dcm4chee 0.1.0

data/app/models/dcm4chee/modality.rb

@@ -0,0 +1,17 @@
+module Dcm4chee
+  class Modality
+    include ::Virtus
+
+    attribute :name, String
+
+    def self.all
+      modalities = []
+
+      (Series.modalities + TrashedSeries.modalities).uniq.each do |n|
+        modalities << Modality.new(name: n)
+      end
+
+      modalities
+    end
+  end
+end

data/app/models/dcm4chee/patient.rb

@@ -0,0 +1,42 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class Patient
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'patient'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] ID of the patient
+    property :pid, String, field: 'pat_id'
+
+    # @return [String] Issuer of the patient id
+    property :pid_issuer, String, field: 'pat_id_issuer'
+
+    # @return [String] patient name
+    property :name, String, field: 'pat_name'
+
+    # @return [String] birthday
+    property :birthday, String, field: 'pat_birthdate'
+
+    # @return [String] gender
+    property :gender, String, field: 'pat_sex'
+
+    # @return [String] DICOM attributes
+    dicom_field 'pat_attrs'
+
+    has n, :studies, 'Dcm4chee::Study'
+
+    def move_to_trash
+      Dcm4chee.content_edit_service.move_patient_to_trash(id)
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end

data/app/models/dcm4chee/series.rb

@@ -0,0 +1,78 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class Series
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'series'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Study}
+    property :study_id, Integer, field: 'study_fk'
+
+    # @return [String] DICOM Series Instance UID(0020,000E)
+    property :series_iuid, Text, field: 'series_iuid'
+
+    # @return [String] DICOM Series NO(0020,0011)
+    property :series_no, String, field: 'series_no'
+
+    # @return [String] Source AET
+    property :source_aet, String, field: 'src_aet'
+
+    # @return [String] DICOM Modality(0008,0060)
+    property :modality, String, field: 'modality'
+
+    # @return [String] DICOM Series Description(0008,103E)
+    property :description, Text, field: 'series_desc'
+
+    # @return [Integer] DICOM Instances count(0020,1209)
+    property :num_instances, Integer, field: 'num_instances'
+
+    # DICOM Availability(0008,0056)
+    #   0: ONLINE
+    #   1: NEARLINE
+    #   2: OFFLINE
+    #   3: UNAVAILABLE
+    #
+    # @return [Integer] Availability(0008,0056)
+    property :availability, Enum[0, 1, 2, 3], field: 'availability'
+
+    dicom_field 'series_attrs'
+
+    belongs_to :study, 'Dcm4chee::Study'
+    has n, :instances, 'Dcm4chee::Instance'
+
+    def study_iuid
+      study.study_iuid
+    end
+
+    def move_to_trash
+      Dcm4chee.content_edit_service.move_series_to_trash(id)
+    end
+
+    def as_json(opts = {})
+      opts[:methods] ||= []
+      opts[:methods] << :study_iuid
+
+      super(opts)
+    end
+
+    class << self
+      def repository(name = nil, &block)
+        super(Dcm4chee.config.repository_name, &block)
+      end
+
+      def modalities
+        Series.aggregate(:modality)
+      end
+
+      def source_aets
+        Series.aggregate(:source_aet)
+      end
+    end
+  end
+end

data/app/models/dcm4chee/source_aet.rb

@@ -0,0 +1,17 @@
+module Dcm4chee
+  class SourceAet
+    include ::Virtus
+
+    attribute :name, String
+
+    def self.all
+      source_aets = []
+
+      (Series.source_aets + TrashedSeries.source_aets).uniq.each do |n|
+        source_aets << SourceAet.new(name: n)
+      end
+
+      source_aets
+    end
+  end
+end

