongs_to :trashed_series, 'Dcm4chee::TrashedSeries'
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has n, :trashed_dicom_files, 'Dcm4chee::TrashedDicomFile'
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def restore_from_trash
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Dcm4chee.content_edit_service.undelete_instance(id)
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end
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def remove_from_trash
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Dcm4chee.content_edit_service.delete_instance(id)
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end
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def study_iuid
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trashed_series.trashed_study.study_iuid
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end
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def series_iuid
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trashed_series.series_iuid
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end
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def as_json(opts = {})
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opts[:methods] ||= []
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opts[:methods] << :series_iuid
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opts[:methods] << :study_iuid
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super(opts)
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end
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def self.repository(name = nil, &block)
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super(Dcm4chee.config.repository_name, &block)
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end
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end
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end
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@@ -0,0 +1,40 @@
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# -*- encoding: utf-8 -*-
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module Dcm4chee
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class TrashedPatient
|
4
|
+
include DataMapper::Resource
|
5
|
+
include DataMapper::Searcher
|
6
|
+
|
7
|
+
include HasDicomObject
|
8
|
+
|
9
|
+
storage_names[Dcm4chee.config.repository_name] = 'priv_patient'
|
10
|
+
|
11
|
+
# @return [Integer] primary key
|
12
|
+
property :id, Serial, field: 'pk'
|
13
|
+
|
14
|
+
# @return [Integer] patient id
|
15
|
+
property :pid, String, field: 'pat_id'
|
16
|
+
|
17
|
+
# @return [String] issuer of the patient id
|
18
|
+
property :pid_issuer, String, field: 'pat_id_issuer'
|
19
|
+
|
20
|
+
# @return [String] name
|
21
|
+
property :name, String, field: 'pat_name'
|
22
|
+
|
23
|
+
# @return [String] DICOM attributes
|
24
|
+
dicom_field 'pat_attrs'
|
25
|
+
|
26
|
+
has n, :trashed_studies, 'Dcm4chee::TrashedStudy'
|
27
|
+
|
28
|
+
def restore_from_trash
|
29
|
+
Dcm4chee.content_edit_service.undelete_patient(id)
|
30
|
+
end
|
31
|
+
|
32
|
+
def remove_from_trash
|
33
|
+
Dcm4chee.content_edit_service.delete_patient(id)
|
34
|
+
end
|
35
|
+
|
36
|
+
def self.repository(name = nil, &block)
|
37
|
+
super(Dcm4chee.config.repository_name, &block)
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
@@ -0,0 +1,50 @@
|
|
1
|
+
# -*- encoding: utf-8 -*-
|
2
|
+
module Dcm4chee
|
3
|
+
class TrashedSeries
|
4
|
+
include DataMapper::Resource
|
5
|
+
include DataMapper::Searcher
|
6
|
+
|
7
|
+
include HasDicomObject
|
8
|
+
|
9
|
+
storage_names[Dcm4chee.config.repository_name] = 'priv_series'
|
10
|
+
|
11
|
+
# @return [Integer] primary key
|
12
|
+
property :id, Serial, field: 'pk'
|
13
|
+
|
14
|
+
# @return [Integer] foreign key of {Study}
|
15
|
+
property :trashed_study_id, Integer, field: 'study_fk'
|
16
|
+
|
17
|
+
# @return [String] DICOM Series Instance UID(0020,000E)
|
18
|
+
property :series_iuid, Text, field: 'series_iuid'
|
19
|
+
|
20
|
+
# @return [String] Source AET
|
21
|
+
property :source_aet, String, field: 'src_aet'
|
22
|
+
|
23
|
+
dicom_field 'series_attrs'
|
24
|
+
|
25
|
+
belongs_to :trashed_study, 'Dcm4chee::TrashedStudy'
|
26
|
+
has n, :trashed_instances, 'Dcm4chee::TrashedInstance'
|
27
|
+
|
28
|
+
def restore_from_trash
|
29
|
+
Dcm4chee.content_edit_service.undelete_series(id)
|
30
|
+
end
|
31
|
+
|
32
|
+
def remove_from_trash
|
33
|
+
Dcm4chee.content_edit_service.delete_series(id)
|
34
|
+
end
|
35
|
+
|
36
|
+
class << self
|
37
|
+
def modalities
|
38
|
+
Series.aggregate(:modality)
|
39
|
+
end
|
40
|
+
|
41
|
+
def source_aets
|
42
|
+
Series.aggregate(:source_aet)
|
43
|
+
end
|
44
|
+
|
45
|
+
def repository(name = nil, &block)
|
46
|
+
super(Dcm4chee.config.repository_name, &block)
|
47
|
+
end
|
48
|
+
end
|
49
|
+
end
|
50
|
+
end
|
@@ -0,0 +1,40 @@
|
|
1
|
+
# -*- encoding: utf-8 -*-
|
2
|
+
module Dcm4chee
|
3
|
+
class TrashedStudy
|
4
|
+
include DataMapper::Resource
|
5
|
+
include DataMapper::Searcher
|
6
|
+
|
7
|
+
include HasDicomObject
|
8
|
+
|
9
|
+
storage_names[Dcm4chee.config.repository_name] = 'priv_study'
|
10
|
+
|
11
|
+
# @return [Integer] primary key
|
12
|
+
property :id, Serial, field: 'pk'
|
13
|
+
|
14
|
+
# @return [Integer] foreign key of {Patient}
|
15
|
+
property :trashed_patient_id, Integer, field: 'patient_fk'
|
16
|
+
|
17
|
+
# @return [String] DICOM Study Instance UID(0020,000D)
|
18
|
+
property :study_iuid, Text, field: 'study_iuid'
|
19
|
+
|
20
|
+
# @return [String] DICOM Accesion NO(0008,0050)
|
21
|
+
property :accession_no, String, field: 'accession_no'
|
22
|
+
|
23
|
+
dicom_field 'study_attrs'
|
24
|
+
|
25
|
+
belongs_to :trashed_patient, 'Dcm4chee::TrashedPatient'
|
26
|
+
has n, :trashed_series, 'Dcm4chee::TrashedSeries'
|
27
|
+
|
28
|
+
def restore_from_trash
|
29
|
+
Dcm4chee.content_edit_service.undelete_study(id)
|
30
|
+
end
|
31
|
+
|
32
|
+
def remove_from_trash
|
33
|
+
Dcm4chee.content_edit_service.delete_study(id)
|
34
|
+
end
|
35
|
+
|
36
|
+
def self.repository(name = nil, &block)
|
37
|
+
super(Dcm4chee.config.repository_name, &block)
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|