data/app/models/dcm4chee/study.rb

@@ -0,0 +1,60 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class Study
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'study'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Patient}
+    property :patient_id, Integer, field: 'patient_fk'
+
+    # @return [String] DICOM Study Instance UID(0020,000D)
+    property :study_iuid, Text, field: 'study_iuid'
+
+    # @return [Integer] DICOM Study ID(0020,0010)
+    property :sid, Integer, field: 'study_id'
+
+    # @return [DateTime] DICOM timestamp, including date(0008,0020) and time(0008,0030)
+    property :study_at, DateTime, field: 'study_datetime'
+
+    # @return [String] DICOM Accession NO(0008,0050)
+    property :accession_no, String, field: 'accession_no'
+
+    # @return [String] DICOM Study Description(0008,1030)
+    property :description, Text, field: 'study_desc'
+
+    # @return [Integer] DICOM Series count(0020,1206)
+    property :num_series, Integer, field: 'num_series'
+
+    # @return [Integer] DICOM Instances count(0020,1208)
+    property :num_instances, Integer, field: 'num_instances'
+
+    # DICOM Availability(0008,0056)
+    #   0: ONLINE
+    #   1: NEARLINE
+    #   2: OFFLINE
+    #   3: UNAVAILABLE
+    #
+    # @return [Integer] DICOM Availability(0008,0056)
+    property :availability, Enum[0, 1, 2, 3], field: 'availability'
+
+    dicom_field 'study_attrs'
+
+    belongs_to :patient, 'Dcm4chee::Patient'
+    has n, :series, 'Dcm4chee::Series'
+
+    def move_to_trash
+      Dcm4chee.content_edit_service.move_study_to_trash(id)
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end

data/app/models/dcm4chee/trashed_dicom_file.rb

@@ -0,0 +1,58 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class TrashedDicomFile
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'priv_file'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Instance}
+    property :trashed_instance_id, Integer, field: 'instance_fk'
+
+    # @return [Integer] foreign key of {FileSystem}
+    property :file_system_id, Integer, field: 'filesystem_fk'
+
+    # @return [String] path
+    property :path, Text, field: 'filepath'
+
+    # @return [String] DICOM Transfer Syntax UID(0002,0010)
+    property :transfer_syntax_uid, Text, field: 'file_tsuid'
+
+    # @return [String] MD5 of the file
+    property :md5, String, field: 'file_md5'
+
+    # @return [Integer] file size
+    property :size, Integer, field: 'file_size'
+
+    # Availability:
+    #   -4: QUERY_HSM_FAILED
+    #   -3: MD5_CHECK_FAILED
+    #   -2: VERIFY_COMPRESS_FAILED
+    #   -1: COMPRESS_FAILED
+    #    0: DEFAULT
+    #    1: TO_ARCHIVE
+    #    2: ARCHIVED
+    #    3: COMPRESSING
+    #
+    # @return [Integer] file status
+    property :availability, Enum[-4, -3, -2, -1, 0, 1, 2, 3], field: 'file_status'
+
+    belongs_to :trashed_instance, 'Dcm4chee::TrashedInstance'
+    belongs_to :file_system, 'Dcm4chee::FileSystem'
+
+    # Load the dicom object from file
+    # @return [DICOM::DObject] DICOM object
+    def dcm
+      @dcm ||= DICOM::DObject.read(File.join(file_system.path, path))
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end

data/app/models/dcm4chee/trashed_instance.rb

@@ -0,0 +1,56 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class TrashedInstance
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'priv_instance'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Series}
+    property :trashed_series_id, Integer, field: 'series_fk'
+
+    # @return [DateTime] created time
+    property :created_at, DateTime, field: 'created_time'
+
+    # @return [String] DICOM SOP Instance UID(0008,0018)
+    property :sop_iuid, Text, field: 'sop_iuid'
+
+    dicom_field 'inst_attrs'
+
+    belongs_to :trashed_series, 'Dcm4chee::TrashedSeries'
+    has n, :trashed_dicom_files, 'Dcm4chee::TrashedDicomFile'
+
+    def restore_from_trash
+      Dcm4chee.content_edit_service.undelete_instance(id)
+    end
+
+    def remove_from_trash
+      Dcm4chee.content_edit_service.delete_instance(id)
+    end
+
+    def study_iuid
+      trashed_series.trashed_study.study_iuid
+    end
+
+    def series_iuid
+      trashed_series.series_iuid
+    end
+
+    def as_json(opts = {})
+      opts[:methods] ||= []
+      opts[:methods] << :series_iuid
+      opts[:methods] << :study_iuid
+
+      super(opts)
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end

data/app/models/dcm4chee/trashed_patient.rb

@@ -0,0 +1,40 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class TrashedPatient
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'priv_patient'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] patient id
+    property :pid, String, field: 'pat_id'
+
+    # @return [String] issuer of the patient id
+    property :pid_issuer, String, field: 'pat_id_issuer'
+
+    # @return [String] name
+    property :name, String, field: 'pat_name'
+
+    # @return [String] DICOM attributes
+    dicom_field 'pat_attrs'
+
+    has n, :trashed_studies, 'Dcm4chee::TrashedStudy'
+
+    def restore_from_trash
+      Dcm4chee.content_edit_service.undelete_patient(id)
+    end
+
+    def remove_from_trash
+      Dcm4chee.content_edit_service.delete_patient(id)
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end

data/app/models/dcm4chee/trashed_series.rb

@@ -0,0 +1,50 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class TrashedSeries
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'priv_series'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Study}
+    property :trashed_study_id, Integer, field: 'study_fk'
+
+    # @return [String] DICOM Series Instance UID(0020,000E)
+    property :series_iuid, Text, field: 'series_iuid'
+
+    # @return [String] Source AET
+    property :source_aet, String, field: 'src_aet'
+
+    dicom_field 'series_attrs'
+
+    belongs_to :trashed_study, 'Dcm4chee::TrashedStudy'
+    has n, :trashed_instances, 'Dcm4chee::TrashedInstance'
+
+    def restore_from_trash
+      Dcm4chee.content_edit_service.undelete_series(id)
+    end
+
+    def remove_from_trash
+      Dcm4chee.content_edit_service.delete_series(id)
+    end
+
+    class << self
+      def modalities
+        Series.aggregate(:modality)
+      end
+
+      def source_aets
+        Series.aggregate(:source_aet)
+      end
+
+      def repository(name = nil, &block)
+        super(Dcm4chee.config.repository_name, &block)
+      end
+    end
+  end
+end

data/app/models/dcm4chee/trashed_study.rb

@@ -0,0 +1,40 @@
+# -*- encoding: utf-8 -*-
+module Dcm4chee
+  class TrashedStudy
+    include DataMapper::Resource
+    include DataMapper::Searcher
+
+    include HasDicomObject
+
+    storage_names[Dcm4chee.config.repository_name] = 'priv_study'
+
+    # @return [Integer] primary key
+    property :id, Serial, field: 'pk'
+
+    # @return [Integer] foreign key of {Patient}
+    property :trashed_patient_id, Integer, field: 'patient_fk'
+
+    # @return [String] DICOM Study Instance UID(0020,000D)
+    property :study_iuid, Text, field: 'study_iuid'
+
+    # @return [String] DICOM Accesion NO(0008,0050)
+    property :accession_no, String, field: 'accession_no'
+
+    dicom_field 'study_attrs'
+
+    belongs_to :trashed_patient, 'Dcm4chee::TrashedPatient'
+    has n, :trashed_series, 'Dcm4chee::TrashedSeries'
+
+    def restore_from_trash
+      Dcm4chee.content_edit_service.undelete_study(id)
+    end
+
+    def remove_from_trash
+      Dcm4chee.content_edit_service.delete_study(id)
+    end
+
+    def self.repository(name = nil, &block)
+      super(Dcm4chee.config.repository_name, &block)
+    end
+  end
+end